Wall clock time and date at job start Tue Mar 31 2020 18:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99830 * 2 1 4 4 N 1.46503 * 109.46492 * 125.00225 * 3 2 1 5 5 C 1.33963 * 122.78701 * 269.99567 * 4 3 2 6 6 O 1.21222 * 125.41052 * 0.04313 * 5 4 3 7 7 C 1.51451 * 109.17410 * 180.02562 * 5 4 3 8 8 C 1.53730 * 103.36202 * 0.02562 * 7 5 4 9 9 C 1.52446 * 110.36640 * 241.23675 * 8 7 5 10 10 C 1.53138 * 109.60755 * 177.67986 * 9 8 7 11 11 C 1.53182 * 109.29047 * 60.44070 * 10 9 8 12 12 N 1.46941 * 108.90326 * 304.90981 * 11 10 9 13 13 C 1.34776 * 120.68778 * 234.06422 * 12 11 10 14 14 O 1.21279 * 119.99797 * 179.97438 * 13 12 11 15 15 C 1.50702 * 119.99584 * 359.97438 * 13 12 11 16 16 C 1.53005 * 109.46549 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46890 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99985 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00342 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99525 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00593 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46951 * 60.00236 * 21 19 17 23 23 H 1.48500 * 109.47597 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47358 * 300.00660 * 21 19 17 25 25 C 1.47044 * 118.62598 * 54.04473 * 12 11 10 26 26 C 1.34051 * 122.78607 * 90.00718 * 4 3 2 27 27 O 1.21232 * 125.49954 * 359.96810 * 26 4 3 28 28 H 1.07998 * 120.00091 * 179.97438 * 1 2 3 29 29 H 1.08010 * 120.00054 * 359.97438 * 1 2 3 30 30 H 1.08001 * 119.99695 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47672 * 5.00726 * 3 2 1 32 32 H 1.09003 * 109.47575 * 245.00017 * 3 2 1 33 33 H 1.09002 * 110.64041 * 241.53091 * 7 5 4 34 34 H 1.08998 * 110.64205 * 118.46879 * 7 5 4 35 35 H 1.09001 * 109.45053 * 297.72290 * 9 8 7 36 36 H 1.08996 * 109.45009 * 57.63873 * 9 8 7 37 37 H 1.09000 * 109.49864 * 180.37779 * 10 9 8 38 38 H 1.08993 * 109.50242 * 300.49529 * 10 9 8 39 39 H 1.08991 * 109.56759 * 185.08426 * 11 10 9 40 40 H 1.08996 * 109.56772 * 64.73398 * 11 10 9 41 41 H 1.08998 * 109.47001 * 299.99382 * 15 13 12 42 42 H 1.08995 * 109.47571 * 59.99936 * 15 13 12 43 43 H 1.09004 * 109.47023 * 299.99602 * 16 15 13 44 44 H 1.08995 * 109.47453 * 59.99597 * 16 15 13 45 45 H 0.97005 * 119.99789 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.58506 * 187.47682 * 25 12 11 47 47 H 1.09009 * 109.70020 * 67.12863 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.6555 1.8063 2.3377 6 8 1.5709 2.2584 2.6358 7 6 3.8432 1.6876 3.2699 8 6 4.9298 1.0588 2.3826 9 6 5.3612 -0.2898 2.9476 10 6 6.4006 -0.9265 2.0206 11 6 7.6229 -0.0082 1.9245 12 7 7.1830 1.3264 1.4952 13 6 7.7377 1.9208 0.4202 14 8 7.3648 3.0225 0.0767 15 6 8.8214 1.2163 -0.3547 16 6 9.2752 2.1020 -1.5169 17 6 10.3584 1.3974 -2.2922 18 1 10.6902 0.4161 -1.9864 19 6 10.9258 2.0052 -3.3920 20 7 10.5220 3.2003 -3.7640 21 14 12.2689 1.1321 -4.3527 22 1 11.7433 -0.1513 -4.8837 23 1 12.7094 1.9917 -5.4807 24 1 13.4223 0.8619 -3.4572 25 6 6.1248 2.0000 2.2624 26 6 4.2542 0.8836 1.0456 27 8 4.7682 0.4138 0.0533 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0897 32 1 2.6213 1.4027 -0.9314 33 1 3.6080 1.0352 4.1108 34 1 4.1559 2.6710 3.6209 35 1 5.7963 -0.1466 3.9367 36 1 4.4938 -0.9453 3.0246 37 1 6.7029 -1.8936 2.4227 38 1 5.9690 -1.0628 1.0291 39 1 8.3266 -0.4122 1.1968 40 1 8.1041 0.0623 2.8999 41 1 9.6679 1.0181 0.3027 42 1 8.4356 0.2743 -0.7445 43 1 8.4288 2.3006 -2.1744 44 1 9.6610 3.0438 -1.1268 45 1 10.9210 3.6279 -4.5380 46 1 5.8220 2.9107 1.7455 47 1 6.4944 2.2501 3.2569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269991455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:24 Heat of formation + Delta-G solvation = -107.461956 kcal Electronic energy + Delta-G solvation = -29983.051147 eV Core-core repulsion = 25937.363424 eV Total energy + Delta-G solvation = -4045.687723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.40592 -41.00973 -39.76488 -38.36713 -37.17087 -35.96903 -35.60548 -34.07884 -33.02828 -32.69870 -29.58305 -27.95539 -27.50676 -26.29908 -25.42282 -23.49085 -23.19103 -22.33410 -21.25254 -20.41468 -19.43239 -18.82799 -18.36333 -17.82509 -17.69533 -17.36288 -16.76719 -16.57824 -16.44001 -16.10458 -15.74633 -15.57900 -15.32063 -15.02831 -14.80789 -14.62146 -14.54052 -14.27702 -14.19054 -13.74669 -13.57621 -13.52154 -13.33912 -13.17317 -12.88863 -12.78231 -12.53012 -12.51340 -12.12482 -11.99773 -11.94160 -11.80643 -11.58534 -11.40493 -11.33343 -10.96054 -10.85762 -10.65833 -10.57614 -10.55683 -9.59209 -8.19057 -6.33750 0.42828 0.93333 1.40305 1.45717 1.53334 1.58662 1.67327 1.75093 2.04631 2.42314 2.95877 3.08901 3.13440 3.34460 3.48607 3.75035 3.84256 3.86115 3.92260 4.11659 4.15698 4.19346 4.33929 4.38458 4.47504 4.50289 4.51534 4.55152 4.60545 4.65265 4.78637 4.80892 4.85313 4.94001 4.99107 5.09199 5.18015 5.45078 5.46154 5.47864 5.54767 5.59920 5.63351 5.76769 5.82832 6.15928 6.25595 6.40189 6.69539 6.84143 7.27954 7.36591 8.93695 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.002983 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.375727 B = 9384.755595 C =10044.555624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.195 4.195 3 C 0.119 3.881 4 N -0.577 5.577 5 C 0.526 3.474 6 O -0.513 6.513 7 C -0.131 4.131 8 C -0.101 4.101 9 C -0.092 4.092 10 C -0.145 4.145 11 C 0.101 3.899 12 N -0.608 5.608 13 C 0.515 3.485 14 O -0.594 6.594 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.544 4.544 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.976 3.024 22 H -0.264 1.264 23 H -0.287 1.287 24 H -0.259 1.259 25 C 0.126 3.874 26 C 0.524 3.476 27 O -0.497 6.497 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.091 0.909 43 H -0.028 1.028 44 H -0.017 1.017 45 H 0.263 0.737 46 H 0.061 0.939 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 -11.740 21.789 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.213 4.213 3 C -0.001 4.001 4 N -0.320 5.320 5 C 0.317 3.683 6 O -0.387 6.387 7 C -0.170 4.170 8 C -0.105 4.105 9 C -0.129 4.129 10 C -0.183 4.183 11 C -0.020 4.020 12 N -0.341 5.341 13 C 0.306 3.694 14 O -0.475 6.475 15 C -0.154 4.154 16 C 0.009 3.991 17 C -0.582 4.582 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.188 1.188 23 H -0.213 1.213 24 H -0.183 1.183 25 C 0.003 3.997 26 C 0.314 3.686 27 O -0.368 6.368 28 H 0.141 0.859 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.146 0.854 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.109 0.891 43 H -0.009 1.009 44 H 0.002 0.998 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.639 -11.045 21.080 29.038 hybrid contribution 0.303 0.317 -1.748 1.803 sum -16.336 -10.728 19.332 27.490 Atomic orbital electron populations 1.24150 0.94989 1.03571 0.95646 1.22981 0.96804 0.97253 1.04297 1.20869 0.92338 0.98183 0.88749 1.47093 1.14352 1.56506 1.14039 1.21512 0.90010 0.74043 0.82706 1.90747 1.25974 1.43342 1.78622 1.22724 0.88668 1.07513 0.98120 1.21603 0.96234 1.01285 0.91373 1.21531 0.99989 0.90684 1.00675 1.22080 0.95719 0.99882 1.00622 1.22069 0.97435 0.80146 1.02392 1.48141 1.38016 1.19699 1.28215 1.21241 0.82942 0.85326 0.79914 1.90620 1.64694 1.23189 1.68950 1.21586 0.96533 0.99668 0.97569 1.18650 0.94303 0.93980 0.92204 1.21673 1.20227 1.03881 1.12394 0.90601 1.26181 1.00022 0.95631 0.98697 1.70187 1.44309 1.16388 1.26983 0.85345 0.78734 0.78231 0.77763 1.18826 1.21251 1.18288 1.21594 0.85596 0.93887 0.98653 1.21292 0.80875 0.74980 0.91492 1.90773 1.68122 1.41352 1.36561 0.85920 0.87567 0.87347 0.88205 0.89989 0.81540 0.83485 0.85367 0.89641 0.87094 0.93294 0.89934 0.87392 0.87550 0.89128 1.00919 0.99817 0.92846 0.92040 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 14.32 67.78 0.97 -1.30 16 2 C -0.19 -3.84 9.85 25.64 0.25 -3.59 16 3 C 0.12 2.78 6.00 85.63 0.51 3.29 16 4 N -0.58 -13.33 2.54 -760.80 -1.94 -15.26 16 5 C 0.53 10.24 8.09 88.02 0.71 10.95 16 6 O -0.51 -12.72 17.48 -2.85 -0.05 -12.77 16 7 C -0.13 -1.26 6.30 30.33 0.19 -1.06 16 8 C -0.10 -1.56 0.69 -52.96 -0.04 -1.59 16 9 C -0.09 -0.82 4.52 30.46 0.14 -0.69 16 10 C -0.15 -2.11 5.81 30.70 0.18 -1.93 16 11 C 0.10 1.82 6.33 86.36 0.55 2.37 16 12 N -0.61 -16.68 2.52 -819.73 -2.07 -18.75 16 13 C 0.52 21.28 7.70 87.66 0.67 21.95 16 14 O -0.59 -30.68 15.41 -3.03 -0.05 -30.72 16 15 C -0.11 -4.93 3.99 29.85 0.12 -4.81 16 16 C 0.05 2.72 4.26 29.85 0.13 2.84 16 17 C -0.54 -32.11 9.11 25.60 0.23 -31.87 16 18 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16 19 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 20 N -0.94 -61.30 13.29 21.45 0.28 -61.01 16 21 Si 0.98 45.31 29.54 68.60 2.03 47.33 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 25 C 0.13 2.59 4.94 86.14 0.43 3.01 16 26 C 0.52 13.31 6.49 87.81 0.57 13.88 16 27 O -0.50 -17.15 14.95 -2.88 -0.04 -17.19 16 28 H 0.12 1.42 8.06 -2.91 -0.02 1.40 16 29 H 0.11 1.55 7.84 -2.91 -0.02 1.52 16 30 H 0.11 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.10 2.17 7.48 -2.39 -0.02 2.15 16 32 H 0.08 2.20 7.84 -2.39 -0.02 2.18 16 33 H 0.17 0.31 7.72 -2.39 -0.02 0.30 16 34 H 0.15 0.88 7.71 -2.39 -0.02 0.86 16 35 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.13 5.95 -2.39 -0.01 1.11 16 39 H 0.08 1.71 5.93 -2.39 -0.01 1.69 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 3.94 7.94 -2.39 -0.02 3.92 16 42 H 0.09 3.70 7.70 -2.39 -0.02 3.68 16 43 H -0.03 -1.87 8.10 -2.38 -0.02 -1.89 16 44 H -0.02 -1.09 8.10 -2.39 -0.02 -1.10 16 45 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 46 H 0.06 1.73 7.01 -2.39 -0.02 1.71 16 47 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -92.63 383.10 5.21 -87.42 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.97 Total: 9.53 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.08 Total: 11.43 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.72 Total: -95.03 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -0.14 Total: -60.68 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -92.63 5.21 -87.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.039 kcal (2) G-P(sol) polarization free energy of solvation -92.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds