Wall clock time and date at job start Tue Mar 31 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46923 * 2 1 4 4 H 1.08995 * 109.47311 * 305.10796 * 3 2 1 5 5 C 1.52999 * 109.47050 * 65.11194 * 3 2 1 6 6 C 1.53004 * 109.47094 * 186.36601 * 5 3 2 7 7 F 1.39901 * 109.47329 * 54.49798 * 6 5 3 8 8 F 1.39900 * 109.46699 * 294.49843 * 6 5 3 9 9 F 1.39895 * 109.47027 * 174.49997 * 6 5 3 10 10 C 1.50703 * 109.46871 * 185.10585 * 3 2 1 11 11 O 1.21284 * 120.00373 * 287.29420 * 10 3 2 12 12 N 1.34781 * 119.99945 * 107.30108 * 10 3 2 13 13 C 1.46498 * 119.99925 * 180.02562 * 12 10 3 14 14 C 1.50703 * 109.46870 * 180.02562 * 13 12 10 15 15 C 1.29454 * 117.69652 * 94.99680 * 14 13 12 16 16 C 1.50316 * 123.65101 * 180.85628 * 15 14 13 17 17 N 1.47007 * 109.16638 * 349.02183 * 16 15 14 18 18 C 1.36935 * 121.37830 * 222.96755 * 17 16 15 19 19 H 1.07994 * 120.00261 * 157.34005 * 18 17 16 20 20 C 1.38819 * 119.99793 * 337.34511 * 18 17 16 21 21 N 1.31622 * 119.99949 * 345.87714 * 20 18 17 22 22 Si 1.86800 * 119.99935 * 165.87931 * 20 18 17 23 23 H 1.48504 * 109.47023 * 94.96882 * 22 20 18 24 24 H 1.48502 * 109.46944 * 214.96859 * 22 20 18 25 25 H 1.48504 * 109.47293 * 334.97235 * 22 20 18 26 26 C 1.47339 * 117.25145 * 42.94786 * 17 16 15 27 27 C 1.49971 * 117.69098 * 274.73529 * 14 13 12 28 28 H 1.09003 * 109.47001 * 178.85332 * 1 2 3 29 29 H 1.09004 * 109.46702 * 298.84618 * 1 2 3 30 30 H 1.08994 * 109.46980 * 58.84489 * 1 2 3 31 31 H 1.09004 * 109.46894 * 240.00354 * 2 1 3 32 32 H 1.08994 * 109.47381 * 120.00454 * 2 1 3 33 33 H 1.08997 * 109.47583 * 66.35983 * 5 3 2 34 34 H 1.09003 * 109.46479 * 306.36019 * 5 3 2 35 35 H 0.97003 * 119.99618 * 359.97438 * 12 10 3 36 36 H 1.09005 * 109.47180 * 299.99437 * 13 12 10 37 37 H 1.08996 * 109.47591 * 59.99497 * 13 12 10 38 38 H 1.08002 * 118.17390 * 0.88285 * 15 14 13 39 39 H 1.09004 * 109.52450 * 108.92858 * 16 15 14 40 40 H 1.09000 * 109.52611 * 229.11650 * 16 15 14 41 41 H 0.96999 * 119.99587 * 179.97438 * 21 20 18 42 42 H 1.09007 * 109.77799 * 57.80751 * 26 17 16 43 43 H 1.08995 * 109.78113 * 178.61528 * 26 17 16 44 44 H 1.09003 * 109.31140 * 281.28979 * 27 14 13 45 45 H 1.09000 * 109.31241 * 40.71881 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9821 -0.8407 5 6 1.6376 2.1257 1.3085 6 6 2.0068 3.6091 1.2439 7 9 1.4325 4.1835 0.1048 8 9 3.3982 3.7410 1.1817 9 9 1.5274 4.2591 2.3862 10 6 3.5417 1.4444 -0.1265 11 8 4.2298 1.1033 0.8122 12 7 4.1201 1.8253 -1.2827 13 6 5.5799 1.8265 -1.4058 14 6 5.9672 2.2905 -2.7864 15 6 6.2486 3.5443 -2.9429 16 6 6.6320 4.1535 -4.2625 17 7 6.8852 3.0800 -5.2343 18 6 7.9546 3.1287 -6.0882 19 1 8.3414 2.2184 -6.5217 20 6 8.5416 4.3484 -6.3964 21 7 7.9194 5.4708 -6.1039 22 14 10.2144 4.3966 -7.2264 23 1 10.0346 4.5130 -8.6959 24 1 10.9810 5.5664 -6.7273 25 1 10.9572 3.1488 -6.9159 26 6 5.9409 1.9490 -5.2515 27 6 6.0051 1.2658 -3.8808 28 1 -0.3633 -1.0275 -0.0206 29 1 -0.3633 0.4958 0.9002 30 1 -0.3633 0.5316 -0.8794 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1631 1.6563 2.1401 34 1 0.5622 2.0250 1.4551 35 1 3.5698 2.0978 -2.0336 36 1 6.0066 2.5010 -0.6633 37 1 5.9594 0.8181 -1.2412 38 1 6.2059 4.1885 -2.0770 39 1 5.8199 4.7858 -4.6215 40 1 7.5340 4.7529 -4.1387 41 1 8.3298 6.3230 -6.3190 42 1 4.9311 2.3144 -5.4387 43 1 6.2277 1.2409 -6.0288 44 1 6.9275 0.6901 -3.8038 45 1 5.1538 0.5935 -3.7748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279675427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:48 Heat of formation + Delta-G solvation = -169.754397 kcal Electronic energy + Delta-G solvation = -29867.423740 eV Core-core repulsion = 25277.178074 eV Total energy + Delta-G solvation = -4590.245666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.28241 -47.80994 -47.71128 -40.10329 -37.88512 -36.09311 -34.93241 -32.89633 -31.34268 -30.91338 -29.73436 -27.87514 -26.39532 -24.22122 -23.49351 -22.77837 -21.97148 -21.04587 -20.25493 -18.77695 -18.56656 -17.90030 -17.70641 -17.41477 -16.00101 -15.69844 -15.34838 -15.07133 -14.75642 -14.63149 -14.57670 -14.39043 -14.18903 -13.92448 -13.88480 -13.87802 -13.79729 -13.48376 -13.46302 -13.18564 -12.87961 -12.39353 -12.30642 -12.23567 -12.05456 -11.98564 -11.58728 -11.43265 -11.30382 -11.18934 -10.92019 -10.74931 -10.41018 -10.32455 -9.90274 -9.84954 -9.60446 -8.99555 -8.71888 -8.06120 -6.78476 -5.81165 -3.19926 2.50325 2.52849 2.56777 3.36591 3.39217 3.43916 3.46114 3.53719 3.67032 3.85726 4.38706 4.45258 4.47586 4.51111 4.77963 4.84890 4.94336 5.06220 5.15645 5.26011 5.32264 5.35315 5.39084 5.56149 5.59207 5.65883 5.80970 5.83458 5.94018 6.05060 6.14577 6.30231 6.42604 6.51120 6.70306 6.83930 7.16046 7.26455 7.31473 7.52487 7.70783 7.81985 8.16963 8.35590 9.17588 9.80188 10.37112 11.28938 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.002671 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.164120 B =10478.734690 C =11174.496977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.101 0.899 5 C -0.156 4.156 6 C 0.446 3.554 7 F -0.183 7.183 8 F -0.173 7.173 9 F -0.185 7.185 10 C 0.510 3.490 11 O -0.538 6.538 12 N -0.714 5.714 13 C 0.158 3.842 14 C -0.170 4.170 15 C -0.122 4.122 16 C 0.192 3.808 17 N -0.596 5.596 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.003 4.003 21 N -0.911 5.911 22 Si 0.906 3.094 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.144 3.856 27 C -0.089 4.089 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.254 0.746 42 H 0.023 0.977 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -8.460 14.301 23.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C -0.133 4.133 4 H 0.120 0.880 5 C -0.194 4.194 6 C 0.392 3.608 7 F -0.165 7.165 8 F -0.155 7.155 9 F -0.167 7.167 10 C 0.295 3.705 11 O -0.416 6.416 12 N -0.364 5.364 13 C 0.036 3.964 14 C -0.170 4.170 15 C -0.143 4.143 16 C 0.067 3.933 17 N -0.319 5.319 18 C -0.374 4.374 19 H 0.087 0.913 20 C -0.201 4.201 21 N -0.557 5.557 22 Si 0.736 3.264 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.128 4.128 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.236 0.764 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.117 0.883 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.446 -8.504 14.918 23.777 hybrid contribution 0.689 0.644 -0.720 1.187 sum -15.757 -7.860 14.198 22.619 Atomic orbital electron populations 1.21871 0.94685 1.02490 1.02259 1.21391 0.96449 0.92726 1.03946 1.21385 0.93900 0.99878 0.98147 0.88031 1.22930 1.06159 0.88663 1.01635 1.20641 0.75229 0.91390 0.73532 1.93189 1.84579 1.87092 1.51599 1.93266 1.29666 1.96629 1.95911 1.93182 1.88142 1.84100 1.51259 1.20365 0.89703 0.77421 0.82996 1.90697 1.64729 1.47833 1.38299 1.46224 1.08484 1.66994 1.14738 1.20467 0.78992 1.01369 0.95622 1.20484 1.06633 0.95861 0.94052 1.23317 0.94903 0.95416 1.00616 1.19826 1.00773 0.89849 0.82832 1.44148 1.27938 1.20687 1.39162 1.19208 1.05031 0.92390 1.20732 0.91286 1.24975 0.99530 0.95545 1.00012 1.69992 1.37180 0.96763 1.51774 0.86216 0.83971 0.77207 0.79029 1.21518 1.21565 1.20488 1.20984 0.92957 0.90700 0.93628 1.20778 1.00332 0.96101 0.95590 0.91893 0.92358 0.92089 0.90557 0.90452 0.85961 0.86215 0.76400 0.91588 0.91595 0.88793 0.94175 0.88344 0.93598 0.95881 0.92495 0.91758 0.92983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 9.65 37.16 0.36 -0.39 16 2 C -0.11 -0.72 5.38 -26.73 -0.14 -0.86 16 3 C -0.11 -0.93 2.12 -91.77 -0.19 -1.12 16 4 H 0.10 0.73 7.31 -51.93 -0.38 0.35 16 5 C -0.16 -1.20 4.62 -26.73 -0.12 -1.33 16 6 C 0.45 4.66 3.14 37.16 0.12 4.78 16 7 F -0.18 -1.97 16.47 2.25 0.04 -1.93 16 8 F -0.17 -2.35 15.15 2.25 0.03 -2.32 16 9 F -0.19 -1.97 17.32 2.25 0.04 -1.93 16 10 C 0.51 6.31 4.82 -10.98 -0.05 6.26 16 11 O -0.54 -8.50 16.13 5.55 0.09 -8.41 16 12 N -0.71 -9.01 5.55 -61.47 -0.34 -9.35 16 13 C 0.16 2.36 5.66 -5.19 -0.03 2.33 16 14 C -0.17 -2.87 5.22 -100.99 -0.53 -3.40 16 15 C -0.12 -2.32 9.47 -35.78 -0.34 -2.66 16 16 C 0.19 4.52 5.24 -5.10 -0.03 4.49 16 17 N -0.60 -14.71 3.01 -173.56 -0.52 -15.23 16 18 C -0.24 -6.63 9.73 -15.06 -0.15 -6.77 16 19 H 0.07 1.83 7.87 -52.49 -0.41 1.42 16 20 C 0.00 -0.09 5.06 -17.43 -0.09 -0.18 16 21 N -0.91 -26.04 10.89 55.49 0.60 -25.43 16 22 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 C 0.14 2.89 6.59 -3.44 -0.02 2.87 16 27 C -0.09 -1.51 5.95 -28.09 -0.17 -1.67 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.23 6.49 -51.93 -0.34 -0.10 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.12 0.99 7.73 -51.93 -0.40 0.59 16 34 H 0.12 0.58 6.32 -51.93 -0.33 0.25 16 35 H 0.40 4.46 8.34 -40.82 -0.34 4.12 16 36 H 0.07 1.06 7.78 -51.93 -0.40 0.65 16 37 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 38 H 0.09 1.65 7.73 -52.49 -0.41 1.24 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.10 2.60 6.25 -51.93 -0.32 2.28 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -31.34 373.42 -7.53 -38.87 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.69 Total: 1.17 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.39 Total: 2.34 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.26 Total: -50.01 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.41 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.11 Total: -6.18 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.34 -7.53 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279675427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.886 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds