Wall clock time and date at job start Tue Mar 31 2020 18:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.09002 * 109.46824 * 304.99766 * 3 2 1 5 5 C 1.52995 * 109.47160 * 185.00256 * 3 2 1 6 6 N 1.46503 * 109.47289 * 184.99956 * 5 3 2 7 7 C 1.34775 * 119.99975 * 180.02562 * 6 5 3 8 8 O 1.21587 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.47540 * 119.99785 * 179.97438 * 7 6 5 10 10 C 1.39915 * 120.31607 * 0.02562 * 9 7 6 11 11 C 1.37754 * 120.05227 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.43550 * 359.95623 * 11 10 9 13 13 C 1.38347 * 120.05865 * 0.02562 * 12 11 10 14 14 C 1.38773 * 120.15436 * 0.06781 * 13 12 11 15 15 O 1.36181 * 119.69582 * 179.82544 * 14 13 12 16 16 C 1.42920 * 115.91543 * 68.41846 * 15 14 13 17 17 C 1.52074 * 110.71971 * 275.56618 * 16 15 14 18 18 C 1.52059 * 112.36667 * 64.83633 * 17 16 15 19 19 O 1.36494 * 120.29482 * 180.02562 * 13 12 11 20 20 N 1.46500 * 109.47470 * 64.99840 * 3 2 1 21 21 C 1.36933 * 119.99878 * 275.00828 * 20 3 2 22 22 H 1.08001 * 120.00490 * 359.97438 * 21 20 3 23 23 C 1.38822 * 119.99428 * 179.97438 * 21 20 3 24 24 N 1.31627 * 119.99467 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47013 * 90.00088 * 25 23 21 27 27 H 1.48500 * 109.46894 * 210.00486 * 25 23 21 28 28 H 1.48496 * 109.47027 * 330.00110 * 25 23 21 29 29 H 1.09001 * 109.47300 * 60.00285 * 1 2 3 30 30 H 1.09001 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46935 * 299.99771 * 1 2 3 32 32 H 1.09003 * 109.46935 * 240.00229 * 2 1 3 33 33 H 1.09001 * 109.47300 * 119.99715 * 2 1 3 34 34 H 1.09000 * 109.47187 * 64.99728 * 5 3 2 35 35 H 1.09001 * 109.47248 * 305.00150 * 5 3 2 36 36 H 0.96999 * 119.99611 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.97427 * 359.97438 * 10 9 7 38 38 H 1.08008 * 119.78063 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.96961 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.22490 * 35.91762 * 16 15 14 41 41 H 1.09004 * 109.21582 * 155.30274 * 16 15 14 42 42 H 1.09003 * 108.94220 * 304.06431 * 17 16 15 43 43 H 1.09004 * 108.86816 * 185.55548 * 17 16 15 44 44 H 1.09002 * 109.21622 * 174.79025 * 18 17 16 45 45 H 1.08999 * 109.21721 * 55.41868 * 18 17 16 46 46 H 0.96998 * 120.00056 * 94.99396 * 20 3 2 47 47 H 0.97000 * 119.99640 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0870 8 8 6.1653 2.1462 -0.2589 9 6 5.8873 4.4454 0.0331 10 6 4.9959 5.5055 0.2316 11 6 5.4703 6.7939 0.3434 12 6 6.8301 7.0512 0.2616 13 6 7.7215 6.0115 0.0659 14 6 7.2582 4.7086 -0.0506 15 8 8.1437 3.6927 -0.2466 16 6 9.0067 3.3954 0.8531 17 6 10.2230 4.3082 0.8446 18 6 9.8537 5.7663 1.0678 19 8 9.0613 6.2593 -0.0149 20 7 1.6524 2.0976 1.2518 21 6 0.4156 2.6734 1.3687 22 1 -0.2741 2.6451 0.5381 23 6 0.0482 3.2936 2.5551 24 7 -1.1405 3.8476 2.6674 25 14 1.2408 3.3421 3.9920 26 1 2.0766 4.5661 3.9006 27 1 0.4794 3.3566 5.2669 28 1 2.1143 2.1419 3.9509 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8498 1.0377 -1.0961 35 1 3.9954 0.8311 0.6658 36 1 3.4409 3.5484 0.1308 37 1 3.9352 5.3135 0.2971 38 1 4.7783 7.6090 0.4962 39 1 7.1938 8.0644 0.3499 40 1 8.4600 3.5336 1.7859 41 1 9.3362 2.3589 0.7805 42 1 10.7285 4.2152 -0.1166 43 1 10.9063 3.9923 1.6329 44 1 10.7649 6.3595 1.1446 45 1 9.2886 5.8553 1.9957 46 1 2.2719 2.1232 1.9978 47 1 -1.3974 4.2807 3.4965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318591169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:38 Heat of formation + Delta-G solvation = -69.931398 kcal Electronic energy + Delta-G solvation = -29553.380969 eV Core-core repulsion = 25509.320693 eV Total energy + Delta-G solvation = -4044.060276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15819 -39.40124 -37.64086 -37.49891 -36.71706 -33.88218 -33.07993 -32.39549 -31.16703 -30.27924 -29.29412 -28.10257 -26.71661 -24.50184 -23.27350 -22.43243 -22.16868 -21.80576 -20.37395 -20.03072 -18.81031 -17.82213 -17.32907 -17.13082 -16.37619 -15.81965 -15.60512 -15.46443 -15.23214 -15.11066 -14.52250 -14.23136 -14.17154 -14.02623 -13.76599 -13.44953 -13.19553 -12.98117 -12.83101 -12.54623 -12.46359 -12.34632 -12.03688 -11.55938 -11.37727 -11.18110 -11.14904 -11.02021 -10.76564 -10.60768 -10.41725 -10.31775 -10.27853 -10.05555 -9.56197 -9.52161 -9.09017 -9.01693 -8.72348 -8.67075 -7.38732 -5.85755 -3.21753 0.61269 0.90707 2.77863 3.20838 3.28649 3.34289 3.37889 3.39408 3.45286 3.80858 4.37787 4.44122 4.50304 4.64530 4.75608 4.83540 4.92443 5.03751 5.06505 5.11139 5.15249 5.17925 5.26786 5.33672 5.42408 5.48808 5.57076 5.72624 5.75422 5.87224 5.89827 5.90941 5.97644 6.09094 6.15137 6.26520 6.31003 6.46096 6.51507 6.57363 6.77901 6.92382 6.93546 7.26995 7.40606 7.80037 7.90489 8.32554 8.45509 9.10598 9.82986 10.02660 11.31868 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.003427 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.788320 B = 8168.288554 C = 9168.769904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.168 3.832 4 H 0.064 0.936 5 C 0.113 3.887 6 N -0.713 5.713 7 C 0.553 3.447 8 O -0.526 6.526 9 C -0.133 4.133 10 C -0.076 4.076 11 C -0.118 4.118 12 C -0.094 4.094 13 C 0.050 3.950 14 C 0.122 3.878 15 O -0.294 6.294 16 C 0.066 3.934 17 C -0.188 4.188 18 C 0.059 3.941 19 O -0.317 6.317 20 N -0.747 5.747 21 C -0.242 4.242 22 H 0.095 0.905 23 C 0.008 3.992 24 N -0.930 5.930 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.278 1.278 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.408 0.592 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.362 0.638 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.369 3.944 -3.465 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.058 3.942 4 H 0.082 0.918 5 C -0.011 4.011 6 N -0.366 5.366 7 C 0.339 3.661 8 O -0.404 6.404 9 C -0.137 4.137 10 C -0.095 4.095 11 C -0.136 4.136 12 C -0.113 4.113 13 C 0.006 3.994 14 C 0.076 3.924 15 O -0.210 6.210 16 C -0.009 4.009 17 C -0.226 4.226 18 C -0.016 4.016 19 O -0.234 6.234 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.113 0.887 23 C -0.188 4.188 24 N -0.578 5.578 25 Si 0.707 3.293 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.204 1.204 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.245 0.755 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.195 0.805 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 19.803 3.327 -3.930 20.461 hybrid contribution 0.435 0.370 1.600 1.699 sum 20.238 3.697 -2.330 20.704 Atomic orbital electron populations 1.21781 0.95194 0.99726 1.03763 1.22035 0.97348 0.97820 1.00137 1.20558 0.89839 0.93030 0.90766 0.91846 1.21733 0.95468 0.82321 1.01580 1.45947 1.06840 1.10925 1.72904 1.17933 0.82644 0.87819 0.77693 1.90786 1.55827 1.45241 1.48526 1.20155 0.92611 0.94650 1.06281 1.21503 1.00083 0.91899 0.95989 1.21066 0.94820 0.97100 1.00593 1.21265 0.92809 0.99089 0.98125 1.19065 0.84510 0.91882 1.03971 1.19141 0.88683 0.87119 0.97447 1.86416 1.47413 1.49945 1.37194 1.22566 0.89674 0.99755 0.88886 1.22524 0.99740 0.95778 1.04573 1.22666 0.95483 0.94725 0.88751 1.86395 1.14266 1.77829 1.44881 1.42853 1.16938 1.67673 1.11627 1.19069 0.90852 1.27357 0.99886 0.88684 1.24646 0.96334 1.00383 0.97407 1.69692 1.19260 1.42065 1.26738 0.86675 0.81055 0.77789 0.83755 1.21094 1.21814 1.20394 0.93847 0.94852 0.89383 0.93502 0.92678 0.91266 0.91811 0.75474 0.84021 0.84185 0.84424 0.92683 0.87688 0.89766 0.89223 0.87841 0.92407 0.80545 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.18 37.16 0.34 -2.27 16 2 C -0.13 -2.18 5.61 -26.73 -0.15 -2.33 16 3 C 0.17 2.92 2.59 -67.93 -0.18 2.75 16 4 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 5 C 0.11 1.82 5.23 -4.04 -0.02 1.80 16 6 N -0.71 -11.44 5.34 -61.35 -0.33 -11.77 16 7 C 0.55 9.41 7.77 -12.47 -0.10 9.31 16 8 O -0.53 -10.28 15.18 -16.47 -0.25 -10.53 16 9 C -0.13 -2.01 5.88 -104.87 -0.62 -2.63 16 10 C -0.08 -0.97 9.54 -39.13 -0.37 -1.34 16 11 C -0.12 -1.26 10.02 -39.61 -0.40 -1.66 16 12 C -0.09 -1.02 9.99 -39.40 -0.39 -1.41 16 13 C 0.05 0.64 5.73 -39.34 -0.23 0.42 16 14 C 0.12 1.82 5.73 -38.78 -0.22 1.60 16 15 O -0.29 -4.59 8.26 -49.13 -0.41 -5.00 16 16 C 0.07 0.76 6.51 36.69 0.24 1.00 16 17 C -0.19 -1.61 5.92 -27.68 -0.16 -1.78 16 18 C 0.06 0.51 6.51 36.68 0.24 0.75 16 19 O -0.32 -3.86 10.16 -36.81 -0.37 -4.24 16 20 N -0.75 -15.69 4.31 -53.42 -0.23 -15.92 16 21 C -0.24 -6.07 8.23 -15.06 -0.12 -6.20 16 22 H 0.10 2.57 7.55 -52.49 -0.40 2.18 16 23 C 0.01 0.23 5.50 -17.42 -0.10 0.13 16 24 N -0.93 -27.39 13.97 55.49 0.78 -26.61 16 25 Si 0.88 20.83 27.73 -169.99 -4.71 16.12 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.87 5.99 -51.93 -0.31 1.56 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.41 6.36 6.18 -40.82 -0.25 6.11 16 37 H 0.14 1.71 6.42 -52.49 -0.34 1.37 16 38 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.05 0.63 7.93 -51.93 -0.41 0.21 16 41 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 46 H 0.36 7.76 5.66 -40.82 -0.23 7.53 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -32.05 377.25 -9.09 -41.14 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.01 Total: 12.98 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.24 Total: -1.86 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.22 Total: -54.30 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.03 Total: -19.77 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.05 -9.09 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318591169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.788 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds