Wall clock time and date at job start Tue Mar 31 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46816 * 2 1 4 4 C 1.50696 * 109.46902 * 119.99222 * 2 1 3 5 5 O 1.21285 * 119.99707 * 116.31331 * 4 2 1 6 6 N 1.34770 * 120.00689 * 296.31216 * 4 2 1 7 7 C 1.46500 * 120.00617 * 184.85406 * 6 4 2 8 8 H 1.09005 * 109.17428 * 51.07844 * 7 6 4 9 9 C 1.53149 * 107.77092 * 292.20421 * 7 6 4 10 10 C 1.53971 * 108.33413 * 293.58484 * 9 7 6 11 11 H 1.08999 * 112.99560 * 169.63956 * 10 9 7 12 12 C 1.57168 * 107.04256 * 294.86479 * 10 9 7 13 13 C 1.55165 * 99.59099 * 73.94320 * 12 10 9 14 14 H 1.09001 * 112.48593 * 162.91020 * 13 12 10 15 15 C 1.52986 * 109.32792 * 170.63481 * 7 6 4 16 16 N 1.47791 * 104.87945 * 40.38765 * 13 12 10 17 17 C 1.36942 * 125.85680 * 153.27600 * 16 13 12 18 18 H 1.07999 * 120.00005 * 147.72670 * 17 16 13 19 19 C 1.38811 * 119.99968 * 327.72203 * 17 16 13 20 20 N 1.31616 * 119.99763 * 168.53984 * 19 17 16 21 21 Si 1.86798 * 119.99934 * 348.54863 * 19 17 16 22 22 H 1.48491 * 109.47463 * 87.38884 * 21 19 17 23 23 H 1.48504 * 109.46730 * 207.39072 * 21 19 17 24 24 H 1.48504 * 109.47268 * 327.38389 * 21 19 17 25 25 C 1.47086 * 108.28703 * 333.25592 * 16 13 12 26 26 C 1.52992 * 109.47561 * 239.99806 * 2 1 3 27 27 F 1.39896 * 109.47051 * 299.99982 * 26 2 1 28 28 F 1.39910 * 109.47331 * 59.99769 * 26 2 1 29 29 F 1.39902 * 109.47595 * 179.97438 * 26 2 1 30 30 H 1.08999 * 109.47882 * 300.00364 * 1 2 3 31 31 H 1.09005 * 109.47145 * 60.00245 * 1 2 3 32 32 H 1.09002 * 109.47196 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46837 * 184.43586 * 3 2 1 34 34 H 1.09000 * 109.46962 * 304.43303 * 3 2 1 35 35 H 1.08993 * 109.47686 * 64.43216 * 3 2 1 36 36 H 0.97005 * 119.99899 * 4.85914 * 6 4 2 37 37 H 1.09002 * 108.53990 * 174.67134 * 9 7 6 38 38 H 1.09003 * 111.20073 * 54.06008 * 9 7 6 39 39 H 1.08999 * 111.97006 * 316.27487 * 12 10 9 40 40 H 1.09003 * 111.20682 * 191.30591 * 12 10 9 41 41 H 1.08997 * 109.53700 * 305.29624 * 15 7 6 42 42 H 1.08997 * 109.53304 * 185.13469 * 15 7 6 43 43 H 0.97005 * 119.99963 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.97754 * 120.45687 * 25 16 13 45 45 H 1.08996 * 109.97276 * 241.74002 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7102 1.2305 5 8 2.6733 -1.7339 1.1206 6 7 1.7691 -0.2080 2.4532 7 6 2.3459 -0.8378 3.6436 8 1 3.4205 -0.9535 3.5023 9 6 1.6993 -2.2169 3.8025 10 6 0.2074 -2.0179 4.1272 11 1 -0.3660 -2.9436 4.0797 12 6 0.1313 -1.3153 5.5311 13 6 0.5740 0.1162 5.1281 14 1 0.3170 0.8599 5.8824 15 6 2.0882 0.0510 4.8618 16 7 -0.0943 0.3701 3.8346 17 6 -0.4393 1.5986 3.3374 18 1 -0.4272 1.7726 2.2716 19 6 -0.8045 2.6202 4.2034 20 7 -0.9167 3.8530 3.7565 21 14 -1.1367 2.2451 6.0029 22 1 0.1353 2.3144 6.7660 23 1 -2.0953 3.2402 6.5472 24 1 -1.7143 0.8826 6.1262 25 6 -0.3250 -0.9229 3.1726 26 6 2.0401 -0.7212 -1.2491 27 9 1.5738 -2.0402 -1.2491 28 9 1.5737 -0.0618 -2.3916 29 9 3.4391 -0.7207 -1.2494 30 1 -0.3635 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1270 1.4436 -0.0795 34 1 1.6131 1.9788 -0.8476 35 1 1.7429 1.9330 0.9269 36 1 1.1978 0.5705 2.5451 37 1 2.1868 -2.7352 4.6282 38 1 1.7992 -2.8065 2.8912 39 1 0.8255 -1.7567 6.2461 40 1 -0.8873 -1.3190 5.9192 41 1 2.4677 1.0542 4.6679 42 1 2.5935 -0.3679 5.7320 43 1 -1.1716 4.5670 4.3617 44 1 -1.3912 -1.0672 2.9984 45 1 0.2154 -0.9586 2.2267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278958575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:37 Heat of formation + Delta-G solvation = -126.230155 kcal Electronic energy + Delta-G solvation = -33259.109110 eV Core-core repulsion = 28670.750796 eV Total energy + Delta-G solvation = -4588.358314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.14317 -48.61589 -48.57297 -42.65300 -40.03702 -36.54409 -35.49733 -34.63245 -32.97509 -32.26628 -29.73448 -28.57477 -27.21594 -27.18898 -24.62906 -24.57590 -22.90621 -21.78930 -21.24294 -20.49742 -19.67097 -19.36709 -18.78832 -18.25676 -18.05346 -17.30624 -16.70851 -16.21556 -16.02365 -15.62989 -15.41934 -15.19794 -15.00140 -14.84960 -14.79940 -14.77085 -14.70742 -14.60191 -14.27247 -14.06861 -13.80858 -13.77673 -13.60032 -13.37233 -13.33921 -13.22881 -12.89663 -12.83553 -12.66685 -12.46960 -12.39045 -12.28691 -11.89989 -11.66142 -11.41565 -11.21119 -10.95226 -10.79612 -10.49083 -9.37402 -8.77964 -8.16188 -5.57662 1.29443 1.43445 1.49660 1.50826 1.58207 2.18959 2.41026 2.62770 2.98764 3.13358 3.16914 3.27012 3.63979 3.67281 3.76438 3.78779 3.87545 3.91809 4.18791 4.29377 4.33533 4.44302 4.50586 4.52876 4.59824 4.62148 4.67656 4.75733 4.82974 4.94126 5.01668 5.03793 5.05564 5.07389 5.15204 5.21126 5.36923 5.39674 5.45197 5.70661 5.83238 6.16746 6.71373 6.78868 7.27896 7.52268 8.15548 9.00924 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.005549 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.881686 B = 5045.080995 C = 5992.305099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.146 4.146 4 C 0.511 3.489 5 O -0.568 6.568 6 N -0.692 5.692 7 C 0.157 3.843 8 H 0.071 0.929 9 C -0.117 4.117 10 C -0.094 4.094 11 H 0.102 0.898 12 C -0.123 4.123 13 C 0.117 3.883 14 H 0.051 0.949 15 C -0.131 4.131 16 N -0.610 5.610 17 C -0.246 4.246 18 H 0.082 0.918 19 C -0.015 4.015 20 N -0.944 5.944 21 Si 0.944 3.056 22 H -0.275 1.275 23 H -0.323 1.323 24 H -0.263 1.263 25 C 0.094 3.906 26 C 0.476 3.524 27 F -0.180 7.180 28 F -0.174 7.174 29 F -0.182 7.182 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.429 0.571 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.262 0.738 44 H 0.010 0.990 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -9.441 -2.396 11.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.130 4.130 3 C -0.203 4.203 4 C 0.295 3.705 5 O -0.449 6.449 6 N -0.356 5.356 7 C 0.053 3.947 8 H 0.089 0.911 9 C -0.156 4.156 10 C -0.113 4.113 11 H 0.120 0.880 12 C -0.161 4.161 13 C 0.012 3.988 14 H 0.068 0.932 15 C -0.170 4.170 16 N -0.338 5.338 17 C -0.373 4.373 18 H 0.100 0.900 19 C -0.212 4.212 20 N -0.588 5.588 21 Si 0.777 3.223 22 H -0.202 1.202 23 H -0.253 1.253 24 H -0.188 1.188 25 C -0.030 4.030 26 C 0.422 3.578 27 F -0.161 7.161 28 F -0.156 7.156 29 F -0.164 7.164 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.282 0.718 37 H 0.109 0.891 38 H 0.086 0.914 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.071 0.929 44 H 0.028 0.972 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.558 -9.860 -2.482 11.588 hybrid contribution -0.668 0.757 0.651 1.201 sum 4.891 -9.103 -1.831 10.494 Atomic orbital electron populations 1.22109 0.88481 1.04319 1.06059 1.22044 1.01301 0.99135 0.90474 1.21958 1.02409 0.90231 1.05680 1.19915 0.80233 0.84970 0.85369 1.90688 1.42099 1.24803 1.87274 1.47676 1.49289 1.34415 1.04233 1.20965 0.96814 0.92715 0.84220 0.91065 1.22066 0.94792 0.95952 1.02747 1.22837 0.96449 0.97623 0.94386 0.87966 1.23334 1.01441 0.94357 0.96955 1.22163 0.92150 0.96006 0.88451 0.93208 1.22344 0.97579 0.99364 0.97734 1.45223 1.67104 1.01831 1.19665 1.18584 1.39938 0.85601 0.93212 0.90040 1.25833 0.98358 0.95588 1.01417 1.69831 1.52114 1.00213 1.36645 0.85921 0.76909 0.76854 0.82590 1.20234 1.25256 1.18755 1.22649 0.97039 0.84882 0.98453 1.19879 0.75420 0.77412 0.85108 1.93162 1.88356 1.37870 1.96736 1.93167 1.88444 1.80681 1.53289 1.93155 1.30087 1.96358 1.96757 0.89601 0.88548 0.90880 0.90712 0.88498 0.90254 0.71786 0.89091 0.91409 0.87776 0.92439 0.92685 0.87926 0.92920 0.97180 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 7.13 71.98 0.51 -3.82 16 2 C -0.12 -3.74 0.44 -52.93 -0.02 -3.77 16 3 C -0.15 -4.02 8.15 71.98 0.59 -3.44 16 4 C 0.51 17.26 4.82 87.66 0.42 17.68 16 5 O -0.57 -21.42 13.26 -3.04 -0.04 -21.46 16 6 N -0.69 -23.15 2.53 -442.32 -1.12 -24.26 16 7 C 0.16 4.72 2.80 45.04 0.13 4.85 16 8 H 0.07 2.11 8.11 -2.38 -0.02 2.09 16 9 C -0.12 -3.17 5.13 30.97 0.16 -3.01 16 10 C -0.09 -2.66 4.31 -8.42 -0.04 -2.69 16 11 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 12 C -0.12 -3.49 6.30 32.80 0.21 -3.29 16 13 C 0.12 4.13 2.87 45.79 0.13 4.26 16 14 H 0.05 1.98 2.61 -2.39 -0.01 1.97 16 15 C -0.13 -3.94 5.44 30.89 0.17 -3.78 16 16 N -0.61 -24.14 1.43 -664.45 -0.95 -25.09 16 17 C -0.25 -11.58 8.81 84.03 0.74 -10.84 16 18 H 0.08 4.01 5.96 -2.91 -0.02 4.00 16 19 C -0.01 -0.75 5.49 84.86 0.47 -0.28 16 20 N -0.94 -52.79 13.97 21.65 0.30 -52.49 16 21 Si 0.94 42.65 24.62 68.60 1.69 44.34 16 22 H -0.27 -11.79 6.68 99.48 0.66 -11.13 16 23 H -0.32 -15.39 7.11 99.48 0.71 -14.68 16 24 H -0.26 -11.38 6.77 99.48 0.67 -10.70 16 25 C 0.09 3.26 5.29 86.85 0.46 3.72 16 26 C 0.48 14.44 1.95 71.98 0.14 14.58 16 27 F -0.18 -5.84 15.79 44.97 0.71 -5.13 16 28 F -0.17 -4.75 16.36 44.97 0.74 -4.02 16 29 F -0.18 -5.88 15.89 44.97 0.71 -5.16 16 30 H 0.09 2.80 4.62 -2.39 -0.01 2.79 16 31 H 0.10 2.35 7.80 -2.38 -0.02 2.33 16 32 H 0.07 2.02 7.77 -2.39 -0.02 2.00 16 33 H 0.07 1.97 7.68 -2.39 -0.02 1.95 16 34 H 0.10 2.31 7.93 -2.39 -0.02 2.29 16 35 H 0.08 2.47 7.34 -2.39 -0.02 2.45 16 36 H 0.43 15.72 2.70 -92.70 -0.25 15.47 16 37 H 0.09 1.97 8.03 -2.39 -0.02 1.95 16 38 H 0.07 2.07 6.49 -2.39 -0.02 2.06 16 39 H 0.10 2.28 7.83 -2.39 -0.02 2.26 16 40 H 0.06 1.74 7.99 -2.39 -0.02 1.72 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 2.40 8.00 -2.39 -0.02 2.38 16 43 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.07 2.54 2.17 -19.92 -0.04 2.50 16 Total: -1.00 -58.02 329.12 6.79 -51.23 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.68 Total: 31.87 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.06 Total: 10.17 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -1.77 Total: -101.84 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.46 kcal Atomic # 9 Polarization: -16.48 SS G_CDS: 2.16 Total: -14.32 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.69 Total: 44.34 kcal Total: -58.02 6.79 -51.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278958575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.997 kcal (2) G-P(sol) polarization free energy of solvation -58.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds