Wall clock time and date at job start Tue Mar 31 2020 18:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21580 * 120.00384 * 359.97438 * 7 6 5 9 9 C 1.47550 * 119.99527 * 179.97438 * 7 6 5 10 10 C 1.39909 * 120.31758 * 359.97438 * 9 7 6 11 11 C 1.37753 * 120.04179 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.44585 * 359.97438 * 11 10 9 13 13 C 1.38361 * 120.05871 * 0.02562 * 12 11 10 14 14 C 1.38777 * 120.13572 * 359.74221 * 13 12 11 15 15 O 1.36176 * 119.70081 * 180.17749 * 14 13 12 16 16 C 1.42918 * 115.91529 * 68.68386 * 15 14 13 17 17 C 1.52072 * 110.73883 * 275.57190 * 16 15 14 18 18 C 1.52053 * 112.37613 * 64.77414 * 17 16 15 19 19 O 1.36491 * 120.30997 * 180.02562 * 13 12 11 20 20 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 3 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 3 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 31 31 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 33 33 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 34 34 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 35 35 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 36 36 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.97937 * 359.97085 * 10 9 7 38 38 H 1.07997 * 119.77687 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.97460 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.22408 * 35.89621 * 16 15 14 41 41 H 1.09001 * 109.21988 * 155.28945 * 16 15 14 42 42 H 1.09000 * 108.89801 * 185.52565 * 17 16 15 43 43 H 1.08998 * 108.89690 * 304.12213 * 17 16 15 44 44 H 1.09005 * 109.21544 * 55.51658 * 18 17 16 45 45 H 1.09006 * 109.21341 * 174.88369 * 18 17 16 46 46 H 0.97000 * 119.99792 * 264.99726 * 20 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1655 2.1460 0.2576 9 6 5.8875 4.4452 -0.0353 10 6 4.9962 5.5052 -0.2336 11 6 5.4708 6.7936 -0.3454 12 6 6.8306 7.0510 -0.2623 13 6 7.7221 6.0112 -0.0663 14 6 7.2581 4.7088 0.0529 15 8 8.1431 3.6926 0.2492 16 6 8.8039 3.6759 1.5163 17 6 10.0227 4.5852 1.5000 18 6 9.6513 6.0476 1.3121 19 8 9.0617 6.2589 0.0169 20 7 1.6524 2.0975 -1.2518 21 6 0.4157 2.6734 -1.3688 22 1 -0.2740 2.6452 -0.5381 23 6 0.0506 3.2991 -2.5530 24 7 0.8912 3.3339 -3.5651 25 14 -1.6337 4.0915 -2.7099 26 1 -2.3839 3.9152 -1.4404 27 1 -1.4746 5.5403 -2.9943 28 1 -2.3819 3.4484 -3.8198 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 3.8500 1.0377 1.0960 35 1 3.9955 0.8311 -0.6660 36 1 3.4411 3.5483 -0.1315 37 1 3.9354 5.3133 -0.2992 38 1 4.7790 7.6087 -0.4980 39 1 7.1943 8.0641 -0.3505 40 1 8.1120 4.0168 2.2865 41 1 9.1197 2.6575 1.7430 42 1 10.5580 4.4751 2.4432 43 1 10.6790 4.2813 0.6845 44 1 8.9417 6.3399 2.0862 45 1 10.5491 6.6598 1.3991 46 1 2.2720 2.1232 -1.9978 47 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318591170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:41 Heat of formation + Delta-G solvation = -73.608776 kcal Electronic energy + Delta-G solvation = -29396.966719 eV Core-core repulsion = 25352.746980 eV Total energy + Delta-G solvation = -4044.219739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04673 -39.25267 -37.55511 -37.34417 -36.53734 -33.75535 -33.02214 -32.39420 -31.06211 -29.72652 -29.19129 -27.85899 -26.64186 -24.43421 -23.43808 -22.47025 -22.09493 -21.72574 -20.23684 -19.86877 -18.66344 -17.51585 -17.20672 -17.01059 -16.27455 -15.70177 -15.50253 -15.34162 -15.11695 -14.95827 -14.50771 -14.13677 -14.02976 -13.86828 -13.75049 -13.38479 -13.21771 -12.99751 -12.68180 -12.42645 -12.28827 -12.15631 -11.91631 -11.43209 -11.31949 -11.09181 -10.98293 -10.91373 -10.74310 -10.56146 -10.43478 -10.20861 -10.19045 -10.00708 -9.55905 -9.42951 -8.98850 -8.97220 -8.60472 -8.53910 -7.05118 -5.82841 -3.12428 0.71864 0.99951 2.88342 3.31111 3.37543 3.44189 3.46447 3.50088 3.54372 3.91546 4.41827 4.49579 4.52486 4.74201 4.84812 4.88269 5.00884 5.09896 5.11308 5.19723 5.24098 5.37386 5.42011 5.43740 5.55030 5.56213 5.63408 5.77763 5.91835 5.95505 5.97401 6.00675 6.07956 6.19891 6.24902 6.40121 6.42344 6.54516 6.57543 6.60671 6.91059 6.98458 7.02640 7.23561 7.48608 7.65262 7.95796 8.34083 8.60096 9.46155 10.01353 10.37447 11.38805 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.003147 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.016687 B = 8894.774124 C =10378.072793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.116 3.884 6 N -0.708 5.708 7 C 0.553 3.447 8 O -0.530 6.530 9 C -0.130 4.130 10 C -0.073 4.073 11 C -0.118 4.118 12 C -0.096 4.096 13 C 0.049 3.951 14 C 0.121 3.879 15 O -0.293 6.293 16 C 0.067 3.933 17 C -0.188 4.188 18 C 0.058 3.942 19 O -0.318 6.318 20 N -0.722 5.722 21 C -0.238 4.238 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.927 5.927 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.408 0.592 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.054 0.946 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.181 5.988 12.674 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.008 4.008 6 N -0.361 5.361 7 C 0.339 3.661 8 O -0.407 6.407 9 C -0.134 4.134 10 C -0.091 4.091 11 C -0.136 4.136 12 C -0.115 4.115 13 C 0.005 3.995 14 C 0.075 3.925 15 O -0.209 6.209 16 C -0.008 4.008 17 C -0.226 4.226 18 C -0.017 4.017 19 O -0.234 6.234 20 N -0.365 5.365 21 C -0.369 4.369 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.575 5.575 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.246 0.754 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.220 0.780 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.732 5.288 12.562 20.070 hybrid contribution -1.117 0.812 -0.326 1.419 sum 13.615 6.100 12.236 19.295 Atomic orbital electron populations 1.21768 0.95728 0.99627 1.03232 1.22066 0.96948 0.98390 1.00055 1.20569 0.89905 0.92840 0.91414 0.92863 1.21678 0.95575 0.82426 1.01138 1.45899 1.06752 1.10901 1.72510 1.17916 0.82667 0.87759 0.77751 1.90775 1.55833 1.45219 1.48909 1.20164 0.91989 0.94750 1.06506 1.21496 1.00151 0.91772 0.95722 1.21045 0.94780 0.97140 1.00675 1.21255 0.92426 0.98630 0.99142 1.19052 0.84315 0.91567 1.04603 1.19142 0.88268 0.86922 0.98136 1.86433 1.54455 1.45665 1.34308 1.22545 0.92738 1.01164 0.84372 1.22507 1.00120 0.95872 1.04069 1.22811 0.98607 0.96273 0.84003 1.86631 1.18004 1.87619 1.31165 1.42483 1.16787 1.65866 1.11317 1.19242 0.91988 1.27550 0.98099 0.90859 1.24737 0.97989 1.01565 0.96423 1.69675 1.35089 1.48719 1.04039 0.86211 0.84160 0.78915 0.77451 1.20570 1.21928 1.21962 0.94145 0.89656 0.94886 0.92488 0.93855 0.91837 0.91712 0.75417 0.83988 0.84326 0.84544 0.92774 0.87757 0.89268 0.89762 0.92323 0.87964 0.78037 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.29 5.61 -26.73 -0.15 -2.44 16 3 C 0.16 2.98 2.59 -67.93 -0.18 2.80 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.12 1.99 5.23 -4.04 -0.02 1.97 16 6 N -0.71 -12.11 5.34 -61.34 -0.33 -12.44 16 7 C 0.55 9.95 7.77 -12.46 -0.10 9.85 16 8 O -0.53 -10.87 15.18 -16.48 -0.25 -11.12 16 9 C -0.13 -2.07 5.88 -104.87 -0.62 -2.69 16 10 C -0.07 -0.98 9.54 -39.13 -0.37 -1.35 16 11 C -0.12 -1.34 10.02 -39.61 -0.40 -1.74 16 12 C -0.10 -1.09 9.99 -39.39 -0.39 -1.48 16 13 C 0.05 0.66 5.72 -39.34 -0.22 0.44 16 14 C 0.12 1.90 5.73 -38.78 -0.22 1.68 16 15 O -0.29 -4.78 8.25 -49.12 -0.41 -5.18 16 16 C 0.07 0.78 6.51 36.68 0.24 1.01 16 17 C -0.19 -1.64 5.92 -27.69 -0.16 -1.80 16 18 C 0.06 0.51 6.53 36.68 0.24 0.75 16 19 O -0.32 -4.05 10.23 -36.80 -0.38 -4.43 16 20 N -0.72 -16.23 4.51 -53.42 -0.24 -16.47 16 21 C -0.24 -5.91 7.75 -15.06 -0.12 -6.03 16 22 H 0.07 1.79 7.32 -52.49 -0.38 1.40 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 25 Si 0.90 21.14 29.55 -169.99 -5.02 16.12 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.78 5.99 -51.93 -0.31 1.46 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.41 6.87 6.18 -40.82 -0.25 6.62 16 37 H 0.14 1.85 6.42 -52.49 -0.34 1.51 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.05 0.59 7.93 -51.93 -0.41 0.18 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.47 7.94 -51.93 -0.41 0.06 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.39 9.59 7.80 -40.82 -0.32 9.27 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -31.47 380.43 -9.45 -40.92 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -7.06 Total: 14.18 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.23 Total: -1.64 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.16 Total: -54.58 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.03 Total: -20.73 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.47 -9.45 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318591170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.692 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds