Wall clock time and date at job start Tue Mar 31 2020 17:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47292 * 2 1 4 4 H 1.09005 * 109.47154 * 178.61080 * 3 2 1 5 5 C 1.53002 * 109.47140 * 58.61083 * 3 2 1 6 6 C 1.53002 * 109.47011 * 65.03184 * 5 3 2 7 7 F 1.39902 * 109.47000 * 53.79796 * 6 5 3 8 8 F 1.39900 * 109.47439 * 173.80295 * 6 5 3 9 9 F 1.39903 * 109.46890 * 293.80191 * 6 5 3 10 10 C 1.50702 * 109.47204 * 298.61221 * 3 2 1 11 11 O 1.21284 * 119.99997 * 113.42755 * 10 3 2 12 12 N 1.34776 * 120.00141 * 293.69733 * 10 3 2 13 13 C 1.46500 * 119.99934 * 184.65476 * 12 10 3 14 14 C 1.50707 * 109.46549 * 180.02562 * 13 12 10 15 15 C 1.29454 * 117.69270 * 95.00900 * 14 13 12 16 16 C 1.50321 * 123.65468 * 180.85688 * 15 14 13 17 17 N 1.47012 * 109.15929 * 349.01640 * 16 15 14 18 18 C 1.36937 * 121.37349 * 222.96557 * 17 16 15 19 19 H 1.07995 * 119.99989 * 150.97429 * 18 17 16 20 20 C 1.38816 * 120.00266 * 330.98332 * 18 17 16 21 21 N 1.31621 * 119.99813 * 1.78353 * 20 18 17 22 22 Si 1.86790 * 120.00217 * 181.78881 * 20 18 17 23 23 H 1.48498 * 109.47223 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.47345 * 119.99806 * 22 20 18 25 25 H 1.48506 * 109.47261 * 239.99540 * 22 20 18 26 26 C 1.47333 * 117.25221 * 42.95192 * 17 16 15 27 27 C 1.49965 * 117.69605 * 274.73803 * 14 13 12 28 28 H 1.09007 * 109.47160 * 64.21929 * 1 2 3 29 29 H 1.08996 * 109.47362 * 184.22533 * 1 2 3 30 30 H 1.09001 * 109.46903 * 304.22531 * 1 2 3 31 31 H 1.09004 * 109.46731 * 240.00200 * 2 1 3 32 32 H 1.08995 * 109.46989 * 120.00445 * 2 1 3 33 33 H 1.08999 * 109.47007 * 185.02769 * 5 3 2 34 34 H 1.08994 * 109.47450 * 305.03244 * 5 3 2 35 35 H 0.96998 * 119.99960 * 4.66293 * 12 10 3 36 36 H 1.08999 * 109.47556 * 300.00458 * 13 12 10 37 37 H 1.08996 * 109.47048 * 60.00882 * 13 12 10 38 38 H 1.08004 * 118.17468 * 0.87426 * 15 14 13 39 39 H 1.08990 * 109.52373 * 108.92338 * 16 15 14 40 40 H 1.09003 * 109.52135 * 229.11425 * 16 15 14 41 41 H 0.97000 * 120.00507 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.77870 * 57.80495 * 26 17 16 43 43 H 1.09001 * 109.77973 * 178.61540 * 26 17 16 44 44 H 1.08991 * 109.31838 * 281.29691 * 27 14 13 45 45 H 1.09000 * 109.31246 * 40.72407 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4425 0.0249 5 6 1.5017 2.1737 1.2314 6 6 2.0837 1.5393 2.4962 7 9 3.4793 1.5108 2.4038 8 9 1.7055 2.2931 3.6125 9 9 1.5984 0.2339 2.6288 10 6 1.5660 2.1429 -1.2473 11 8 0.7717 3.0558 -1.1655 12 7 2.0206 1.7513 -2.4542 13 6 1.6402 2.4960 -3.6571 14 6 2.2757 1.8572 -4.8651 15 6 1.5719 0.9998 -5.5325 16 6 2.0784 0.2703 -6.7453 17 7 3.3468 0.8750 -7.1773 18 6 3.6103 1.1101 -8.5004 19 1 4.2602 1.9243 -8.7852 20 6 3.0419 0.3022 -9.4756 21 7 2.2219 -0.6679 -9.1307 22 14 3.4408 0.5915 -11.2773 23 1 4.3807 1.7348 -11.3989 24 1 4.0677 -0.6280 -11.8476 25 1 2.1907 0.8980 -12.0181 26 6 4.3226 1.2180 -6.1281 27 6 3.6764 2.2644 -5.2130 28 1 -0.3634 0.4470 -0.9254 29 1 -0.3634 -1.0248 0.0757 30 1 -0.3633 0.5780 0.8497 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.7907 3.2237 1.1856 34 1 0.4147 2.0967 1.2535 35 1 2.5995 0.9764 -2.5263 36 1 0.5558 2.4804 -3.7664 37 1 1.9817 3.5273 -3.5691 38 1 0.5646 0.7975 -5.1995 39 1 2.2406 -0.7787 -6.4980 40 1 1.3459 0.3470 -7.5488 41 1 1.8250 -1.2328 -9.8120 42 1 4.5758 0.3266 -5.5542 43 1 5.2224 1.6329 -6.5826 44 1 3.6562 3.2289 -5.7202 45 1 4.2636 2.3531 -4.2990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279675425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:44 Heat of formation + Delta-G solvation = -182.702219 kcal Electronic energy + Delta-G solvation = -29401.628949 eV Core-core repulsion = 24810.821823 eV Total energy + Delta-G solvation = -4590.807126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.13114 -48.62598 -48.56976 -41.19515 -39.38893 -36.87852 -36.32405 -34.52672 -32.60534 -31.66239 -31.36983 -29.06562 -27.63374 -25.75752 -24.44990 -24.33829 -23.23499 -22.58741 -20.83250 -19.64663 -19.55593 -19.44954 -18.29875 -17.95385 -17.23753 -17.04977 -16.92211 -16.79767 -16.13151 -15.71872 -15.48366 -15.43986 -15.24171 -15.12559 -15.06024 -14.92577 -14.69952 -14.65827 -14.39666 -14.14715 -13.93416 -13.82388 -13.54540 -13.28790 -13.17580 -12.93619 -12.76050 -12.69087 -12.62165 -12.28974 -12.18332 -12.00592 -11.97705 -11.74469 -11.73087 -11.24505 -10.88698 -10.70352 -10.08504 -9.61590 -8.65959 -7.86940 -5.35499 1.19380 1.46861 1.48367 1.58147 1.58704 1.74394 2.36559 2.50204 2.88761 3.00726 3.09666 3.30594 3.58120 3.65881 3.74936 3.81534 3.91973 3.99713 4.14807 4.29644 4.43987 4.46584 4.55503 4.56577 4.67019 4.75470 4.77898 4.83414 4.87312 4.95055 5.11183 5.13043 5.14309 5.25936 5.36239 5.39407 5.45492 5.58338 5.62341 5.79750 6.20968 6.39823 6.53635 7.16598 7.19096 7.84498 8.38925 9.19488 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.029667 B = 0.002151 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.589303 B =13015.285262 C =13165.777621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.132 4.132 3 C -0.106 4.106 4 H 0.130 0.870 5 C -0.149 4.149 6 C 0.459 3.541 7 F -0.185 7.185 8 F -0.189 7.189 9 F -0.179 7.179 10 C 0.526 3.474 11 O -0.578 6.578 12 N -0.710 5.710 13 C 0.168 3.832 14 C -0.142 4.142 15 C -0.142 4.142 16 C 0.201 3.799 17 N -0.618 5.618 18 C -0.255 4.255 19 H 0.069 0.931 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.293 1.293 26 C 0.139 3.861 27 C -0.084 4.084 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.413 0.587 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.011 0.989 40 H 0.067 0.933 41 H 0.249 0.751 42 H 0.030 0.970 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 2.988 23.955 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C -0.127 4.127 4 H 0.148 0.852 5 C -0.187 4.187 6 C 0.405 3.595 7 F -0.166 7.166 8 F -0.170 7.170 9 F -0.160 7.160 10 C 0.313 3.687 11 O -0.458 6.458 12 N -0.361 5.361 13 C 0.045 3.955 14 C -0.143 4.143 15 C -0.162 4.162 16 C 0.076 3.924 17 N -0.342 5.342 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.247 4.247 21 N -0.587 5.587 22 Si 0.798 3.202 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.220 1.220 26 C 0.013 3.987 27 C -0.123 4.123 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.249 0.751 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.029 0.971 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.510 3.548 23.908 24.175 hybrid contribution 0.181 -0.549 -1.181 1.315 sum -0.329 3.000 22.727 22.927 Atomic orbital electron populations 1.21863 0.95533 1.02630 1.01374 1.21891 0.96776 0.92854 1.05421 1.21360 1.04023 0.96717 0.90594 0.85229 1.22739 1.04859 1.02437 0.88703 1.20527 0.76056 0.76598 0.86287 1.93185 1.30760 1.96369 1.96324 1.93188 1.91151 1.76275 1.56428 1.93132 1.87780 1.38903 1.96205 1.20592 0.80177 0.82821 0.85115 1.90706 1.35292 1.32305 1.87459 1.45999 1.51738 1.32858 1.05533 1.20216 0.98349 0.95060 0.81860 1.20598 0.97216 0.99546 0.96913 1.23024 0.99121 0.97055 0.97041 1.19543 0.88233 0.92185 0.92411 1.44385 1.14349 1.73208 1.02307 1.19533 1.26776 1.09122 0.83118 0.91322 1.25916 1.00055 0.96290 1.02403 1.70101 1.34001 1.21769 1.32780 0.85162 0.77408 0.77364 0.80289 1.19108 1.21800 1.21955 1.21189 0.91980 0.95667 0.89825 1.20724 0.92981 0.98929 0.99654 0.94275 0.91268 0.92104 0.89792 0.88240 0.86282 0.86106 0.75095 0.92238 0.91201 0.87320 0.97087 0.91463 0.94105 0.95171 0.92338 0.92078 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.23 71.98 0.66 -1.73 16 2 C -0.13 -1.70 5.12 30.59 0.16 -1.54 16 3 C -0.11 -1.48 2.40 -11.54 -0.03 -1.51 16 4 H 0.13 1.35 7.50 -2.38 -0.02 1.34 16 5 C -0.15 -2.05 3.91 30.60 0.12 -1.93 16 6 C 0.46 6.46 3.11 71.98 0.22 6.69 16 7 F -0.18 -2.76 16.47 44.97 0.74 -2.02 16 8 F -0.19 -3.07 17.32 44.97 0.78 -2.29 16 9 F -0.18 -2.58 14.14 44.97 0.64 -1.95 16 10 C 0.53 10.89 5.96 87.66 0.52 11.41 16 11 O -0.58 -16.18 16.00 -3.04 -0.05 -16.23 16 12 N -0.71 -14.49 5.53 -466.78 -2.58 -17.07 16 13 C 0.17 4.29 5.67 85.64 0.49 4.78 16 14 C -0.14 -4.33 5.22 -15.14 -0.08 -4.41 16 15 C -0.14 -5.12 9.47 27.11 0.26 -4.86 16 16 C 0.20 9.50 5.21 85.42 0.44 9.95 16 17 N -0.62 -30.16 3.01 -703.03 -2.12 -32.27 16 18 C -0.26 -13.77 9.71 84.03 0.82 -12.95 16 19 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 20 C -0.05 -2.86 5.33 84.86 0.45 -2.41 16 21 N -0.94 -54.28 10.54 21.65 0.23 -54.05 16 22 Si 0.97 44.29 29.55 68.60 2.03 46.31 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 26 C 0.14 5.29 6.59 86.32 0.57 5.86 16 27 C -0.08 -2.56 5.95 29.72 0.18 -2.38 16 28 H 0.04 0.74 7.41 -2.38 -0.02 0.73 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.88 6.07 -2.39 -0.01 0.86 16 31 H 0.08 0.99 7.85 -2.38 -0.02 0.97 16 32 H 0.10 1.15 5.59 -2.39 -0.01 1.14 16 33 H 0.12 1.62 8.05 -2.39 -0.02 1.60 16 34 H 0.12 1.72 6.04 -2.39 -0.01 1.70 16 35 H 0.41 6.99 8.18 -92.71 -0.76 6.24 16 36 H 0.06 1.64 7.78 -2.39 -0.02 1.63 16 37 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 38 H 0.11 3.54 7.73 -2.91 -0.02 3.52 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 3.67 6.22 -2.39 -0.01 3.65 16 41 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 42 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.74 368.07 4.71 -60.03 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.26 Total: 14.57 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 4.78 Total: 4.97 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -4.47 Total: -103.40 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.05 Total: -16.23 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 2.16 Total: -6.26 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -64.74 4.71 -60.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279675425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.674 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds