Wall clock time and date at job start Tue Mar 31 2020 17:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47090 * 103.67101 * 3 2 1 5 5 N 1.46498 * 109.47088 * 343.66665 * 3 2 1 6 6 C 1.34780 * 119.99789 * 85.00493 * 5 3 2 7 7 O 1.21355 * 119.99787 * 359.97438 * 6 5 3 8 8 C 1.49449 * 120.00085 * 179.97438 * 6 5 3 9 9 O 1.21345 * 119.99874 * 6.74289 * 8 6 5 10 10 N 1.34779 * 119.99900 * 186.74111 * 8 6 5 11 11 C 1.46928 * 120.63003 * 8.42887 * 10 8 6 12 12 C 1.53626 * 108.54486 * 126.36543 * 11 10 8 13 13 C 1.53042 * 109.24268 * 54.85429 * 12 11 10 14 14 C 1.50697 * 109.44987 * 178.49971 * 13 12 11 15 15 H 1.07992 * 120.00095 * 120.06567 * 14 13 12 16 16 C 1.37877 * 119.99656 * 300.05893 * 14 13 12 17 17 N 1.31517 * 120.00465 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47174 * 89.99959 * 18 16 14 20 20 H 1.48498 * 109.47375 * 210.00564 * 18 16 14 21 21 H 1.48508 * 109.46923 * 330.00038 * 18 16 14 22 22 C 1.53047 * 109.53780 * 298.51427 * 13 12 11 23 23 C 1.46921 * 120.63078 * 188.69930 * 10 8 6 24 24 C 1.53000 * 109.46815 * 223.67050 * 3 2 1 25 25 H 1.09000 * 109.87169 * 174.29776 * 24 3 2 26 26 C 1.54096 * 109.88264 * 295.30550 * 24 3 2 27 27 C 1.54813 * 104.18910 * 121.60236 * 26 24 3 28 28 C 1.54993 * 102.08971 * 20.88477 * 27 26 24 29 29 O 1.43742 * 110.00549 * 53.21331 * 24 3 2 30 30 H 4.18733 * 15.04017 * 359.97438 * 4 2 1 31 31 H 0.96997 * 120.00970 * 264.99874 * 5 3 2 32 32 H 1.08997 * 109.58761 * 246.19904 * 11 10 8 33 33 H 1.09005 * 109.58761 * 6.62248 * 11 10 8 34 34 H 1.09000 * 109.63431 * 294.86346 * 12 11 10 35 35 H 1.09004 * 109.43098 * 174.72393 * 12 11 10 36 36 H 1.09004 * 109.45973 * 58.53032 * 13 12 11 37 37 H 0.97000 * 119.99940 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.49569 * 301.41218 * 22 13 12 39 39 H 1.09000 * 109.52239 * 181.33379 * 22 13 12 40 40 H 1.09004 * 109.58945 * 353.38285 * 23 10 8 41 41 H 1.09011 * 109.58377 * 113.65700 * 23 10 8 42 42 H 1.08999 * 110.48879 * 240.28474 * 26 24 3 43 43 H 1.09004 * 110.48820 * 2.79890 * 26 24 3 44 44 H 1.09003 * 110.90410 * 139.08113 * 27 26 24 45 45 H 1.08992 * 110.90813 * 262.68264 * 27 26 24 46 46 H 1.08998 * 110.62258 * 81.47942 * 28 27 26 47 47 H 1.09004 * 110.61893 * 204.47262 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2437 -0.9985 5 7 3.1349 -1.3246 0.3884 6 6 3.2641 -2.2937 -0.5393 7 8 2.9750 -2.0686 -1.6962 8 6 3.7634 -3.6455 -0.1432 9 8 3.9360 -3.9092 1.0286 10 7 4.0219 -4.5717 -1.0876 11 6 3.9962 -4.2152 -2.5127 12 6 5.3294 -4.6401 -3.1468 13 6 5.5655 -6.1277 -2.8756 14 6 6.8543 -6.5581 -3.5272 15 1 7.6555 -6.9607 -2.9253 16 6 7.0105 -6.4380 -4.8918 17 7 6.0350 -5.9474 -5.6248 18 14 8.6079 -6.9723 -5.6997 19 1 8.5126 -8.4028 -6.0865 20 1 8.8505 -6.1471 -6.9102 21 1 9.7304 -6.7914 -4.7443 22 6 5.6530 -6.3652 -1.3662 23 6 4.3291 -5.9585 -0.7117 24 6 3.1554 1.0443 0.9961 25 1 4.2407 0.9812 1.0762 26 6 2.7455 2.4554 0.5322 27 6 1.9091 3.0138 1.7093 28 6 2.3774 2.1258 2.8902 29 8 2.5568 0.8274 2.2848 30 1 -1.0500 -0.0005 0.0001 31 1 3.3657 -1.5047 1.3132 32 1 3.1730 -4.7336 -3.0042 33 1 3.8669 -3.1379 -2.6176 34 1 6.1428 -4.0578 -2.7141 35 1 5.2904 -4.4681 -4.2225 36 1 4.7392 -6.7074 -3.2871 37 1 6.1451 -5.8626 -6.5848 38 1 6.4635 -5.7666 -0.9502 39 1 5.8448 -7.4208 -1.1741 40 1 4.4195 -6.0319 0.3721 41 1 3.5311 -6.6159 -1.0571 42 1 3.6277 3.0731 0.3642 43 1 2.1422 2.3990 -0.3739 44 1 2.1467 4.0617 1.8925 45 1 0.8428 2.8846 1.5245 46 1 3.3197 2.4933 3.2967 47 1 1.6133 2.0851 3.6665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323528628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:52 Heat of formation + Delta-G solvation = -45.521244 kcal Electronic energy + Delta-G solvation = -29098.110465 eV Core-core repulsion = 25055.108692 eV Total energy + Delta-G solvation = -4043.001772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83673 -39.95958 -38.45272 -36.97123 -35.71150 -33.51221 -32.83805 -32.27322 -31.20800 -30.42235 -30.01277 -26.99410 -26.10142 -24.16183 -22.73793 -22.40529 -22.10527 -21.70951 -20.15076 -19.08380 -18.53504 -17.45378 -17.04345 -16.67899 -16.42549 -16.06354 -15.87994 -15.56986 -15.40501 -14.63249 -14.52035 -14.21142 -14.03641 -13.82586 -13.37726 -13.19962 -13.04740 -12.84192 -12.64348 -12.30322 -12.17705 -11.99601 -11.67995 -11.60764 -11.36609 -11.25288 -10.96281 -10.86612 -10.75669 -10.59805 -10.43622 -10.35892 -10.06802 -10.04314 -9.69104 -9.57352 -9.21371 -9.15852 -8.59623 -8.33699 -8.05379 -5.99425 -4.05965 1.60569 2.17319 2.68948 2.95537 3.30122 3.36861 3.37358 3.40369 3.43271 3.80721 4.02306 4.20144 4.33449 4.43249 4.47255 4.56919 4.62850 4.84794 5.04001 5.12864 5.25905 5.30131 5.34847 5.37433 5.52046 5.63649 5.65956 5.78440 5.84573 5.90523 6.05685 6.11236 6.26941 6.44533 6.45645 6.60923 6.70633 6.80513 6.99889 7.12331 7.17816 7.32172 7.47757 7.68102 7.78273 7.88880 7.96382 8.08614 8.26760 8.43356 8.97370 9.58827 11.05950 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002463 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.714195 B =11367.714892 C =11741.055227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.259 3.741 4 H 0.124 0.876 5 N -0.696 5.696 6 C 0.513 3.487 7 O -0.501 6.501 8 C 0.501 3.499 9 O -0.541 6.541 10 N -0.562 5.562 11 C 0.065 3.935 12 C -0.122 4.122 13 C 0.045 3.955 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.122 4.122 23 C 0.107 3.893 24 C 0.073 3.927 25 H 0.089 0.911 26 C -0.149 4.149 27 C -0.153 4.153 28 C 0.047 3.953 29 O -0.365 6.365 30 H 0.217 0.783 31 H 0.419 0.581 32 H 0.062 0.938 33 H 0.122 0.878 34 H 0.037 0.963 35 H 0.105 0.895 36 H 0.028 0.972 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 18.111 13.665 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.190 4.190 3 C 0.154 3.846 4 H 0.141 0.859 5 N -0.350 5.350 6 C 0.295 3.705 7 O -0.376 6.376 8 C 0.283 3.717 9 O -0.420 6.420 10 N -0.293 5.293 11 C -0.055 4.055 12 C -0.160 4.160 13 C 0.027 3.973 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.160 4.160 23 C -0.014 4.014 24 C 0.015 3.985 25 H 0.107 0.893 26 C -0.187 4.187 27 C -0.190 4.190 28 C -0.030 4.030 29 O -0.284 6.284 30 H 0.234 0.766 31 H 0.256 0.744 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.673 17.930 13.317 24.339 hybrid contribution 0.756 -0.267 -0.287 0.852 sum -8.918 17.663 13.030 23.691 Atomic orbital electron populations 1.24850 0.95775 0.98376 1.00859 1.22920 0.94142 1.01660 1.00241 1.18126 0.84467 0.82367 0.99603 0.85899 1.45775 1.65517 1.10539 1.13144 1.20510 0.78473 0.86000 0.85503 1.90562 1.48022 1.81201 1.17857 1.19789 0.80344 0.85524 0.86057 1.90705 1.53319 1.80223 1.17765 1.48216 1.63621 1.09389 1.08085 1.23196 1.00561 1.04505 0.77256 1.22104 0.92143 0.98713 1.03078 1.18686 0.97336 0.92606 0.88676 1.21189 1.00350 1.41360 0.92139 0.92716 1.24969 0.96434 0.95190 0.97426 1.69848 1.31744 1.45502 1.05815 0.86619 0.84031 0.78536 0.78947 1.20745 1.21261 1.20011 1.22005 0.94229 1.00257 0.99505 1.21891 0.98872 0.80166 1.00515 1.23037 0.97858 0.93728 0.83902 0.89325 1.22945 1.01114 0.94663 0.99955 1.23111 1.01036 1.00155 0.94739 1.23569 1.00674 0.82785 0.95923 1.88938 1.82426 1.27739 1.29310 0.76632 0.74355 0.91985 0.86062 0.94461 0.87661 0.95428 0.92969 0.92798 0.91891 0.90089 0.91520 0.89792 0.89713 0.90038 0.90345 0.91911 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 19.25 29.55 0.57 -1.36 16 2 C -0.19 -2.25 11.41 -37.12 -0.42 -2.68 16 3 C 0.26 2.88 2.20 -70.72 -0.16 2.72 16 4 H 0.12 1.35 7.58 -51.93 -0.39 0.95 16 5 N -0.70 -9.19 5.02 -56.98 -0.29 -9.47 16 6 C 0.51 8.35 7.69 -11.58 -0.09 8.26 16 7 O -0.50 -8.93 12.84 5.49 0.07 -8.86 16 8 C 0.50 9.14 7.73 -11.58 -0.09 9.05 16 9 O -0.54 -10.40 15.93 5.50 0.09 -10.31 16 10 N -0.56 -10.75 2.97 -173.01 -0.51 -11.26 16 11 C 0.07 1.31 6.01 -3.48 -0.02 1.29 16 12 C -0.12 -2.84 5.17 -26.38 -0.14 -2.98 16 13 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 14 C -0.51 -13.84 8.56 -34.44 -0.29 -14.13 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.89 -24.94 11.30 55.43 0.63 -24.31 16 18 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 23 C 0.11 1.99 6.44 -3.72 -0.02 1.96 16 24 C 0.07 0.63 3.23 -26.16 -0.08 0.54 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 C -0.15 -0.95 6.28 -25.20 -0.16 -1.11 16 27 C -0.15 -0.86 7.15 -24.72 -0.18 -1.04 16 28 C 0.05 0.31 7.72 38.21 0.29 0.61 16 29 O -0.37 -3.59 10.47 -35.23 -0.37 -3.96 16 30 H 0.22 1.55 7.80 -54.09 -0.42 1.13 16 31 H 0.42 5.33 7.96 -40.82 -0.32 5.00 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.12 2.40 4.30 -54.84 -0.24 2.17 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.11 2.73 6.03 -51.93 -0.31 2.41 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.44 7.01 -51.93 -0.36 1.07 16 41 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.57 7.25 -51.93 -0.38 0.19 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -31.38 382.58 -7.90 -39.28 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.04 Total: 6.08 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -1.21 Total: 0.96 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.17 Total: -45.05 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.21 Total: -23.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.38 -7.90 -39.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323528628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.246 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds