Wall clock time and date at job start Tue Mar 31 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46923 * 2 1 4 4 H 1.08995 * 109.47311 * 305.10796 * 3 2 1 5 5 C 1.52999 * 109.47050 * 65.11194 * 3 2 1 6 6 C 1.53004 * 109.47094 * 186.36601 * 5 3 2 7 7 F 1.39901 * 109.47329 * 54.49798 * 6 5 3 8 8 F 1.39900 * 109.46699 * 294.49843 * 6 5 3 9 9 F 1.39895 * 109.47027 * 174.49997 * 6 5 3 10 10 C 1.50703 * 109.46871 * 185.10585 * 3 2 1 11 11 O 1.21284 * 120.00373 * 287.29420 * 10 3 2 12 12 N 1.34781 * 119.99945 * 107.30108 * 10 3 2 13 13 C 1.46498 * 119.99925 * 180.02562 * 12 10 3 14 14 C 1.50703 * 109.46870 * 180.02562 * 13 12 10 15 15 C 1.29454 * 117.69652 * 94.99680 * 14 13 12 16 16 C 1.50316 * 123.65101 * 180.85628 * 15 14 13 17 17 N 1.47007 * 109.16638 * 349.02183 * 16 15 14 18 18 C 1.36935 * 121.37830 * 222.96755 * 17 16 15 19 19 H 1.07994 * 120.00261 * 157.34005 * 18 17 16 20 20 C 1.38819 * 119.99793 * 337.34511 * 18 17 16 21 21 N 1.31622 * 119.99949 * 345.87714 * 20 18 17 22 22 Si 1.86800 * 119.99935 * 165.87931 * 20 18 17 23 23 H 1.48504 * 109.47023 * 94.96882 * 22 20 18 24 24 H 1.48502 * 109.46944 * 214.96859 * 22 20 18 25 25 H 1.48504 * 109.47293 * 334.97235 * 22 20 18 26 26 C 1.47339 * 117.25145 * 42.94786 * 17 16 15 27 27 C 1.49971 * 117.69098 * 274.73529 * 14 13 12 28 28 H 1.09003 * 109.47001 * 178.85332 * 1 2 3 29 29 H 1.09004 * 109.46702 * 298.84618 * 1 2 3 30 30 H 1.08994 * 109.46980 * 58.84489 * 1 2 3 31 31 H 1.09004 * 109.46894 * 240.00354 * 2 1 3 32 32 H 1.08994 * 109.47381 * 120.00454 * 2 1 3 33 33 H 1.08997 * 109.47583 * 66.35983 * 5 3 2 34 34 H 1.09003 * 109.46479 * 306.36019 * 5 3 2 35 35 H 0.97003 * 119.99618 * 359.97438 * 12 10 3 36 36 H 1.09005 * 109.47180 * 299.99437 * 13 12 10 37 37 H 1.08996 * 109.47591 * 59.99497 * 13 12 10 38 38 H 1.08002 * 118.17390 * 0.88285 * 15 14 13 39 39 H 1.09004 * 109.52450 * 108.92858 * 16 15 14 40 40 H 1.09000 * 109.52611 * 229.11650 * 16 15 14 41 41 H 0.96999 * 119.99587 * 179.97438 * 21 20 18 42 42 H 1.09007 * 109.77799 * 57.80751 * 26 17 16 43 43 H 1.08995 * 109.78113 * 178.61528 * 26 17 16 44 44 H 1.09003 * 109.31140 * 281.28979 * 27 14 13 45 45 H 1.09000 * 109.31241 * 40.71881 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6039 1.9821 -0.8407 5 6 1.6376 2.1257 1.3085 6 6 2.0068 3.6091 1.2439 7 9 1.4325 4.1835 0.1048 8 9 3.3982 3.7410 1.1817 9 9 1.5274 4.2591 2.3862 10 6 3.5417 1.4444 -0.1265 11 8 4.2298 1.1033 0.8122 12 7 4.1201 1.8253 -1.2827 13 6 5.5799 1.8265 -1.4058 14 6 5.9672 2.2905 -2.7864 15 6 6.2486 3.5443 -2.9429 16 6 6.6320 4.1535 -4.2625 17 7 6.8852 3.0800 -5.2343 18 6 7.9546 3.1287 -6.0882 19 1 8.3414 2.2184 -6.5217 20 6 8.5416 4.3484 -6.3964 21 7 7.9194 5.4708 -6.1039 22 14 10.2144 4.3966 -7.2264 23 1 10.0346 4.5130 -8.6959 24 1 10.9810 5.5664 -6.7273 25 1 10.9572 3.1488 -6.9159 26 6 5.9409 1.9490 -5.2515 27 6 6.0051 1.2658 -3.8808 28 1 -0.3633 -1.0275 -0.0206 29 1 -0.3633 0.4958 0.9002 30 1 -0.3633 0.5316 -0.8794 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.1631 1.6563 2.1401 34 1 0.5622 2.0250 1.4551 35 1 3.5698 2.0978 -2.0336 36 1 6.0066 2.5010 -0.6633 37 1 5.9594 0.8181 -1.2412 38 1 6.2059 4.1885 -2.0770 39 1 5.8199 4.7858 -4.6215 40 1 7.5340 4.7529 -4.1387 41 1 8.3298 6.3230 -6.3190 42 1 4.9311 2.3144 -5.4387 43 1 6.2277 1.2409 -6.0288 44 1 6.9275 0.6901 -3.8038 45 1 5.1538 0.5935 -3.7748 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279675427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:47 Heat of formation + Delta-G solvation = -188.379606 kcal Electronic energy + Delta-G solvation = -29868.231390 eV Core-core repulsion = 25277.178074 eV Total energy + Delta-G solvation = -4591.053316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.12965 -48.63818 -48.61053 -41.09392 -39.42196 -36.92093 -36.27568 -34.52324 -32.62752 -31.88684 -31.41734 -29.06959 -27.60357 -25.78047 -24.41589 -24.19512 -23.05683 -22.42993 -21.13934 -19.65004 -19.50313 -19.37719 -18.68947 -18.40212 -17.41583 -17.09740 -16.84362 -16.31620 -15.84242 -15.56191 -15.47991 -15.37996 -15.24378 -15.18654 -15.03993 -15.02526 -14.77780 -14.74503 -14.52494 -14.18080 -13.94535 -13.83481 -13.51032 -13.27776 -12.99764 -12.93080 -12.82218 -12.76959 -12.65199 -12.58853 -12.23184 -12.09722 -11.91007 -11.71475 -11.65052 -11.28722 -10.88966 -10.69779 -10.10596 -9.65154 -8.77053 -7.88163 -5.29229 1.16843 1.46298 1.48149 1.56682 1.57600 1.77473 2.36041 2.50780 2.79377 2.93372 3.07097 3.29086 3.60038 3.61989 3.73912 3.87936 3.92412 3.97826 4.18416 4.29978 4.42980 4.50329 4.53142 4.54125 4.64068 4.71112 4.75224 4.83529 4.90828 4.91509 5.09426 5.19382 5.21256 5.24485 5.36603 5.42240 5.48183 5.48871 5.60238 5.76405 6.15747 6.33260 6.52690 7.12965 7.19964 7.83343 8.36142 9.20085 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019041 B = 0.002671 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.164120 B =10478.734690 C =11174.496977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.105 4.105 4 H 0.118 0.882 5 C -0.148 4.148 6 C 0.440 3.560 7 F -0.185 7.185 8 F -0.196 7.196 9 F -0.188 7.188 10 C 0.508 3.492 11 O -0.574 6.574 12 N -0.711 5.711 13 C 0.168 3.832 14 C -0.139 4.139 15 C -0.144 4.144 16 C 0.205 3.795 17 N -0.616 5.616 18 C -0.255 4.255 19 H 0.072 0.928 20 C -0.057 4.057 21 N -0.941 5.941 22 Si 0.969 3.031 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.270 1.270 26 C 0.138 3.862 27 C -0.083 4.083 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.156 0.844 35 H 0.411 0.589 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.013 0.987 40 H 0.061 0.939 41 H 0.249 0.751 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.747 -10.522 14.903 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.127 4.127 4 H 0.136 0.864 5 C -0.186 4.186 6 C 0.386 3.614 7 F -0.167 7.167 8 F -0.178 7.178 9 F -0.169 7.169 10 C 0.295 3.705 11 O -0.453 6.453 12 N -0.362 5.362 13 C 0.045 3.955 14 C -0.139 4.139 15 C -0.164 4.164 16 C 0.080 3.920 17 N -0.340 5.340 18 C -0.385 4.385 19 H 0.090 0.910 20 C -0.252 4.252 21 N -0.588 5.588 22 Si 0.797 3.203 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.195 1.195 26 C 0.013 3.987 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.138 0.862 34 H 0.173 0.827 35 H 0.247 0.753 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.163 -10.594 15.514 26.131 hybrid contribution 1.153 1.229 -0.894 1.907 sum -17.011 -9.365 14.621 24.307 Atomic orbital electron populations 1.21871 0.92886 1.03203 1.03102 1.21387 0.97864 0.91146 1.03661 1.21451 0.90606 1.01469 0.99144 0.86373 1.23023 1.08301 0.86156 1.01147 1.21121 0.74151 0.92835 0.73325 1.93182 1.84424 1.87346 1.51717 1.93222 1.31711 1.96828 1.96015 1.93174 1.88004 1.84373 1.51385 1.21075 0.91389 0.76038 0.81967 1.90684 1.65986 1.49313 1.39353 1.46116 1.07420 1.67155 1.15547 1.20192 0.80664 1.01121 0.93522 1.20630 1.03289 0.94871 0.95137 1.22943 0.98040 0.96646 0.98818 1.19426 0.98204 0.89521 0.84897 1.44431 1.28525 1.21918 1.39168 1.19555 1.05867 0.92499 1.20557 0.90978 1.25734 1.02747 0.95347 1.01329 1.70164 1.38451 0.96986 1.53217 0.85228 0.80034 0.77088 0.77930 1.21227 1.22092 1.19512 1.21191 0.92201 0.89523 0.95767 1.20724 1.01979 0.96116 0.93300 0.91314 0.91233 0.91542 0.90635 0.91077 0.86232 0.82660 0.75286 0.92754 0.91093 0.87649 0.96982 0.92127 0.94183 0.95250 0.92103 0.91825 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.65 71.98 0.69 -0.22 16 2 C -0.10 -1.07 5.38 30.59 0.16 -0.90 16 3 C -0.11 -1.47 2.12 -11.54 -0.02 -1.49 16 4 H 0.12 1.29 7.31 -2.39 -0.02 1.27 16 5 C -0.15 -1.91 4.62 30.60 0.14 -1.77 16 6 C 0.44 8.51 3.14 71.98 0.23 8.74 16 7 F -0.19 -3.64 16.47 44.97 0.74 -2.90 16 8 F -0.20 -5.22 15.15 44.97 0.68 -4.54 16 9 F -0.19 -3.75 17.32 44.97 0.78 -2.97 16 10 C 0.51 11.62 4.82 87.66 0.42 12.04 16 11 O -0.57 -17.43 16.13 -3.04 -0.05 -17.48 16 12 N -0.71 -16.45 5.55 -466.77 -2.59 -19.04 16 13 C 0.17 4.73 5.66 85.63 0.48 5.22 16 14 C -0.14 -4.50 5.22 -15.14 -0.08 -4.58 16 15 C -0.14 -5.51 9.47 27.10 0.26 -5.25 16 16 C 0.20 9.99 5.24 85.42 0.45 10.44 16 17 N -0.62 -30.76 3.01 -703.03 -2.12 -32.88 16 18 C -0.25 -13.98 9.73 84.04 0.82 -13.16 16 19 H 0.07 3.82 7.87 -2.91 -0.02 3.79 16 20 C -0.06 -3.20 5.06 84.86 0.43 -2.77 16 21 N -0.94 -55.69 10.89 21.65 0.24 -55.45 16 22 Si 0.97 45.14 29.58 68.60 2.03 47.17 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C 0.14 5.40 6.59 86.31 0.57 5.97 16 27 C -0.08 -2.60 5.95 29.72 0.18 -2.42 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.27 6.49 -2.38 -0.02 0.25 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.12 1.69 7.73 -2.39 -0.02 1.67 16 34 H 0.16 0.88 6.32 -2.39 -0.02 0.87 16 35 H 0.41 8.04 8.34 -92.71 -0.77 7.27 16 36 H 0.05 1.69 7.78 -2.38 -0.02 1.67 16 37 H 0.07 1.97 8.11 -2.39 -0.02 1.96 16 38 H 0.11 3.75 7.73 -2.91 -0.02 3.73 16 39 H 0.01 0.65 8.14 -2.38 -0.02 0.64 16 40 H 0.06 3.38 6.25 -2.39 -0.01 3.37 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.03 1.11 8.14 -2.38 -0.02 1.10 16 43 H 0.06 2.30 7.96 -2.39 -0.02 2.28 16 44 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.77 373.42 4.67 -65.10 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.24 Total: 13.15 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 4.73 Total: 9.83 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -4.47 Total: -107.37 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 2.20 Total: -10.40 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -69.77 4.67 -65.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279675427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.280 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds