Wall clock time and date at job start Tue Mar 31 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.50696 * 109.46902 * 119.99222 * 2 1 3 5 5 O 1.21285 * 119.99707 * 116.31331 * 4 2 1 6 6 N 1.34770 * 120.00689 * 296.31216 * 4 2 1 7 7 C 1.46500 * 120.00617 * 184.85406 * 6 4 2 8 8 H 1.09005 * 109.17428 * 51.07844 * 7 6 4 9 9 C 1.53149 * 107.77092 * 292.20421 * 7 6 4 10 10 C 1.53971 * 108.33413 * 293.58484 * 9 7 6 11 11 H 1.08999 * 112.99560 * 169.63956 * 10 9 7 12 12 C 1.57168 * 107.04256 * 294.86479 * 10 9 7 13 13 C 1.55165 * 99.59099 * 73.94320 * 12 10 9 14 14 H 1.09001 * 112.48593 * 162.91020 * 13 12 10 15 15 C 1.52986 * 109.32792 * 170.63481 * 7 6 4 16 16 N 1.47791 * 104.87945 * 40.38765 * 13 12 10 17 17 C 1.36942 * 125.85680 * 153.27600 * 16 13 12 18 18 H 1.07999 * 120.00005 * 147.72670 * 17 16 13 19 19 C 1.38811 * 119.99968 * 327.72203 * 17 16 13 20 20 N 1.31616 * 119.99763 * 168.53984 * 19 17 16 21 21 Si 1.86798 * 119.99934 * 348.54863 * 19 17 16 22 22 H 1.48491 * 109.47463 * 87.38884 * 21 19 17 23 23 H 1.48504 * 109.46730 * 207.39072 * 21 19 17 24 24 H 1.48504 * 109.47268 * 327.38389 * 21 19 17 25 25 C 1.47086 * 108.28703 * 333.25592 * 16 13 12 26 26 C 1.52992 * 109.47561 * 239.99806 * 2 1 3 27 27 F 1.39896 * 109.47051 * 299.99982 * 26 2 1 28 28 F 1.39910 * 109.47331 * 59.99769 * 26 2 1 29 29 F 1.39902 * 109.47595 * 179.97438 * 26 2 1 30 30 H 1.08999 * 109.47882 * 300.00364 * 1 2 3 31 31 H 1.09005 * 109.47145 * 60.00245 * 1 2 3 32 32 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46837 * 184.43586 * 3 2 1 34 34 H 1.09000 * 109.46962 * 304.43303 * 3 2 1 35 35 H 1.08993 * 109.47686 * 64.43216 * 3 2 1 36 36 H 0.97005 * 119.99899 * 4.85914 * 6 4 2 37 37 H 1.09002 * 108.53990 * 174.67134 * 9 7 6 38 38 H 1.09003 * 111.20073 * 54.06008 * 9 7 6 39 39 H 1.08999 * 111.97006 * 316.27487 * 12 10 9 40 40 H 1.09003 * 111.20682 * 191.30591 * 12 10 9 41 41 H 1.08997 * 109.53700 * 305.29624 * 15 7 6 42 42 H 1.08997 * 109.53304 * 185.13469 * 15 7 6 43 43 H 0.97005 * 119.99963 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.97754 * 120.45687 * 25 16 13 45 45 H 1.08996 * 109.97276 * 241.74002 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7102 1.2305 5 8 2.6733 -1.7339 1.1206 6 7 1.7691 -0.2080 2.4532 7 6 2.3459 -0.8378 3.6436 8 1 3.4205 -0.9535 3.5023 9 6 1.6993 -2.2169 3.8025 10 6 0.2074 -2.0179 4.1272 11 1 -0.3660 -2.9436 4.0797 12 6 0.1313 -1.3153 5.5311 13 6 0.5740 0.1162 5.1281 14 1 0.3170 0.8599 5.8824 15 6 2.0882 0.0510 4.8618 16 7 -0.0943 0.3701 3.8346 17 6 -0.4393 1.5986 3.3374 18 1 -0.4272 1.7726 2.2716 19 6 -0.8045 2.6202 4.2034 20 7 -0.9167 3.8530 3.7565 21 14 -1.1367 2.2451 6.0029 22 1 0.1353 2.3144 6.7660 23 1 -2.0953 3.2402 6.5472 24 1 -1.7143 0.8826 6.1262 25 6 -0.3250 -0.9229 3.1726 26 6 2.0401 -0.7212 -1.2491 27 9 1.5738 -2.0402 -1.2491 28 9 1.5737 -0.0618 -2.3916 29 9 3.4391 -0.7207 -1.2494 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1270 1.4436 -0.0795 34 1 1.6131 1.9788 -0.8476 35 1 1.7429 1.9330 0.9269 36 1 1.1978 0.5705 2.5451 37 1 2.1868 -2.7352 4.6282 38 1 1.7992 -2.8065 2.8912 39 1 0.8255 -1.7567 6.2461 40 1 -0.8873 -1.3190 5.9192 41 1 2.4677 1.0542 4.6679 42 1 2.5935 -0.3679 5.7320 43 1 -1.1716 4.5670 4.3617 44 1 -1.3912 -1.0672 2.9984 45 1 0.2154 -0.9586 2.2267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278958575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:37 Heat of formation + Delta-G solvation = -112.296375 kcal Electronic energy + Delta-G solvation = -33258.504896 eV Core-core repulsion = 28670.750796 eV Total energy + Delta-G solvation = -4587.754100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.87160 -47.37013 -47.26601 -41.27451 -38.65004 -35.22560 -33.93478 -33.12569 -31.31966 -30.88178 -28.34137 -27.37159 -25.95951 -25.62510 -23.27904 -23.07035 -21.57317 -20.23385 -19.91407 -19.14074 -18.38129 -18.08366 -17.38931 -16.75096 -16.53449 -15.83308 -15.32580 -14.83684 -14.54292 -14.35567 -14.09297 -13.73045 -13.65927 -13.49178 -13.46394 -13.40911 -13.27037 -13.23268 -12.94270 -12.67775 -12.48090 -12.34102 -12.21861 -12.09659 -11.99826 -11.91530 -11.45289 -11.31785 -11.25006 -11.12242 -11.01299 -10.90328 -10.34539 -10.19999 -9.90342 -9.75652 -9.44391 -9.29511 -8.76845 -7.97751 -7.09428 -6.22495 -3.70211 2.81768 2.90300 3.12417 3.30587 3.33207 3.49103 3.89329 4.25218 4.28336 4.45840 4.73060 4.89673 4.92115 5.01629 5.02578 5.15681 5.17922 5.27241 5.52995 5.61175 5.63615 5.66912 5.71402 5.77277 5.78960 5.81359 5.94239 6.03887 6.08260 6.22053 6.25349 6.26780 6.32722 6.34535 6.51066 6.53004 6.69111 6.73597 6.78720 7.04857 7.58210 8.04428 8.13089 8.53765 8.69750 9.38155 9.94038 10.91545 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.005549 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.881686 B = 5045.080995 C = 5992.305099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.127 4.127 3 C -0.150 4.150 4 C 0.512 3.488 5 O -0.547 6.547 6 N -0.689 5.689 7 C 0.163 3.837 8 H 0.067 0.933 9 C -0.126 4.126 10 C -0.102 4.102 11 H 0.081 0.919 12 C -0.131 4.131 13 C 0.133 3.867 14 H 0.069 0.931 15 C -0.138 4.138 16 N -0.601 5.601 17 C -0.276 4.276 18 H 0.095 0.905 19 C 0.040 3.960 20 N -0.899 5.899 21 Si 0.896 3.104 22 H -0.283 1.283 23 H -0.304 1.304 24 H -0.269 1.269 25 C 0.099 3.901 26 C 0.475 3.525 27 F -0.174 7.174 28 F -0.184 7.184 29 F -0.177 7.177 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.435 0.565 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.268 0.732 44 H 0.022 0.978 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -7.445 -3.029 9.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.296 3.704 5 O -0.426 6.426 6 N -0.355 5.355 7 C 0.058 3.942 8 H 0.085 0.915 9 C -0.164 4.164 10 C -0.121 4.121 11 H 0.100 0.900 12 C -0.170 4.170 13 C 0.028 3.972 14 H 0.087 0.913 15 C -0.178 4.178 16 N -0.329 5.329 17 C -0.403 4.403 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.539 5.539 21 Si 0.729 3.271 22 H -0.212 1.212 23 H -0.232 1.232 24 H -0.194 1.194 25 C -0.026 4.026 26 C 0.420 3.580 27 F -0.155 7.155 28 F -0.165 7.165 29 F -0.158 7.158 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.290 0.710 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.040 0.960 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.776 -7.814 -3.132 9.679 hybrid contribution -0.463 0.190 0.939 1.064 sum 4.313 -7.624 -2.192 9.030 Atomic orbital electron populations 1.22165 0.89058 1.04207 1.06109 1.22046 1.00920 0.98838 0.91324 1.21978 1.01980 0.90971 1.05766 1.19679 0.80629 0.85227 0.84904 1.90702 1.41078 1.23894 1.86953 1.47618 1.49577 1.34689 1.03656 1.20793 0.96445 0.92136 0.84787 0.91493 1.22138 0.95208 0.96829 1.02238 1.22816 0.95931 0.97853 0.95454 0.90047 1.23329 1.01012 0.96358 0.96267 1.21974 0.90664 0.94714 0.89877 0.91347 1.22414 0.99218 0.99851 0.96320 1.45160 1.66779 1.02104 1.18877 1.18557 1.43326 0.84664 0.93708 0.88735 1.25326 0.96897 0.95514 0.98506 1.69720 1.48945 0.99426 1.35852 0.86703 0.77232 0.77587 0.85570 1.21191 1.23238 1.19393 1.22539 0.97514 0.85003 0.97497 1.19895 0.75692 0.77627 0.84787 1.93175 1.88315 1.37327 1.96680 1.93149 1.88613 1.80954 1.53814 1.93166 1.29576 1.96348 1.96704 0.87753 0.90372 0.91095 0.91235 0.90255 0.88657 0.71034 0.92012 0.90090 0.91192 0.91675 0.90975 0.91347 0.92246 0.95991 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 7.13 37.16 0.26 -2.05 16 2 C -0.13 -1.96 0.44 -155.66 -0.07 -2.03 16 3 C -0.15 -2.12 8.15 37.16 0.30 -1.82 16 4 C 0.51 8.93 4.82 -10.99 -0.05 8.87 16 5 O -0.55 -10.68 13.26 5.55 0.07 -10.61 16 6 N -0.69 -11.92 2.53 -53.74 -0.14 -12.05 16 7 C 0.16 2.65 2.80 -67.86 -0.19 2.46 16 8 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 9 C -0.13 -1.92 5.13 -26.15 -0.13 -2.06 16 10 C -0.10 -1.60 4.31 -86.95 -0.37 -1.98 16 11 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 12 C -0.13 -2.12 6.30 -23.32 -0.15 -2.27 16 13 C 0.13 2.50 2.87 -65.62 -0.19 2.31 16 14 H 0.07 1.42 2.61 -51.93 -0.14 1.29 16 15 C -0.14 -2.27 5.44 -26.28 -0.14 -2.41 16 16 N -0.60 -12.19 1.43 -161.37 -0.23 -12.42 16 17 C -0.28 -6.47 8.81 -15.06 -0.13 -6.60 16 18 H 0.10 2.27 5.96 -52.49 -0.31 1.96 16 19 C 0.04 1.01 5.49 -17.43 -0.10 0.92 16 20 N -0.90 -24.39 13.97 55.49 0.78 -23.62 16 21 Si 0.90 20.52 24.62 -169.99 -4.18 16.34 16 22 H -0.28 -6.30 6.68 56.52 0.38 -5.92 16 23 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.27 -6.05 6.77 56.52 0.38 -5.67 16 25 C 0.10 1.80 5.29 -2.82 -0.01 1.78 16 26 C 0.47 7.51 1.95 37.15 0.07 7.58 16 27 F -0.17 -2.93 15.79 2.25 0.04 -2.89 16 28 F -0.18 -2.67 16.36 2.25 0.04 -2.63 16 29 F -0.18 -2.96 15.89 2.25 0.04 -2.92 16 30 H 0.10 1.70 4.62 -51.93 -0.24 1.46 16 31 H 0.08 1.01 7.80 -51.93 -0.41 0.60 16 32 H 0.07 1.01 7.77 -51.93 -0.40 0.61 16 33 H 0.07 0.94 7.68 -51.93 -0.40 0.55 16 34 H 0.08 1.00 7.93 -51.93 -0.41 0.58 16 35 H 0.09 1.47 7.34 -51.93 -0.38 1.09 16 36 H 0.43 8.06 2.70 -40.82 -0.11 7.95 16 37 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 38 H 0.08 1.36 6.49 -51.93 -0.34 1.02 16 39 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 40 H 0.06 1.10 7.99 -51.93 -0.42 0.68 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 1.25 2.17 -60.81 -0.13 1.11 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -26.91 329.12 -5.33 -32.24 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -5.79 Total: 10.89 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.90 Total: 2.71 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.41 Total: -48.09 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 0.11 Total: -8.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.18 Total: 16.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.91 -5.33 -32.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278958575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.057 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds