Wall clock time and date at job start Tue Mar 31 2020 18:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99830 * 2 1 4 4 N 1.46503 * 109.46492 * 125.00225 * 3 2 1 5 5 C 1.33963 * 122.78701 * 269.99567 * 4 3 2 6 6 O 1.21222 * 125.41052 * 0.04313 * 5 4 3 7 7 C 1.51451 * 109.17410 * 180.02562 * 5 4 3 8 8 C 1.53730 * 103.36202 * 0.02562 * 7 5 4 9 9 C 1.52446 * 110.36640 * 241.23675 * 8 7 5 10 10 C 1.53138 * 109.60755 * 177.67986 * 9 8 7 11 11 C 1.53182 * 109.29047 * 60.44070 * 10 9 8 12 12 N 1.46941 * 108.90326 * 304.90981 * 11 10 9 13 13 C 1.34776 * 120.68778 * 234.06422 * 12 11 10 14 14 O 1.21279 * 119.99797 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.99584 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.46549 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46890 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99985 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00342 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99525 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00593 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46951 * 60.00236 * 21 19 17 23 23 H 1.48500 * 109.47597 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47358 * 300.00660 * 21 19 17 25 25 C 1.47044 * 118.62598 * 54.04473 * 12 11 10 26 26 C 1.34051 * 122.78607 * 90.00718 * 4 3 2 27 27 O 1.21232 * 125.49954 * 359.96810 * 26 4 3 28 28 H 1.07998 * 120.00091 * 179.97438 * 1 2 3 29 29 H 1.08010 * 120.00054 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99695 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47672 * 5.00726 * 3 2 1 32 32 H 1.09003 * 109.47575 * 245.00017 * 3 2 1 33 33 H 1.09002 * 110.64041 * 241.53091 * 7 5 4 34 34 H 1.08998 * 110.64205 * 118.46879 * 7 5 4 35 35 H 1.09001 * 109.45053 * 297.72290 * 9 8 7 36 36 H 1.08996 * 109.45009 * 57.63873 * 9 8 7 37 37 H 1.09000 * 109.49864 * 180.37779 * 10 9 8 38 38 H 1.08993 * 109.50242 * 300.49529 * 10 9 8 39 39 H 1.08991 * 109.56759 * 185.08426 * 11 10 9 40 40 H 1.08996 * 109.56772 * 64.73398 * 11 10 9 41 41 H 1.08998 * 109.47001 * 299.99382 * 15 13 12 42 42 H 1.08995 * 109.47571 * 59.99936 * 15 13 12 43 43 H 1.09004 * 109.47023 * 299.99602 * 16 15 13 44 44 H 1.08995 * 109.47453 * 59.99597 * 16 15 13 45 45 H 0.97005 * 119.99789 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58506 * 187.47682 * 25 12 11 47 47 H 1.09009 * 109.70020 * 67.12863 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.6555 1.8063 2.3377 6 8 1.5709 2.2584 2.6358 7 6 3.8432 1.6876 3.2699 8 6 4.9298 1.0588 2.3826 9 6 5.3612 -0.2898 2.9476 10 6 6.4006 -0.9265 2.0206 11 6 7.6229 -0.0082 1.9245 12 7 7.1830 1.3264 1.4952 13 6 7.7377 1.9208 0.4202 14 8 7.3648 3.0225 0.0767 15 6 8.8214 1.2163 -0.3547 16 6 9.2752 2.1020 -1.5169 17 6 10.3584 1.3974 -2.2922 18 1 10.6902 0.4161 -1.9864 19 6 10.9258 2.0052 -3.3920 20 7 10.5220 3.2003 -3.7640 21 14 12.2689 1.1321 -4.3527 22 1 11.7433 -0.1513 -4.8837 23 1 12.7094 1.9917 -5.4807 24 1 13.4223 0.8619 -3.4572 25 6 6.1248 2.0000 2.2624 26 6 4.2542 0.8836 1.0456 27 8 4.7682 0.4138 0.0533 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6213 1.4027 -0.9314 33 1 3.6080 1.0352 4.1108 34 1 4.1559 2.6710 3.6209 35 1 5.7963 -0.1466 3.9367 36 1 4.4938 -0.9453 3.0246 37 1 6.7029 -1.8936 2.4227 38 1 5.9690 -1.0628 1.0291 39 1 8.3266 -0.4122 1.1968 40 1 8.1041 0.0623 2.8999 41 1 9.6679 1.0181 0.3027 42 1 8.4356 0.2743 -0.7445 43 1 8.4288 2.3006 -2.1744 44 1 9.6610 3.0438 -1.1268 45 1 10.9210 3.6279 -4.5380 46 1 5.8220 2.9107 1.7455 47 1 6.4944 2.2501 3.2569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269991455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:25 Heat of formation + Delta-G solvation = -81.569905 kcal Electronic energy + Delta-G solvation = -29981.928384 eV Core-core repulsion = 25937.363424 eV Total energy + Delta-G solvation = -4044.564960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55071 -39.79508 -38.68067 -37.27485 -36.22172 -35.05718 -33.49308 -33.09857 -32.00011 -30.94872 -28.62606 -26.77013 -26.31552 -25.02936 -24.38748 -22.39519 -21.76085 -21.38714 -20.40944 -19.27514 -18.30458 -17.51973 -17.03362 -16.94653 -16.49432 -15.90063 -15.64062 -15.33078 -15.09722 -14.88903 -14.66290 -14.42778 -14.39397 -14.16888 -13.82270 -13.69007 -13.28149 -13.17764 -12.80730 -12.76823 -12.46817 -12.28599 -12.08904 -12.02772 -11.77290 -11.35094 -11.32877 -11.06514 -10.98058 -10.88716 -10.64084 -10.57043 -10.03623 -9.97228 -9.91298 -9.80887 -9.57812 -9.15950 -8.97856 -8.47198 -8.28164 -5.92834 -3.97042 1.31190 1.67446 2.44243 2.51304 3.12381 3.26595 3.36370 3.40934 3.42771 3.70111 3.86849 4.02703 4.20474 4.49533 4.51603 4.60559 4.67041 4.76594 4.84606 4.97321 5.02900 5.14040 5.16809 5.20939 5.30766 5.34759 5.41939 5.42140 5.45322 5.50864 5.52802 5.62818 5.72810 5.84738 6.14920 6.19309 6.24043 6.27827 6.28597 6.59889 6.65672 6.93356 7.10211 7.58959 7.72606 7.77506 7.90672 8.10857 8.41860 8.75178 9.11109 9.66082 11.18174 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.002983 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.375727 B = 9384.755595 C =10044.555624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.177 4.177 3 C 0.125 3.875 4 N -0.572 5.572 5 C 0.530 3.470 6 O -0.485 6.485 7 C -0.149 4.149 8 C -0.111 4.111 9 C -0.096 4.096 10 C -0.148 4.148 11 C 0.112 3.888 12 N -0.621 5.621 13 C 0.521 3.479 14 O -0.535 6.535 15 C -0.126 4.126 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.132 3.868 26 C 0.534 3.466 27 O -0.448 6.448 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.261 0.739 46 H 0.095 0.905 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.623 -8.968 18.183 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.004 3.996 4 N -0.315 5.315 5 C 0.319 3.681 6 O -0.357 6.357 7 C -0.189 4.189 8 C -0.115 4.115 9 C -0.134 4.134 10 C -0.186 4.186 11 C -0.011 4.011 12 N -0.356 5.356 13 C 0.312 3.688 14 O -0.410 6.410 15 C -0.166 4.166 16 C 0.001 3.999 17 C -0.564 4.564 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.008 3.992 26 C 0.322 3.678 27 O -0.315 6.315 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.113 0.887 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.064 -8.215 17.395 25.715 hybrid contribution 0.560 -0.556 -0.625 1.007 sum -16.504 -8.771 16.770 25.111 Atomic orbital electron populations 1.23937 0.95586 1.02397 0.98157 1.23102 0.96295 0.98239 1.01960 1.20871 0.92329 0.97079 0.89278 1.46880 1.14410 1.56765 1.13431 1.20820 0.89332 0.75191 0.82734 1.90760 1.24522 1.42159 1.78267 1.22586 0.92065 1.05544 0.98669 1.21558 0.96913 0.99981 0.93061 1.21397 0.99786 0.92517 0.99653 1.22109 0.96158 0.98644 1.01677 1.21665 0.96424 0.82137 1.00894 1.48215 1.38606 1.18603 1.30213 1.21552 0.82799 0.85955 0.78505 1.90647 1.62781 1.20711 1.66864 1.21863 0.94729 1.00924 0.99102 1.18891 0.96216 0.94182 0.90648 1.21179 1.20156 1.03056 1.12042 0.92680 1.25021 0.97061 0.94920 0.97370 1.69992 1.42465 1.14200 1.26224 0.86658 0.82226 0.79505 0.79567 1.20246 1.21313 1.20261 1.21271 0.85477 0.94817 0.97608 1.20500 0.80609 0.76149 0.90558 1.90793 1.67139 1.39097 1.34510 0.87889 0.88065 0.86894 0.88485 0.87794 0.85771 0.85721 0.89688 0.91209 0.90235 0.89550 0.88715 0.91574 0.90331 0.90104 0.95902 0.95924 0.92934 0.88675 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 14.32 29.01 0.42 -0.90 16 2 C -0.18 -1.69 9.85 -36.03 -0.35 -2.05 16 3 C 0.12 1.34 6.00 -5.19 -0.03 1.31 16 4 N -0.57 -6.45 2.54 -116.69 -0.30 -6.75 16 5 C 0.53 5.51 8.09 -10.98 -0.09 5.42 16 6 O -0.49 -6.26 17.48 5.61 0.10 -6.16 16 7 C -0.15 -1.01 6.30 -27.13 -0.17 -1.18 16 8 C -0.11 -1.01 0.69 -155.71 -0.11 -1.11 16 9 C -0.10 -0.67 4.52 -26.94 -0.12 -0.79 16 10 C -0.15 -1.31 5.81 -26.57 -0.15 -1.47 16 11 C 0.11 1.18 6.33 -3.71 -0.02 1.16 16 12 N -0.62 -8.82 2.52 -173.03 -0.44 -9.26 16 13 C 0.52 10.31 7.70 -10.98 -0.08 10.22 16 14 O -0.53 -12.79 15.41 5.56 0.09 -12.70 16 15 C -0.13 -2.64 3.99 -27.88 -0.11 -2.76 16 16 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 17 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.80 13.29 55.43 0.74 -27.07 16 21 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.13 1.50 4.94 -3.95 -0.02 1.48 16 26 C 0.53 6.68 6.49 -11.25 -0.07 6.60 16 27 O -0.45 -7.21 14.95 5.60 0.08 -7.13 16 28 H 0.10 0.68 8.06 -52.49 -0.42 0.26 16 29 H 0.10 0.77 7.84 -52.48 -0.41 0.36 16 30 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.10 0.97 7.48 -51.93 -0.39 0.58 16 32 H 0.10 1.20 7.84 -51.93 -0.41 0.79 16 33 H 0.12 0.52 7.72 -51.93 -0.40 0.12 16 34 H 0.12 0.66 7.71 -51.93 -0.40 0.26 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.03 5.95 -51.93 -0.31 0.72 16 39 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 42 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.09 1.32 7.01 -51.93 -0.36 0.95 16 47 H 0.08 0.69 8.14 -51.92 -0.42 0.26 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -37.71 383.10 -7.58 -45.28 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -7.14 Total: -1.89 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.46 Total: 3.03 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.00 Total: -43.08 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: 0.27 Total: -25.99 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.71 -7.58 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.285 kcal (2) G-P(sol) polarization free energy of solvation -37.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds