Wall clock time and date at job start Tue Mar 31 2020 18:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.09002 * 109.46824 * 304.99766 * 3 2 1 5 5 C 1.52995 * 109.47160 * 185.00256 * 3 2 1 6 6 N 1.46503 * 109.47289 * 184.99956 * 5 3 2 7 7 C 1.34775 * 119.99975 * 180.02562 * 6 5 3 8 8 O 1.21587 * 120.00059 * 359.97438 * 7 6 5 9 9 C 1.47540 * 119.99785 * 179.97438 * 7 6 5 10 10 C 1.39915 * 120.31607 * 0.02562 * 9 7 6 11 11 C 1.37754 * 120.05227 * 179.97438 * 10 9 7 12 12 C 1.38631 * 120.43550 * 359.95623 * 11 10 9 13 13 C 1.38347 * 120.05865 * 0.02562 * 12 11 10 14 14 C 1.38773 * 120.15436 * 0.06781 * 13 12 11 15 15 O 1.36181 * 119.69582 * 179.82544 * 14 13 12 16 16 C 1.42920 * 115.91543 * 68.41846 * 15 14 13 17 17 C 1.52074 * 110.71971 * 275.56618 * 16 15 14 18 18 C 1.52059 * 112.36667 * 64.83633 * 17 16 15 19 19 O 1.36494 * 120.29482 * 180.02562 * 13 12 11 20 20 N 1.46500 * 109.47470 * 64.99840 * 3 2 1 21 21 C 1.36933 * 119.99878 * 275.00828 * 20 3 2 22 22 H 1.08001 * 120.00490 * 359.97438 * 21 20 3 23 23 C 1.38822 * 119.99428 * 179.97438 * 21 20 3 24 24 N 1.31627 * 119.99467 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00230 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47013 * 90.00088 * 25 23 21 27 27 H 1.48500 * 109.46894 * 210.00486 * 25 23 21 28 28 H 1.48496 * 109.47027 * 330.00110 * 25 23 21 29 29 H 1.09001 * 109.47300 * 60.00285 * 1 2 3 30 30 H 1.09001 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46935 * 299.99771 * 1 2 3 32 32 H 1.09003 * 109.46935 * 240.00229 * 2 1 3 33 33 H 1.09001 * 109.47300 * 119.99715 * 2 1 3 34 34 H 1.09000 * 109.47187 * 64.99728 * 5 3 2 35 35 H 1.09001 * 109.47248 * 305.00150 * 5 3 2 36 36 H 0.96999 * 119.99611 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.97427 * 359.97438 * 10 9 7 38 38 H 1.08008 * 119.78063 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.96961 * 179.97438 * 12 11 10 40 40 H 1.09002 * 109.22490 * 35.91762 * 16 15 14 41 41 H 1.09004 * 109.21582 * 155.30274 * 16 15 14 42 42 H 1.09003 * 108.94220 * 304.06431 * 17 16 15 43 43 H 1.09004 * 108.86816 * 185.55548 * 17 16 15 44 44 H 1.09002 * 109.21622 * 174.79025 * 18 17 16 45 45 H 1.08999 * 109.21721 * 55.41868 * 18 17 16 46 46 H 0.96998 * 120.00056 * 94.99396 * 20 3 2 47 47 H 0.97000 * 119.99640 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1258 6 7 4.0630 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0870 8 8 6.1653 2.1462 -0.2589 9 6 5.8873 4.4454 0.0331 10 6 4.9959 5.5055 0.2316 11 6 5.4703 6.7939 0.3434 12 6 6.8301 7.0512 0.2616 13 6 7.7215 6.0115 0.0659 14 6 7.2582 4.7086 -0.0506 15 8 8.1437 3.6927 -0.2466 16 6 9.0067 3.3954 0.8531 17 6 10.2230 4.3082 0.8446 18 6 9.8537 5.7663 1.0678 19 8 9.0613 6.2593 -0.0149 20 7 1.6524 2.0976 1.2518 21 6 0.4156 2.6734 1.3687 22 1 -0.2741 2.6451 0.5381 23 6 0.0482 3.2936 2.5551 24 7 -1.1405 3.8476 2.6674 25 14 1.2408 3.3421 3.9920 26 1 2.0766 4.5661 3.9006 27 1 0.4794 3.3566 5.2669 28 1 2.1143 2.1419 3.9509 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8498 1.0377 -1.0961 35 1 3.9954 0.8311 0.6658 36 1 3.4409 3.5484 0.1308 37 1 3.9352 5.3135 0.2971 38 1 4.7783 7.6090 0.4962 39 1 7.1938 8.0644 0.3499 40 1 8.4600 3.5336 1.7859 41 1 9.3362 2.3589 0.7805 42 1 10.7285 4.2152 -0.1166 43 1 10.9063 3.9923 1.6329 44 1 10.7649 6.3595 1.1446 45 1 9.2886 5.8553 1.9957 46 1 2.2719 2.1232 1.9978 47 1 -1.3974 4.2807 3.4965 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318591169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:38 Heat of formation + Delta-G solvation = -90.249004 kcal Electronic energy + Delta-G solvation = -29554.262006 eV Core-core repulsion = 25509.320693 eV Total energy + Delta-G solvation = -4044.941314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11734 -40.61193 -38.62348 -38.59070 -38.07558 -35.32799 -34.22358 -33.84537 -32.21533 -32.04021 -30.22943 -29.50993 -27.55368 -25.81139 -24.83266 -23.79210 -23.04489 -22.72629 -21.78658 -21.32968 -19.95389 -19.41951 -18.40810 -18.17555 -17.44543 -17.13502 -16.83197 -16.48761 -16.32352 -16.04680 -15.99983 -15.70207 -15.22858 -15.09159 -14.84982 -14.67921 -14.62689 -14.43862 -14.19152 -14.05736 -13.42598 -13.21005 -13.05687 -13.02080 -12.85176 -12.81731 -12.38608 -12.21167 -12.09438 -11.94125 -11.87922 -11.62487 -11.42283 -11.40059 -11.30901 -10.94281 -10.71136 -10.20673 -9.89445 -9.62140 -9.28962 -7.94082 -5.26328 -0.38679 -0.01431 1.39743 1.42553 1.48212 1.72342 2.09923 2.38384 2.46856 2.52484 2.80938 3.36763 3.53417 3.62397 3.67170 3.75455 3.82354 3.90612 4.03305 4.14915 4.20831 4.27247 4.30682 4.32471 4.35193 4.44388 4.50627 4.54746 4.72078 4.75756 4.79531 4.81854 5.00657 5.04105 5.06493 5.10017 5.11620 5.19309 5.24512 5.41413 5.47227 5.53004 5.72727 5.88619 6.07972 6.28361 6.47070 6.51959 7.13675 7.16952 7.88291 8.07413 9.26912 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014026 B = 0.003427 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.788320 B = 8168.288554 C = 9168.769904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.169 3.831 4 H 0.062 0.938 5 C 0.121 3.879 6 N -0.711 5.711 7 C 0.552 3.448 8 O -0.559 6.559 9 C -0.159 4.159 10 C -0.081 4.081 11 C -0.110 4.110 12 C -0.083 4.083 13 C 0.043 3.957 14 C 0.103 3.897 15 O -0.325 6.325 16 C 0.057 3.943 17 C -0.181 4.181 18 C 0.051 3.949 19 O -0.331 6.331 20 N -0.746 5.746 21 C -0.206 4.206 22 H 0.070 0.930 23 C -0.055 4.055 24 N -0.981 5.981 25 Si 0.936 3.064 26 H -0.274 1.274 27 H -0.306 1.306 28 H -0.265 1.265 29 H 0.043 0.957 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.410 0.590 37 H 0.144 0.856 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.050 0.950 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.122 0.878 44 H 0.134 0.866 45 H 0.063 0.937 46 H 0.362 0.638 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.573 4.697 -3.363 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.061 3.939 4 H 0.080 0.920 5 C -0.003 4.003 6 N -0.363 5.363 7 C 0.339 3.661 8 O -0.439 6.439 9 C -0.162 4.162 10 C -0.100 4.100 11 C -0.128 4.128 12 C -0.101 4.101 13 C -0.001 4.001 14 C 0.057 3.943 15 O -0.241 6.241 16 C -0.017 4.017 17 C -0.218 4.218 18 C -0.023 4.023 19 O -0.248 6.248 20 N -0.390 5.390 21 C -0.337 4.337 22 H 0.088 0.912 23 C -0.247 4.247 24 N -0.632 5.632 25 Si 0.765 3.235 26 H -0.200 1.200 27 H -0.233 1.233 28 H -0.190 1.190 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.162 0.838 38 H 0.189 0.811 39 H 0.186 0.814 40 H 0.069 0.931 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.081 0.919 46 H 0.195 0.805 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 22.048 4.055 -3.855 22.747 hybrid contribution -0.213 0.092 1.461 1.480 sum 21.835 4.147 -2.394 22.353 Atomic orbital electron populations 1.21691 0.96199 1.00472 1.01676 1.21966 0.96252 0.96964 1.01674 1.20687 0.90886 0.93444 0.88891 0.92026 1.21638 0.93960 0.82514 1.02166 1.45930 1.06775 1.10938 1.72684 1.18273 0.82432 0.88527 0.76819 1.90754 1.56506 1.46418 1.50218 1.20114 0.93314 0.94052 1.08758 1.21619 0.99904 0.92376 0.96093 1.21417 0.95429 0.96928 0.98989 1.21624 0.92442 0.99907 0.96117 1.19247 0.85372 0.91558 1.03926 1.19404 0.88627 0.87910 0.98357 1.86345 1.48206 1.50714 1.38878 1.22791 0.90324 1.00834 0.87792 1.22480 0.98609 0.95317 1.05399 1.22967 0.96207 0.95094 0.88018 1.86364 1.14043 1.77993 1.46432 1.42831 1.15453 1.67698 1.13007 1.18969 0.91354 1.24900 0.98441 0.91194 1.25240 0.97803 1.01521 1.00102 1.69850 1.21576 1.44593 1.27211 0.85703 0.79146 0.78553 0.80079 1.20025 1.23347 1.19005 0.93820 0.92779 0.93437 0.90327 0.92728 0.89974 0.92148 0.75235 0.83791 0.81138 0.81379 0.93125 0.87504 0.90437 0.86030 0.84849 0.91879 0.80481 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 9.18 71.98 0.66 -4.26 16 2 C -0.13 -3.96 5.61 30.60 0.17 -3.79 16 3 C 0.17 5.67 2.59 44.99 0.12 5.79 16 4 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 5 C 0.12 3.74 5.23 86.38 0.45 4.19 16 6 N -0.71 -22.36 5.34 -466.27 -2.49 -24.85 16 7 C 0.55 18.80 7.77 86.70 0.67 19.47 16 8 O -0.56 -22.12 15.18 16.82 0.26 -21.87 16 9 C -0.16 -4.75 5.88 -20.03 -0.12 -4.87 16 10 C -0.08 -1.97 9.54 22.56 0.22 -1.75 16 11 C -0.11 -2.06 10.02 22.25 0.22 -1.84 16 12 C -0.08 -1.55 9.99 22.39 0.22 -1.33 16 13 C 0.04 1.05 5.73 22.42 0.13 1.18 16 14 C 0.10 3.05 5.73 22.79 0.13 3.18 16 15 O -0.33 -10.29 8.26 -68.07 -0.56 -10.85 16 16 C 0.06 1.30 6.51 71.68 0.47 1.76 16 17 C -0.18 -2.79 5.92 29.98 0.18 -2.61 16 18 C 0.05 0.78 6.51 71.67 0.47 1.24 16 19 O -0.33 -7.46 10.16 -84.44 -0.86 -8.32 16 20 N -0.75 -30.75 4.31 -322.94 -1.39 -32.14 16 21 C -0.21 -10.39 8.23 84.04 0.69 -9.70 16 22 H 0.07 3.87 7.55 -2.91 -0.02 3.85 16 23 C -0.06 -3.01 5.50 84.86 0.47 -2.54 16 24 N -0.98 -59.26 13.97 21.66 0.30 -58.96 16 25 Si 0.94 43.13 27.73 68.60 1.90 45.04 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 H -0.31 -14.77 7.11 99.48 0.71 -14.07 16 28 H -0.26 -11.44 6.52 99.48 0.65 -10.80 16 29 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.41 12.52 6.18 -92.71 -0.57 11.94 16 37 H 0.14 3.32 6.42 -2.91 -0.02 3.31 16 38 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.05 1.15 7.93 -2.39 -0.02 1.13 16 41 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.06 0.89 7.93 -2.39 -0.02 0.87 16 46 H 0.36 15.04 5.66 -92.71 -0.52 14.52 16 47 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -71.46 377.25 2.15 -69.31 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.16 Total: 38.52 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.15 Total: 4.13 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -3.58 Total: -115.95 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.17 Total: -41.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.04 kcal Total: -71.46 2.15 -69.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318591169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.940 kcal (2) G-P(sol) polarization free energy of solvation -71.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds