Wall clock time and date at job start Tue Mar 31 2020 18:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47231 * 2 1 4 4 N 1.46498 * 109.47567 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.99941 * 270.00141 * 4 3 2 6 6 C 1.52994 * 109.46935 * 264.11820 * 5 4 3 7 7 C 1.34773 * 120.00046 * 89.99471 * 4 3 2 8 8 O 1.21354 * 120.00196 * 354.65788 * 7 4 3 9 9 C 1.49452 * 119.99924 * 174.65079 * 7 4 3 10 10 O 1.21351 * 120.00299 * 0.77331 * 9 7 4 11 11 N 1.34780 * 120.00021 * 180.76882 * 9 7 4 12 12 C 1.46499 * 120.00285 * 180.02562 * 11 9 7 13 13 C 1.50694 * 109.47368 * 180.02562 * 12 11 9 14 14 C 1.38329 * 119.96627 * 269.98233 * 13 12 11 15 15 C 1.38274 * 120.13753 * 180.02562 * 14 13 12 16 16 C 1.38125 * 120.07165 * 359.67655 * 15 14 13 17 17 C 1.38863 * 119.92484 * 0.59707 * 16 15 14 18 18 O 1.35759 * 120.06585 * 179.69752 * 17 16 15 19 19 C 1.34831 * 116.99840 * 354.20208 * 18 17 16 20 20 H 1.08000 * 120.00316 * 5.04514 * 19 18 17 21 21 C 1.38654 * 119.99659 * 185.04437 * 19 18 17 22 22 N 1.31562 * 120.00136 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99877 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47204 * 60.00058 * 23 21 19 25 25 H 1.48500 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47141 * 299.99547 * 23 21 19 27 27 C 1.38087 * 119.96509 * 89.99747 * 13 12 11 28 28 H 1.08996 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47433 * 300.00143 * 1 2 3 30 30 H 1.09002 * 109.46907 * 60.00054 * 1 2 3 31 31 H 1.09003 * 109.47433 * 239.99857 * 2 1 3 32 32 H 1.09002 * 109.46907 * 119.99946 * 2 1 3 33 33 H 1.09003 * 109.47029 * 59.99610 * 3 2 1 34 34 H 1.09002 * 109.47131 * 299.99809 * 3 2 1 35 35 H 1.08995 * 109.47153 * 24.12443 * 5 4 3 36 36 H 1.09004 * 109.46874 * 144.11723 * 5 4 3 37 37 H 1.09002 * 109.47392 * 299.99700 * 6 5 4 38 38 H 1.09002 * 109.47067 * 60.00635 * 6 5 4 39 39 H 1.09002 * 109.46930 * 180.02562 * 6 5 4 40 40 H 0.97003 * 119.99417 * 0.02562 * 11 9 7 41 41 H 1.09001 * 109.46788 * 60.00105 * 12 11 9 42 42 H 1.08995 * 109.47028 * 300.00411 * 12 11 9 43 43 H 1.07998 * 119.92658 * 0.02562 * 14 13 12 44 44 H 1.07996 * 119.96811 * 179.97438 * 15 14 13 45 45 H 1.07999 * 120.03890 * 180.31558 * 16 15 14 46 46 H 0.96993 * 119.99929 * 179.97438 * 22 21 19 47 47 H 1.07994 * 120.03275 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2369 1.4428 1.2697 6 6 4.6197 2.8777 1.6374 7 6 4.1793 1.4423 -1.1663 8 8 3.5770 1.3442 -2.2152 9 6 5.6690 1.5631 -1.1685 10 8 6.2725 1.6472 -0.1190 11 7 6.3421 1.5784 -2.3360 12 6 7.8024 1.6962 -2.3382 13 6 8.3047 1.6900 -3.7589 14 6 8.6318 0.4933 -4.3709 15 6 9.0936 0.4835 -5.6742 16 6 9.2234 1.6688 -6.3714 17 6 8.9013 2.8722 -5.7579 18 8 9.0336 4.0394 -6.4385 19 6 9.5953 3.9740 -7.6625 20 1 9.8417 3.0146 -8.0930 21 6 9.8564 5.1383 -8.3686 22 7 9.5557 6.3070 -7.8444 23 14 10.6338 5.0477 -10.0647 24 1 9.7536 4.2679 -10.9716 25 1 10.8085 6.4205 -10.6032 26 1 11.9580 4.3826 -9.9673 27 6 8.4384 2.8789 -4.4484 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.6061 1.0228 2.0530 36 1 5.1398 0.8404 1.1685 37 1 5.2507 3.2976 0.8540 38 1 3.7168 3.4800 1.7387 39 1 5.1647 2.8778 2.5814 40 1 5.8596 1.5115 -3.1749 41 1 8.2354 0.8559 -1.7956 42 1 8.0923 2.6291 -1.8547 43 1 8.5262 -0.4352 -3.8295 44 1 9.3485 -0.4523 -6.1492 45 1 9.5793 1.6601 -7.3910 46 1 9.7387 7.1215 -8.3382 47 1 8.1836 3.8129 -3.9699 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323047372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:22 Heat of formation + Delta-G solvation = -90.399137 kcal Electronic energy + Delta-G solvation = -28002.277871 eV Core-core repulsion = 23957.330048 eV Total energy + Delta-G solvation = -4044.947824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98801 -40.86238 -39.73978 -38.50474 -37.73642 -35.85289 -34.51679 -34.28980 -32.31185 -31.28728 -30.81292 -28.50986 -27.53982 -26.90734 -24.94549 -23.84691 -23.27625 -22.58103 -22.27502 -20.89782 -19.60719 -19.02019 -18.54123 -18.12344 -17.19370 -16.95470 -16.74541 -16.55738 -16.29625 -16.08791 -15.67498 -15.59615 -15.47892 -15.23609 -14.98284 -14.54506 -14.38376 -14.23327 -13.96995 -13.70527 -13.53733 -13.38612 -13.24478 -13.03445 -12.96253 -12.77911 -12.53632 -12.41576 -12.31588 -12.28986 -12.22513 -12.15281 -11.92286 -11.61752 -11.23237 -10.81723 -10.53649 -10.28113 -9.85718 -9.77443 -9.05097 -8.47681 -6.16407 0.31516 0.32120 0.68863 1.34856 1.35429 1.46154 1.51137 2.09436 2.17043 2.43402 2.83472 3.12806 3.32279 3.36526 3.78415 3.95936 4.00230 4.07196 4.11674 4.28377 4.36443 4.38149 4.41666 4.49873 4.52074 4.58789 4.63420 4.66957 4.71054 4.84719 4.90423 4.98034 4.99328 5.10226 5.14255 5.16502 5.20361 5.23655 5.34466 5.41219 5.50244 5.59693 5.67774 5.69557 5.90915 6.00473 6.14222 6.20203 6.62548 6.90172 6.96778 7.76760 8.75164 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017716 B = 0.002094 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.142840 B =13370.463919 C =13555.143266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.108 3.892 4 N -0.578 5.578 5 C 0.099 3.901 6 C -0.158 4.158 7 C 0.501 3.499 8 O -0.548 6.548 9 C 0.504 3.496 10 O -0.521 6.521 11 N -0.690 5.690 12 C 0.174 3.826 13 C -0.064 4.064 14 C -0.167 4.167 15 C -0.071 4.071 16 C -0.233 4.233 17 C 0.110 3.890 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.256 1.256 27 C -0.181 4.181 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.413 0.587 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.121 0.879 46 H 0.272 0.728 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.505 -14.385 18.560 26.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.013 4.013 4 N -0.310 5.310 5 C -0.022 4.022 6 C -0.216 4.216 7 C 0.284 3.716 8 O -0.427 6.427 9 C 0.285 3.715 10 O -0.398 6.398 11 N -0.342 5.342 12 C 0.052 3.948 13 C -0.065 4.065 14 C -0.186 4.186 15 C -0.089 4.089 16 C -0.253 4.253 17 C 0.060 3.940 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.121 0.879 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.201 4.201 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.250 0.750 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.168 0.832 44 H 0.167 0.833 45 H 0.139 0.861 46 H 0.081 0.919 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.438 -13.919 18.806 26.497 hybrid contribution 0.277 0.631 -1.528 1.676 sum -12.161 -13.288 17.278 24.960 Atomic orbital electron populations 1.21671 0.93679 1.02552 1.02477 1.21826 0.97354 0.95988 1.02105 1.21869 0.76928 0.98280 1.04217 1.48069 1.07719 1.69219 1.05994 1.22109 0.97737 0.98897 0.83497 1.22070 1.01213 0.96232 1.02062 1.20246 0.88378 0.78328 0.84691 1.90764 1.70182 1.49598 1.32115 1.20125 0.88512 0.78486 0.84420 1.90700 1.70047 1.48670 1.30410 1.45954 1.08065 1.71179 1.08976 1.20254 0.78206 1.03860 0.92485 1.19451 0.99757 0.92257 0.94993 1.21033 1.04542 0.97493 0.95553 1.21178 0.96178 0.97077 0.94443 1.21394 1.09364 0.92706 1.01794 1.19878 0.94885 0.86871 0.92391 1.83950 1.71701 1.28034 1.30158 1.21791 1.40527 0.95550 0.91096 0.87910 1.26606 0.97561 0.93471 1.04519 1.70182 1.46927 0.98445 1.40327 0.84648 0.78848 0.78264 0.74472 1.18125 1.19795 1.18071 1.20254 1.08495 0.98890 0.92440 0.91902 0.90949 0.93096 0.93812 0.90510 0.87111 0.91266 0.87635 0.88806 0.94401 0.92353 0.90240 0.75039 0.87920 0.90512 0.83170 0.83271 0.86106 0.91865 0.87329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.79 6.26 30.59 0.19 -1.60 16 3 C 0.11 1.61 5.34 86.38 0.46 2.07 16 4 N -0.58 -10.92 2.49 -823.39 -2.05 -12.97 16 5 C 0.10 1.47 5.70 86.38 0.49 1.96 16 6 C -0.16 -2.51 9.63 71.98 0.69 -1.82 16 7 C 0.50 12.74 7.68 87.27 0.67 13.42 16 8 O -0.55 -16.88 16.11 -3.26 -0.05 -16.93 16 9 C 0.50 12.99 7.56 87.27 0.66 13.65 16 10 O -0.52 -13.63 11.45 -3.25 -0.04 -13.67 16 11 N -0.69 -18.03 5.54 -468.15 -2.59 -20.62 16 12 C 0.17 4.50 5.80 85.63 0.50 5.00 16 13 C -0.06 -2.03 5.25 -19.88 -0.10 -2.13 16 14 C -0.17 -4.78 9.70 22.30 0.22 -4.57 16 15 C -0.07 -2.26 10.04 22.25 0.22 -2.03 16 16 C -0.23 -9.74 9.17 22.39 0.21 -9.54 16 17 C 0.11 5.36 6.65 22.58 0.15 5.51 16 18 O -0.23 -13.85 9.76 -22.85 -0.22 -14.08 16 19 C -0.41 -23.90 9.49 67.92 0.64 -23.25 16 20 H 0.10 5.39 5.21 -2.91 -0.02 5.38 16 21 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 22 N -0.92 -56.67 13.67 21.61 0.30 -56.37 16 23 Si 1.02 42.67 29.55 68.60 2.03 44.70 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 27 C -0.18 -7.50 9.65 22.39 0.22 -7.28 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.01 8.07 -2.39 -0.02 0.99 16 34 H 0.07 1.29 7.50 -2.39 -0.02 1.27 16 35 H 0.11 0.92 8.03 -2.39 -0.02 0.90 16 36 H 0.09 1.68 5.79 -2.38 -0.01 1.67 16 37 H 0.04 0.83 6.44 -2.39 -0.02 0.81 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.41 11.30 7.94 -92.71 -0.74 10.57 16 41 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 42 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 43 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 44 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 45 H 0.12 5.13 5.64 -2.91 -0.02 5.12 16 46 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 47 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -73.32 393.45 4.02 -69.30 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.25 Total: 32.92 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 6.40 Total: -12.29 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -4.35 Total: -89.96 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.31 Total: -44.67 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.32 4.02 -69.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323047372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.097 kcal (2) G-P(sol) polarization free energy of solvation -73.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds