Wall clock time and date at job start Tue Mar 31 2020 18:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21580 * 120.00384 * 359.97438 * 7 6 5 9 9 C 1.47550 * 119.99527 * 179.97438 * 7 6 5 10 10 C 1.39909 * 120.31758 * 359.97438 * 9 7 6 11 11 C 1.37753 * 120.04179 * 179.97438 * 10 9 7 12 12 C 1.38638 * 120.44585 * 359.97438 * 11 10 9 13 13 C 1.38361 * 120.05871 * 0.02562 * 12 11 10 14 14 C 1.38777 * 120.13572 * 359.74221 * 13 12 11 15 15 O 1.36176 * 119.70081 * 180.17749 * 14 13 12 16 16 C 1.42918 * 115.91529 * 68.68386 * 15 14 13 17 17 C 1.52072 * 110.73883 * 275.57190 * 16 15 14 18 18 C 1.52053 * 112.37613 * 64.77414 * 17 16 15 19 19 O 1.36491 * 120.30997 * 180.02562 * 13 12 11 20 20 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 21 21 C 1.36931 * 119.99788 * 84.99932 * 20 3 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 3 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 30 30 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 31 31 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 33 33 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 34 34 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 35 35 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 36 36 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.97937 * 359.97085 * 10 9 7 38 38 H 1.07997 * 119.77687 * 180.02562 * 11 10 9 39 39 H 1.07996 * 119.97460 * 180.02562 * 12 11 10 40 40 H 1.09002 * 109.22408 * 35.89621 * 16 15 14 41 41 H 1.09001 * 109.21988 * 155.28945 * 16 15 14 42 42 H 1.09000 * 108.89801 * 185.52565 * 17 16 15 43 43 H 1.08998 * 108.89690 * 304.12213 * 17 16 15 44 44 H 1.09005 * 109.21544 * 55.51658 * 18 17 16 45 45 H 1.09006 * 109.21341 * 174.88369 * 18 17 16 46 46 H 0.97000 * 119.99792 * 264.99726 * 20 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1655 2.1460 0.2576 9 6 5.8875 4.4452 -0.0353 10 6 4.9962 5.5052 -0.2336 11 6 5.4708 6.7936 -0.3454 12 6 6.8306 7.0510 -0.2623 13 6 7.7221 6.0112 -0.0663 14 6 7.2581 4.7088 0.0529 15 8 8.1431 3.6926 0.2492 16 6 8.8039 3.6759 1.5163 17 6 10.0227 4.5852 1.5000 18 6 9.6513 6.0476 1.3121 19 8 9.0617 6.2589 0.0169 20 7 1.6524 2.0975 -1.2518 21 6 0.4157 2.6734 -1.3688 22 1 -0.2740 2.6452 -0.5381 23 6 0.0506 3.2991 -2.5530 24 7 0.8912 3.3339 -3.5651 25 14 -1.6337 4.0915 -2.7099 26 1 -2.3839 3.9152 -1.4404 27 1 -1.4746 5.5403 -2.9943 28 1 -2.3819 3.4484 -3.8198 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8935 -0.5138 0.8899 34 1 3.8500 1.0377 1.0960 35 1 3.9955 0.8311 -0.6660 36 1 3.4411 3.5483 -0.1315 37 1 3.9354 5.3133 -0.2992 38 1 4.7790 7.6087 -0.4980 39 1 7.1943 8.0641 -0.3505 40 1 8.1120 4.0168 2.2865 41 1 9.1197 2.6575 1.7430 42 1 10.5580 4.4751 2.4432 43 1 10.6790 4.2813 0.6845 44 1 8.9417 6.3399 2.0862 45 1 10.5491 6.6598 1.3991 46 1 2.2720 2.1232 -1.9978 47 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318591170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:40 Heat of formation + Delta-G solvation = -93.132900 kcal Electronic energy + Delta-G solvation = -29397.813349 eV Core-core repulsion = 25352.746980 eV Total energy + Delta-G solvation = -4045.066369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06592 -40.54315 -38.56249 -38.49153 -37.97100 -35.27044 -34.19429 -33.82123 -32.15935 -31.44660 -30.18815 -29.34890 -27.51088 -25.89195 -25.00775 -23.79341 -23.02052 -22.67697 -21.66684 -21.21437 -19.75683 -19.15898 -18.37504 -18.14093 -17.40621 -16.98076 -16.84982 -16.40431 -16.25003 -16.04919 -15.94414 -15.58440 -15.27712 -15.04247 -14.87344 -14.73768 -14.52633 -14.22266 -14.10390 -13.77774 -13.39345 -13.14524 -13.00002 -12.91278 -12.78188 -12.74970 -12.34572 -12.18492 -12.05459 -11.91720 -11.85048 -11.61822 -11.38886 -11.32917 -11.27186 -10.91040 -10.67294 -10.16189 -9.84796 -9.58573 -8.96211 -7.84832 -5.12635 -0.34878 0.01917 1.51120 1.53913 1.61459 1.75513 2.16253 2.43123 2.49445 2.61919 2.82876 3.48511 3.61576 3.69724 3.78281 3.86555 3.91297 3.96890 4.07164 4.17799 4.24014 4.31046 4.34908 4.36916 4.38559 4.48771 4.53369 4.57158 4.74600 4.77959 4.82059 4.88129 5.04334 5.06432 5.10082 5.12613 5.14595 5.21928 5.27619 5.45725 5.50595 5.58282 5.64088 5.73639 6.09422 6.34552 6.49798 6.57421 7.21521 7.42524 8.13480 8.39070 9.38093 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015123 B = 0.003147 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.016687 B = 8894.774124 C =10378.072793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.062 0.938 5 C 0.123 3.877 6 N -0.705 5.705 7 C 0.550 3.450 8 O -0.564 6.564 9 C -0.158 4.158 10 C -0.078 4.078 11 C -0.110 4.110 12 C -0.083 4.083 13 C 0.043 3.957 14 C 0.102 3.898 15 O -0.328 6.328 16 C 0.057 3.943 17 C -0.180 4.180 18 C 0.050 3.950 19 O -0.334 6.334 20 N -0.729 5.729 21 C -0.215 4.215 22 H 0.082 0.918 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.959 3.041 26 H -0.265 1.265 27 H -0.297 1.297 28 H -0.305 1.305 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.410 0.590 37 H 0.142 0.858 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.124 0.876 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.371 0.629 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.363 7.476 14.717 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.080 0.920 5 C -0.001 4.001 6 N -0.357 5.357 7 C 0.338 3.662 8 O -0.444 6.444 9 C -0.162 4.162 10 C -0.097 4.097 11 C -0.127 4.127 12 C -0.102 4.102 13 C -0.001 4.001 14 C 0.056 3.944 15 O -0.244 6.244 16 C -0.017 4.017 17 C -0.218 4.218 18 C -0.024 4.024 19 O -0.251 6.251 20 N -0.369 5.369 21 C -0.346 4.346 22 H 0.100 0.900 23 C -0.264 4.264 24 N -0.619 5.619 25 Si 0.790 3.210 26 H -0.190 1.190 27 H -0.224 1.224 28 H -0.233 1.233 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.247 0.753 37 H 0.160 0.840 38 H 0.189 0.811 39 H 0.187 0.813 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.142 0.858 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.203 0.797 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.898 6.765 14.670 21.975 hybrid contribution -1.088 0.298 -0.849 1.412 sum 13.810 7.062 13.821 20.775 Atomic orbital electron populations 1.21694 0.95790 1.00610 1.01881 1.21991 0.96766 0.97308 1.00993 1.20709 0.90542 0.93385 0.89629 0.92021 1.21595 0.94612 0.82487 1.01399 1.45875 1.06708 1.10844 1.72271 1.18317 0.82445 0.88605 0.76843 1.90738 1.56510 1.46477 1.50668 1.20114 0.92832 0.94006 1.09199 1.21583 0.99808 0.92325 0.95971 1.21399 0.95474 0.96880 0.98972 1.21626 0.92023 0.99537 0.96990 1.19225 0.85173 0.91186 1.04508 1.19410 0.88162 0.87772 0.99034 1.86355 1.55030 1.46703 1.36335 1.22798 0.93731 1.02269 0.82939 1.22468 0.98546 0.95253 1.05493 1.23136 0.99800 0.96712 0.82704 1.86595 1.17566 1.87540 1.33423 1.42610 1.15873 1.66131 1.12296 1.19533 0.92408 1.25083 0.97615 0.90042 1.25370 1.00884 1.03477 0.96662 1.69826 1.36794 1.50836 1.04412 0.85283 0.80902 0.77516 0.77335 1.18964 1.22410 1.23319 0.93054 0.93211 0.92893 0.93770 0.90667 0.90114 0.93388 0.75259 0.84044 0.81132 0.81328 0.92656 0.87615 0.85763 0.90798 0.91326 0.84939 0.79667 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 9.18 71.98 0.66 -4.09 16 2 C -0.13 -4.25 5.61 30.59 0.17 -4.08 16 3 C 0.17 5.92 2.59 44.99 0.12 6.03 16 4 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 5 C 0.12 4.23 5.23 86.38 0.45 4.68 16 6 N -0.71 -24.56 5.34 -466.25 -2.49 -27.05 16 7 C 0.55 20.49 7.77 86.70 0.67 21.16 16 8 O -0.56 -24.11 15.18 16.85 0.26 -23.85 16 9 C -0.16 -5.13 5.88 -20.03 -0.12 -5.25 16 10 C -0.08 -2.08 9.54 22.56 0.22 -1.86 16 11 C -0.11 -2.24 10.02 22.25 0.22 -2.02 16 12 C -0.08 -1.69 9.99 22.39 0.22 -1.47 16 13 C 0.04 1.13 5.72 22.43 0.13 1.26 16 14 C 0.10 3.24 5.73 22.79 0.13 3.37 16 15 O -0.33 -11.06 8.25 -68.01 -0.56 -11.63 16 16 C 0.06 1.33 6.51 71.68 0.47 1.80 16 17 C -0.18 -2.88 5.92 29.98 0.18 -2.70 16 18 C 0.05 0.78 6.53 71.67 0.47 1.25 16 19 O -0.33 -8.02 10.23 -84.41 -0.86 -8.88 16 20 N -0.73 -32.88 4.51 -322.93 -1.46 -34.33 16 21 C -0.21 -10.59 7.75 84.04 0.65 -9.94 16 22 H 0.08 3.85 7.32 -2.91 -0.02 3.83 16 23 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 24 N -0.97 -56.35 13.06 21.65 0.28 -56.07 16 25 Si 0.96 43.72 29.55 68.60 2.03 45.75 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 28 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 2.02 5.99 -2.39 -0.01 2.00 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.41 14.00 6.18 -92.71 -0.57 13.42 16 37 H 0.14 3.68 6.42 -2.91 -0.02 3.66 16 38 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 39 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 40 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 41 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 0.93 7.94 -2.38 -0.02 0.92 16 45 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.37 18.94 7.80 -92.71 -0.72 18.22 16 47 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -70.24 380.43 2.01 -68.24 By element: Atomic # 1 Polarization: 43.34 SS G_CDS: -0.30 Total: 43.04 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.11 Total: 4.78 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -3.66 Total: -117.45 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.17 Total: -44.36 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.24 2.01 -68.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318591170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.894 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds