Wall clock time and date at job start Tue Mar 31 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 N 1.46498 * 109.47567 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.99941 * 270.00141 * 4 3 2 6 6 C 1.52994 * 109.46935 * 264.11820 * 5 4 3 7 7 C 1.34773 * 120.00046 * 89.99471 * 4 3 2 8 8 O 1.21354 * 120.00196 * 354.65788 * 7 4 3 9 9 C 1.49452 * 119.99924 * 174.65079 * 7 4 3 10 10 O 1.21351 * 120.00299 * 0.77331 * 9 7 4 11 11 N 1.34780 * 120.00021 * 180.76882 * 9 7 4 12 12 C 1.46499 * 120.00285 * 180.02562 * 11 9 7 13 13 C 1.50694 * 109.47368 * 180.02562 * 12 11 9 14 14 C 1.38329 * 119.96627 * 269.98233 * 13 12 11 15 15 C 1.38274 * 120.13753 * 180.02562 * 14 13 12 16 16 C 1.38125 * 120.07165 * 359.67655 * 15 14 13 17 17 C 1.38863 * 119.92484 * 0.59707 * 16 15 14 18 18 O 1.35759 * 120.06585 * 179.69752 * 17 16 15 19 19 C 1.34831 * 116.99840 * 354.20208 * 18 17 16 20 20 H 1.08000 * 120.00316 * 5.04514 * 19 18 17 21 21 C 1.38654 * 119.99659 * 185.04437 * 19 18 17 22 22 N 1.31562 * 120.00136 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47204 * 60.00058 * 23 21 19 25 25 H 1.48500 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47141 * 299.99547 * 23 21 19 27 27 C 1.38087 * 119.96509 * 89.99747 * 13 12 11 28 28 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47433 * 300.00143 * 1 2 3 30 30 H 1.09002 * 109.46907 * 60.00054 * 1 2 3 31 31 H 1.09003 * 109.47433 * 239.99857 * 2 1 3 32 32 H 1.09002 * 109.46907 * 119.99946 * 2 1 3 33 33 H 1.09003 * 109.47029 * 59.99610 * 3 2 1 34 34 H 1.09002 * 109.47131 * 299.99809 * 3 2 1 35 35 H 1.08995 * 109.47153 * 24.12443 * 5 4 3 36 36 H 1.09004 * 109.46874 * 144.11723 * 5 4 3 37 37 H 1.09002 * 109.47392 * 299.99700 * 6 5 4 38 38 H 1.09002 * 109.47067 * 60.00635 * 6 5 4 39 39 H 1.09002 * 109.46930 * 180.02562 * 6 5 4 40 40 H 0.97003 * 119.99417 * 0.02562 * 11 9 7 41 41 H 1.09001 * 109.46788 * 60.00105 * 12 11 9 42 42 H 1.08995 * 109.47028 * 300.00411 * 12 11 9 43 43 H 1.07998 * 119.92658 * 0.02562 * 14 13 12 44 44 H 1.07996 * 119.96811 * 179.97438 * 15 14 13 45 45 H 1.07999 * 120.03890 * 180.31558 * 16 15 14 46 46 H 0.96993 * 119.99929 * 179.97438 * 22 21 19 47 47 H 1.07994 * 120.03275 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2369 1.4428 1.2697 6 6 4.6197 2.8777 1.6374 7 6 4.1793 1.4423 -1.1663 8 8 3.5770 1.3442 -2.2152 9 6 5.6690 1.5631 -1.1685 10 8 6.2725 1.6472 -0.1190 11 7 6.3421 1.5784 -2.3360 12 6 7.8024 1.6962 -2.3382 13 6 8.3047 1.6900 -3.7589 14 6 8.6318 0.4933 -4.3709 15 6 9.0936 0.4835 -5.6742 16 6 9.2234 1.6688 -6.3714 17 6 8.9013 2.8722 -5.7579 18 8 9.0336 4.0394 -6.4385 19 6 9.5953 3.9740 -7.6625 20 1 9.8417 3.0146 -8.0930 21 6 9.8564 5.1383 -8.3686 22 7 9.5557 6.3070 -7.8444 23 14 10.6338 5.0477 -10.0647 24 1 9.7536 4.2679 -10.9716 25 1 10.8085 6.4205 -10.6032 26 1 11.9580 4.3826 -9.9673 27 6 8.4384 2.8789 -4.4484 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6061 1.0228 2.0530 36 1 5.1398 0.8404 1.1685 37 1 5.2507 3.2976 0.8540 38 1 3.7168 3.4800 1.7387 39 1 5.1647 2.8778 2.5814 40 1 5.8596 1.5115 -3.1749 41 1 8.2354 0.8559 -1.7956 42 1 8.0923 2.6291 -1.8547 43 1 8.5262 -0.4352 -3.8295 44 1 9.3485 -0.4523 -6.1492 45 1 9.5793 1.6601 -7.3910 46 1 9.7387 7.1215 -8.3382 47 1 8.1836 3.8129 -3.9699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323047372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:23 Heat of formation + Delta-G solvation = -70.909584 kcal Electronic energy + Delta-G solvation = -28001.432741 eV Core-core repulsion = 23957.330048 eV Total energy + Delta-G solvation = -4044.102693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97735 -39.27878 -38.60372 -37.04527 -36.66846 -34.70438 -33.80275 -32.34520 -30.90886 -30.53697 -29.20030 -27.54717 -26.18212 -25.25098 -24.04298 -23.00601 -21.79321 -21.63268 -20.86262 -19.86419 -18.15246 -17.55467 -17.21231 -16.93209 -16.16000 -15.92094 -15.51013 -15.24410 -14.94775 -14.80800 -14.57649 -14.40341 -14.24996 -13.78012 -13.65486 -13.54921 -13.37196 -12.83563 -12.77091 -12.54906 -12.47025 -12.37085 -12.24395 -12.05290 -11.70681 -11.68181 -11.43958 -11.33561 -11.14294 -11.00186 -10.92999 -10.86037 -10.73240 -10.50315 -9.50158 -9.42896 -9.21264 -8.99318 -8.89476 -8.27513 -7.34859 -6.49673 -4.09280 1.35731 1.77493 2.23498 2.38368 3.10482 3.11262 3.13154 3.14486 3.42991 3.92166 4.27651 4.52145 4.60989 4.61349 4.76586 4.86938 4.94785 5.04946 5.06311 5.14233 5.20457 5.29571 5.31167 5.44234 5.48620 5.56152 5.66329 5.67675 5.72454 5.76469 5.80317 5.84030 5.91861 6.02782 6.05649 6.22512 6.23977 6.30819 6.52145 6.78881 6.82840 6.97127 7.14049 7.21046 7.26469 7.34011 7.64238 7.68630 7.94080 7.95182 8.95395 9.63537 10.67916 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002094 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.142840 B =13370.463919 C =13555.143266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.113 3.887 4 N -0.587 5.587 5 C 0.100 3.900 6 C -0.161 4.161 7 C 0.506 3.494 8 O -0.517 6.517 9 C 0.502 3.498 10 O -0.518 6.518 11 N -0.687 5.687 12 C 0.167 3.833 13 C -0.077 4.077 14 C -0.193 4.193 15 C -0.076 4.076 16 C -0.223 4.223 17 C 0.150 3.850 18 O -0.175 6.175 19 C -0.394 4.394 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.861 5.861 23 Si 0.942 3.058 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.169 4.169 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.066 0.934 40 H 0.415 0.585 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.271 0.729 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 -11.279 16.687 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.009 4.009 4 N -0.321 5.321 5 C -0.022 4.022 6 C -0.219 4.219 7 C 0.288 3.712 8 O -0.392 6.392 9 C 0.283 3.717 10 O -0.396 6.396 11 N -0.339 5.339 12 C 0.045 3.955 13 C -0.078 4.078 14 C -0.213 4.213 15 C -0.094 4.094 16 C -0.243 4.243 17 C 0.096 3.904 18 O -0.078 6.078 19 C -0.470 4.470 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.189 4.189 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.252 0.748 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.146 0.854 46 H 0.081 0.919 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.881 -10.755 16.859 23.261 hybrid contribution 0.219 -0.075 -1.283 1.304 sum -11.662 -10.830 15.576 22.269 Atomic orbital electron populations 1.21687 0.94919 1.02055 1.02012 1.21886 0.96337 0.96887 1.02755 1.21663 0.78242 0.97476 1.03558 1.47904 1.06804 1.71125 1.06272 1.21989 0.97533 0.99067 0.83576 1.22112 1.01138 0.96181 1.02501 1.20272 0.88611 0.78100 0.84185 1.90777 1.69838 1.47629 1.30967 1.20032 0.88212 0.78784 0.84698 1.90694 1.69856 1.48625 1.30402 1.46016 1.08287 1.70813 1.08822 1.20296 0.77898 1.02871 0.94423 1.19199 1.01290 0.93304 0.93980 1.20474 1.08388 0.96296 0.96124 1.20746 0.97551 0.97001 0.94108 1.21256 1.09175 0.92182 1.01682 1.19316 0.93108 0.86835 0.91149 1.83984 1.68968 1.25593 1.29284 1.21279 1.40362 0.94694 0.90647 0.89061 1.25303 0.97061 0.94144 0.99969 1.70027 1.43907 0.97548 1.38022 0.85771 0.79445 0.77958 0.80210 1.19457 1.20243 1.19467 1.20082 1.08127 0.97584 0.93068 0.92387 0.92627 0.92337 0.91285 0.91804 0.90090 0.89624 0.90997 0.87628 0.91495 0.93377 0.91541 0.74816 0.90302 0.90220 0.87441 0.87200 0.85402 0.91877 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.14 -1.07 6.26 -26.73 -0.17 -1.23 16 3 C 0.11 0.94 5.34 -4.04 -0.02 0.92 16 4 N -0.59 -6.02 2.49 -174.19 -0.43 -6.45 16 5 C 0.10 0.87 5.70 -4.04 -0.02 0.85 16 6 C -0.16 -1.45 9.63 37.15 0.36 -1.09 16 7 C 0.51 6.58 7.68 -11.59 -0.09 6.50 16 8 O -0.52 -7.90 16.11 5.49 0.09 -7.82 16 9 C 0.50 6.73 7.56 -11.58 -0.09 6.64 16 10 O -0.52 -7.16 11.45 5.50 0.06 -7.09 16 11 N -0.69 -9.39 5.54 -61.91 -0.34 -9.73 16 12 C 0.17 2.33 5.80 -5.20 -0.03 2.30 16 13 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 14 C -0.19 -3.14 9.70 -39.53 -0.38 -3.52 16 15 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 16 C -0.22 -4.66 9.17 -39.39 -0.36 -5.03 16 17 C 0.15 3.50 6.65 -39.11 -0.26 3.24 16 18 O -0.18 -4.89 9.76 0.02 0.00 -4.89 16 19 C -0.39 -10.79 9.49 30.89 0.29 -10.50 16 20 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 23 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.17 -3.40 9.65 -39.39 -0.38 -3.78 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 34 H 0.09 0.82 7.50 -51.93 -0.39 0.43 16 35 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 36 H 0.11 1.06 5.79 -51.93 -0.30 0.76 16 37 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.42 5.81 7.94 -40.82 -0.32 5.49 16 41 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 42 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 46 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -30.91 393.45 -7.74 -38.65 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.96 Total: 8.19 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.83 Total: -7.80 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.02 Total: -40.38 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: 0.15 Total: -19.80 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.91 -7.74 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323047372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.260 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds