Wall clock time and date at job start Tue Mar 31 2020 17:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 H 1.09005 * 109.47154 * 178.61080 * 3 2 1 5 5 C 1.53002 * 109.47140 * 58.61083 * 3 2 1 6 6 C 1.53002 * 109.47011 * 65.03184 * 5 3 2 7 7 F 1.39902 * 109.47000 * 53.79796 * 6 5 3 8 8 F 1.39900 * 109.47439 * 173.80295 * 6 5 3 9 9 F 1.39903 * 109.46890 * 293.80191 * 6 5 3 10 10 C 1.50702 * 109.47204 * 298.61221 * 3 2 1 11 11 O 1.21284 * 119.99997 * 113.42755 * 10 3 2 12 12 N 1.34776 * 120.00141 * 293.69733 * 10 3 2 13 13 C 1.46500 * 119.99934 * 184.65476 * 12 10 3 14 14 C 1.50707 * 109.46549 * 180.02562 * 13 12 10 15 15 C 1.29454 * 117.69270 * 95.00900 * 14 13 12 16 16 C 1.50321 * 123.65468 * 180.85688 * 15 14 13 17 17 N 1.47012 * 109.15929 * 349.01640 * 16 15 14 18 18 C 1.36937 * 121.37349 * 222.96557 * 17 16 15 19 19 H 1.07995 * 119.99989 * 150.97429 * 18 17 16 20 20 C 1.38816 * 120.00266 * 330.98332 * 18 17 16 21 21 N 1.31621 * 119.99813 * 1.78353 * 20 18 17 22 22 Si 1.86790 * 120.00217 * 181.78881 * 20 18 17 23 23 H 1.48498 * 109.47223 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47345 * 119.99806 * 22 20 18 25 25 H 1.48506 * 109.47261 * 239.99540 * 22 20 18 26 26 C 1.47333 * 117.25221 * 42.95192 * 17 16 15 27 27 C 1.49965 * 117.69605 * 274.73803 * 14 13 12 28 28 H 1.09007 * 109.47160 * 64.21929 * 1 2 3 29 29 H 1.08996 * 109.47362 * 184.22533 * 1 2 3 30 30 H 1.09001 * 109.46903 * 304.22531 * 1 2 3 31 31 H 1.09004 * 109.46731 * 240.00200 * 2 1 3 32 32 H 1.08995 * 109.46989 * 120.00445 * 2 1 3 33 33 H 1.08999 * 109.47007 * 185.02769 * 5 3 2 34 34 H 1.08994 * 109.47450 * 305.03244 * 5 3 2 35 35 H 0.96998 * 119.99960 * 4.66293 * 12 10 3 36 36 H 1.08999 * 109.47556 * 300.00458 * 13 12 10 37 37 H 1.08996 * 109.47048 * 60.00882 * 13 12 10 38 38 H 1.08004 * 118.17468 * 0.87426 * 15 14 13 39 39 H 1.08990 * 109.52373 * 108.92338 * 16 15 14 40 40 H 1.09003 * 109.52135 * 229.11425 * 16 15 14 41 41 H 0.97000 * 120.00507 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.77870 * 57.80495 * 26 17 16 43 43 H 1.09001 * 109.77973 * 178.61540 * 26 17 16 44 44 H 1.08991 * 109.31838 * 281.29691 * 27 14 13 45 45 H 1.09000 * 109.31246 * 40.72407 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4425 0.0249 5 6 1.5017 2.1737 1.2314 6 6 2.0837 1.5393 2.4962 7 9 3.4793 1.5108 2.4038 8 9 1.7055 2.2931 3.6125 9 9 1.5984 0.2339 2.6288 10 6 1.5660 2.1429 -1.2473 11 8 0.7717 3.0558 -1.1655 12 7 2.0206 1.7513 -2.4542 13 6 1.6402 2.4960 -3.6571 14 6 2.2757 1.8572 -4.8651 15 6 1.5719 0.9998 -5.5325 16 6 2.0784 0.2703 -6.7453 17 7 3.3468 0.8750 -7.1773 18 6 3.6103 1.1101 -8.5004 19 1 4.2602 1.9243 -8.7852 20 6 3.0419 0.3022 -9.4756 21 7 2.2219 -0.6679 -9.1307 22 14 3.4408 0.5915 -11.2773 23 1 4.3807 1.7348 -11.3989 24 1 4.0677 -0.6280 -11.8476 25 1 2.1907 0.8980 -12.0181 26 6 4.3226 1.2180 -6.1281 27 6 3.6764 2.2644 -5.2130 28 1 -0.3634 0.4470 -0.9254 29 1 -0.3634 -1.0248 0.0757 30 1 -0.3633 0.5780 0.8497 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7907 3.2237 1.1856 34 1 0.4147 2.0967 1.2535 35 1 2.5995 0.9764 -2.5263 36 1 0.5558 2.4804 -3.7664 37 1 1.9817 3.5273 -3.5691 38 1 0.5646 0.7975 -5.1995 39 1 2.2406 -0.7787 -6.4980 40 1 1.3459 0.3470 -7.5488 41 1 1.8250 -1.2328 -9.8120 42 1 4.5758 0.3266 -5.5542 43 1 5.2224 1.6329 -6.5826 44 1 3.6562 3.2289 -5.7202 45 1 4.2636 2.3531 -4.2990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279675425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:45 Heat of formation + Delta-G solvation = -166.007787 kcal Electronic energy + Delta-G solvation = -29400.905024 eV Core-core repulsion = 24810.821823 eV Total energy + Delta-G solvation = -4590.083201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.47734 -47.96811 -47.91304 -40.25373 -37.89996 -36.02462 -35.02074 -32.95016 -31.08437 -30.88289 -29.74549 -27.89783 -26.40818 -24.23476 -23.80502 -22.78198 -22.21200 -21.09960 -19.96215 -18.94768 -18.89090 -17.72316 -17.60770 -16.88442 -16.14264 -16.03625 -15.70215 -15.31855 -15.15122 -14.78911 -14.48554 -14.40188 -14.28987 -14.09667 -14.03302 -13.83934 -13.70967 -13.43634 -13.34943 -13.25294 -12.89314 -12.54652 -12.26225 -12.10390 -12.02590 -11.64380 -11.54688 -11.42502 -11.31942 -11.09960 -10.90112 -10.84004 -10.39403 -10.32670 -9.94864 -9.91919 -9.63563 -9.05399 -8.75088 -8.08467 -6.72887 -5.84624 -3.30862 2.33665 2.49085 2.59237 3.27393 3.33680 3.41067 3.42714 3.55338 3.72161 3.74102 4.27714 4.39829 4.43325 4.52198 4.82289 4.93636 5.07113 5.11770 5.17210 5.31050 5.37991 5.38823 5.46287 5.52798 5.72561 5.75932 5.78288 5.88646 6.00959 6.03583 6.12156 6.28578 6.38346 6.48666 6.69653 6.82495 7.14573 7.27762 7.31243 7.47397 7.70421 7.82244 8.10180 8.38061 9.16652 9.76033 10.35508 11.23963 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.002151 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.589303 B =13015.285262 C =13165.777621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.134 4.134 3 C -0.113 4.113 4 H 0.110 0.890 5 C -0.152 4.152 6 C 0.453 3.547 7 F -0.183 7.183 8 F -0.184 7.184 9 F -0.178 7.178 10 C 0.523 3.477 11 O -0.544 6.544 12 N -0.716 5.716 13 C 0.158 3.842 14 C -0.172 4.172 15 C -0.121 4.121 16 C 0.190 3.810 17 N -0.597 5.597 18 C -0.245 4.245 19 H 0.068 0.932 20 C 0.002 3.998 21 N -0.913 5.913 22 Si 0.907 3.093 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.144 3.856 27 C -0.090 4.090 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.039 0.961 40 H 0.106 0.894 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 2.216 22.327 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.172 4.172 3 C -0.135 4.135 4 H 0.128 0.872 5 C -0.190 4.190 6 C 0.399 3.601 7 F -0.165 7.165 8 F -0.165 7.165 9 F -0.160 7.160 10 C 0.308 3.692 11 O -0.422 6.422 12 N -0.366 5.366 13 C 0.035 3.965 14 C -0.173 4.173 15 C -0.142 4.142 16 C 0.065 3.935 17 N -0.321 5.321 18 C -0.375 4.375 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.558 5.558 22 Si 0.737 3.263 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.017 3.983 27 C -0.129 4.129 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.237 0.763 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.056 0.944 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.579 2.777 22.250 22.478 hybrid contribution 0.467 -0.341 -0.748 0.946 sum -1.112 2.436 21.502 21.668 Atomic orbital electron populations 1.21859 0.94834 1.02330 1.02294 1.21873 0.97444 0.93261 1.04613 1.21367 1.02919 0.96871 0.92325 0.87229 1.22769 1.04892 1.02336 0.89001 1.20595 0.76242 0.76752 0.86497 1.93186 1.30587 1.96366 1.96335 1.93195 1.91099 1.76110 1.56122 1.93132 1.87780 1.38856 1.96210 1.20134 0.81079 0.83410 0.84561 1.90711 1.33816 1.30693 1.87012 1.46161 1.51590 1.32724 1.06166 1.20478 0.98937 0.94954 0.82087 1.20469 0.97716 1.01867 0.97214 1.23397 0.97799 0.95151 0.97863 1.19957 0.89168 0.92696 0.91691 1.44107 1.12912 1.73017 1.02026 1.19229 1.27368 1.09293 0.81568 0.91394 1.25187 0.99724 0.96038 0.98619 1.69905 1.33006 1.20830 1.32080 0.86133 0.77814 0.77461 0.84884 1.20292 1.21535 1.21664 1.20999 0.92443 0.94533 0.90303 1.20779 0.92754 1.00486 0.98858 0.92362 0.91931 0.92381 0.90458 0.89199 0.86519 0.86009 0.76275 0.91593 0.91642 0.88925 0.94371 0.87601 0.93534 0.95852 0.92490 0.91837 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.23 37.16 0.34 -0.97 16 2 C -0.13 -1.03 5.12 -26.73 -0.14 -1.17 16 3 C -0.11 -0.94 2.40 -91.77 -0.22 -1.16 16 4 H 0.11 0.77 7.50 -51.93 -0.39 0.38 16 5 C -0.15 -1.20 3.91 -26.73 -0.10 -1.31 16 6 C 0.45 3.68 3.11 37.16 0.12 3.80 16 7 F -0.18 -1.60 16.47 2.25 0.04 -1.56 16 8 F -0.18 -1.65 17.32 2.25 0.04 -1.61 16 9 F -0.18 -1.49 14.14 2.25 0.03 -1.46 16 10 C 0.52 6.03 5.96 -10.99 -0.07 5.96 16 11 O -0.54 -8.09 16.00 5.55 0.09 -8.00 16 12 N -0.72 -8.28 5.53 -61.47 -0.34 -8.62 16 13 C 0.16 2.20 5.67 -5.19 -0.03 2.17 16 14 C -0.17 -2.79 5.22 -100.99 -0.53 -3.32 16 15 C -0.12 -2.21 9.47 -35.78 -0.34 -2.55 16 16 C 0.19 4.34 5.21 -5.10 -0.03 4.32 16 17 N -0.60 -14.44 3.01 -173.56 -0.52 -14.96 16 18 C -0.25 -6.54 9.71 -15.06 -0.15 -6.68 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C 0.00 0.05 5.33 -17.43 -0.09 -0.04 16 21 N -0.91 -25.50 10.54 55.49 0.58 -24.92 16 22 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.14 2.84 6.59 -3.44 -0.02 2.81 16 27 C -0.09 -1.48 5.95 -28.09 -0.17 -1.65 16 28 H 0.06 0.59 7.41 -51.92 -0.38 0.20 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 6.07 -51.93 -0.32 0.15 16 31 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 32 H 0.09 0.65 5.59 -51.93 -0.29 0.36 16 33 H 0.12 0.91 8.05 -51.93 -0.42 0.49 16 34 H 0.12 0.97 6.04 -51.93 -0.31 0.65 16 35 H 0.40 4.07 8.18 -40.82 -0.33 3.74 16 36 H 0.07 0.97 7.78 -51.93 -0.40 0.57 16 37 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 38 H 0.09 1.53 7.73 -52.48 -0.41 1.12 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.11 2.75 6.22 -51.93 -0.32 2.42 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -29.57 368.07 -7.46 -37.03 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.48 Total: 2.13 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.42 Total: 0.21 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.28 Total: -48.50 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.09 Total: -8.00 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.11 Total: -4.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.57 -7.46 -37.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279675425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.980 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds