Wall clock time and date at job start Tue Mar 31 2020 17:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47090 * 103.67101 * 3 2 1 5 5 N 1.46498 * 109.47088 * 343.66665 * 3 2 1 6 6 C 1.34780 * 119.99789 * 85.00493 * 5 3 2 7 7 O 1.21355 * 119.99787 * 359.97438 * 6 5 3 8 8 C 1.49449 * 120.00085 * 179.97438 * 6 5 3 9 9 O 1.21345 * 119.99874 * 6.74289 * 8 6 5 10 10 N 1.34779 * 119.99900 * 186.74111 * 8 6 5 11 11 C 1.46928 * 120.63003 * 8.42887 * 10 8 6 12 12 C 1.53626 * 108.54486 * 126.36543 * 11 10 8 13 13 C 1.53042 * 109.24268 * 54.85429 * 12 11 10 14 14 C 1.50697 * 109.44987 * 178.49971 * 13 12 11 15 15 H 1.07992 * 120.00095 * 120.06567 * 14 13 12 16 16 C 1.37877 * 119.99656 * 300.05893 * 14 13 12 17 17 N 1.31517 * 120.00465 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47174 * 89.99959 * 18 16 14 20 20 H 1.48498 * 109.47375 * 210.00564 * 18 16 14 21 21 H 1.48508 * 109.46923 * 330.00038 * 18 16 14 22 22 C 1.53047 * 109.53780 * 298.51427 * 13 12 11 23 23 C 1.46921 * 120.63078 * 188.69930 * 10 8 6 24 24 C 1.53000 * 109.46815 * 223.67050 * 3 2 1 25 25 H 1.09000 * 109.87169 * 174.29776 * 24 3 2 26 26 C 1.54096 * 109.88264 * 295.30550 * 24 3 2 27 27 C 1.54813 * 104.18910 * 121.60236 * 26 24 3 28 28 C 1.54993 * 102.08971 * 20.88477 * 27 26 24 29 29 O 1.43742 * 110.00549 * 53.21331 * 24 3 2 30 30 H 4.18733 * 15.04017 * 359.97438 * 4 2 1 31 31 H 0.96997 * 120.00970 * 264.99874 * 5 3 2 32 32 H 1.08997 * 109.58761 * 246.19904 * 11 10 8 33 33 H 1.09005 * 109.58761 * 6.62248 * 11 10 8 34 34 H 1.09000 * 109.63431 * 294.86346 * 12 11 10 35 35 H 1.09004 * 109.43098 * 174.72393 * 12 11 10 36 36 H 1.09004 * 109.45973 * 58.53032 * 13 12 11 37 37 H 0.97000 * 119.99940 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.49569 * 301.41218 * 22 13 12 39 39 H 1.09000 * 109.52239 * 181.33379 * 22 13 12 40 40 H 1.09004 * 109.58945 * 353.38285 * 23 10 8 41 41 H 1.09011 * 109.58377 * 113.65700 * 23 10 8 42 42 H 1.08999 * 110.48879 * 240.28474 * 26 24 3 43 43 H 1.09004 * 110.48820 * 2.79890 * 26 24 3 44 44 H 1.09003 * 110.90410 * 139.08113 * 27 26 24 45 45 H 1.08992 * 110.90813 * 262.68264 * 27 26 24 46 46 H 1.08998 * 110.62258 * 81.47942 * 28 27 26 47 47 H 1.09004 * 110.61893 * 204.47262 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.2437 -0.9985 5 7 3.1349 -1.3246 0.3884 6 6 3.2641 -2.2937 -0.5393 7 8 2.9750 -2.0686 -1.6962 8 6 3.7634 -3.6455 -0.1432 9 8 3.9360 -3.9092 1.0286 10 7 4.0219 -4.5717 -1.0876 11 6 3.9962 -4.2152 -2.5127 12 6 5.3294 -4.6401 -3.1468 13 6 5.5655 -6.1277 -2.8756 14 6 6.8543 -6.5581 -3.5272 15 1 7.6555 -6.9607 -2.9253 16 6 7.0105 -6.4380 -4.8918 17 7 6.0350 -5.9474 -5.6248 18 14 8.6079 -6.9723 -5.6997 19 1 8.5126 -8.4028 -6.0865 20 1 8.8505 -6.1471 -6.9102 21 1 9.7304 -6.7914 -4.7443 22 6 5.6530 -6.3652 -1.3662 23 6 4.3291 -5.9585 -0.7117 24 6 3.1554 1.0443 0.9961 25 1 4.2407 0.9812 1.0762 26 6 2.7455 2.4554 0.5322 27 6 1.9091 3.0138 1.7093 28 6 2.3774 2.1258 2.8902 29 8 2.5568 0.8274 2.2848 30 1 -1.0500 -0.0005 0.0001 31 1 3.3657 -1.5047 1.3132 32 1 3.1730 -4.7336 -3.0042 33 1 3.8669 -3.1379 -2.6176 34 1 6.1428 -4.0578 -2.7141 35 1 5.2904 -4.4681 -4.2225 36 1 4.7392 -6.7074 -3.2871 37 1 6.1451 -5.8626 -6.5848 38 1 6.4635 -5.7666 -0.9502 39 1 5.8448 -7.4208 -1.1741 40 1 4.4195 -6.0319 0.3721 41 1 3.5311 -6.6159 -1.0571 42 1 3.6277 3.0731 0.3642 43 1 2.1422 2.3990 -0.3739 44 1 2.1467 4.0617 1.8925 45 1 0.8428 2.8846 1.5245 46 1 3.3197 2.4933 3.2967 47 1 1.6133 2.0851 3.6665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323528628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:51 Heat of formation + Delta-G solvation = -65.645017 kcal Electronic energy + Delta-G solvation = -29098.983097 eV Core-core repulsion = 25055.108692 eV Total energy + Delta-G solvation = -4043.874405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12567 -40.78706 -39.75263 -38.59608 -36.77559 -35.32301 -33.74277 -33.04091 -32.91293 -31.74248 -31.16108 -28.48933 -27.32386 -25.62558 -24.18149 -23.64921 -23.21320 -22.45291 -21.53472 -20.58280 -19.51507 -18.76300 -18.38136 -18.17524 -17.52840 -17.25103 -16.86761 -16.68221 -16.47304 -16.38191 -15.76012 -15.41921 -15.26420 -14.79782 -14.65373 -14.56726 -14.52002 -14.23992 -13.96338 -13.89549 -13.40965 -13.18307 -12.82932 -12.67877 -12.51767 -12.49814 -12.37338 -12.15317 -12.08733 -11.96302 -11.76642 -11.63851 -11.50670 -11.19320 -11.04246 -11.00800 -10.73696 -10.67605 -10.44808 -10.10461 -9.70574 -8.06978 -6.20934 0.23443 1.04711 1.41906 1.43335 1.52768 1.81154 1.88346 2.04744 2.44450 2.53590 2.82003 3.19397 3.21452 3.31416 3.57690 3.74784 3.95873 4.08840 4.11421 4.23976 4.28085 4.30842 4.40249 4.49170 4.49509 4.54406 4.71363 4.77912 4.80618 4.84408 4.93241 4.96417 5.03023 5.08331 5.13889 5.18469 5.19056 5.22383 5.37555 5.45844 5.63289 5.87416 5.92314 5.97629 6.10293 6.23769 6.38454 6.58893 6.65277 6.83763 6.89459 7.46863 8.96689 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020756 B = 0.002463 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.714195 B =11367.714892 C =11741.055227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.224 4.224 3 C 0.253 3.747 4 H 0.122 0.878 5 N -0.680 5.680 6 C 0.515 3.485 7 O -0.520 6.520 8 C 0.502 3.498 9 O -0.549 6.549 10 N -0.569 5.569 11 C 0.082 3.918 12 C -0.112 4.112 13 C 0.042 3.958 14 C -0.533 4.533 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.914 5.914 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.112 4.112 23 C 0.111 3.889 24 C 0.075 3.925 25 H 0.098 0.902 26 C -0.146 4.146 27 C -0.147 4.147 28 C 0.040 3.960 29 O -0.391 6.391 30 H 0.245 0.755 31 H 0.422 0.578 32 H 0.059 0.941 33 H 0.130 0.870 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.003 0.997 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 19.368 14.794 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.225 4.225 3 C 0.150 3.850 4 H 0.140 0.860 5 N -0.333 5.333 6 C 0.297 3.703 7 O -0.397 6.397 8 C 0.284 3.716 9 O -0.428 6.428 10 N -0.301 5.301 11 C -0.039 4.039 12 C -0.151 4.151 13 C 0.024 3.976 14 C -0.571 4.571 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.553 5.553 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.150 4.150 23 C -0.010 4.010 24 C 0.017 3.983 25 H 0.115 0.885 26 C -0.184 4.184 27 C -0.185 4.185 28 C -0.036 4.036 29 O -0.310 6.310 30 H 0.262 0.738 31 H 0.260 0.740 32 H 0.077 0.923 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.021 0.979 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.120 0.880 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.863 19.210 14.490 26.005 hybrid contribution 0.759 -0.629 -0.570 1.138 sum -9.104 18.582 13.921 24.939 Atomic orbital electron populations 1.25662 0.96698 0.96912 0.99675 1.23247 0.94822 1.03013 1.01433 1.18388 0.84560 0.81558 1.00483 0.86049 1.45772 1.64061 1.10791 1.12645 1.20156 0.78679 0.85759 0.85698 1.90538 1.49341 1.81301 1.18569 1.20116 0.79669 0.86091 0.85677 1.90694 1.53546 1.80584 1.18018 1.48202 1.64269 1.09905 1.07695 1.22938 0.98378 1.04839 0.77777 1.21877 0.93638 0.98035 1.01508 1.18659 0.95388 0.92692 0.90905 1.21540 1.01296 1.41572 0.92701 0.93065 1.25701 0.99426 0.95292 0.98054 1.69977 1.33317 1.46104 1.05950 0.85657 0.80413 0.78210 0.77956 1.20210 1.20933 1.19586 1.21849 0.95392 1.00838 0.96956 1.21867 0.97923 0.80227 1.00994 1.23083 0.98090 0.93949 0.83182 0.88463 1.22969 1.01982 0.93538 0.99934 1.23098 1.00445 1.01103 0.93844 1.23772 1.01643 0.81818 0.96322 1.88904 1.82667 1.29688 1.29778 0.73835 0.74006 0.92255 0.85332 0.95457 0.90443 0.97885 0.92968 0.93550 0.90918 0.88791 0.90317 0.87893 0.90236 0.87953 0.91039 0.90632 0.88297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 19.25 74.32 1.43 -1.97 16 2 C -0.22 -5.14 11.41 31.12 0.36 -4.78 16 3 C 0.25 5.44 2.20 43.18 0.09 5.53 16 4 H 0.12 2.61 7.58 -2.39 -0.02 2.59 16 5 N -0.68 -17.45 5.02 -452.55 -2.27 -19.72 16 6 C 0.52 16.49 7.69 87.27 0.67 17.16 16 7 O -0.52 -18.37 12.84 -3.26 -0.04 -18.41 16 8 C 0.50 17.90 7.73 87.27 0.67 18.58 16 9 O -0.55 -20.45 15.93 -3.23 -0.05 -20.50 16 10 N -0.57 -21.50 2.97 -819.63 -2.43 -23.93 16 11 C 0.08 3.31 6.01 86.51 0.52 3.83 16 12 C -0.11 -5.34 5.17 30.82 0.16 -5.18 16 13 C 0.04 2.09 2.06 -11.51 -0.02 2.06 16 14 C -0.53 -29.19 8.56 25.60 0.22 -28.97 16 15 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.77 5.30 84.65 0.45 1.22 16 17 N -0.91 -52.14 11.30 21.45 0.24 -51.90 16 18 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 22 C -0.11 -4.63 5.30 30.67 0.16 -4.46 16 23 C 0.11 4.02 6.44 86.36 0.56 4.58 16 24 C 0.08 1.19 3.23 30.97 0.10 1.29 16 25 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 26 C -0.15 -1.60 6.28 31.58 0.20 -1.40 16 27 C -0.15 -1.35 7.15 31.89 0.23 -1.12 16 28 C 0.04 0.46 7.72 72.66 0.56 1.02 16 29 O -0.39 -7.17 10.47 -148.98 -1.56 -8.73 16 30 H 0.25 2.93 7.80 -4.42 -0.03 2.90 16 31 H 0.42 10.37 7.96 -92.71 -0.74 9.63 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.13 5.12 4.30 -48.56 -0.21 4.92 16 34 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 4.15 6.03 -2.38 -0.01 4.13 16 36 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 37 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.09 3.18 7.01 -2.39 -0.02 3.17 16 41 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.96 7.25 -2.38 -0.02 0.95 16 44 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -67.13 382.58 2.31 -64.82 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.05 Total: 25.44 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 6.36 Total: 7.39 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.46 Total: -95.55 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -1.65 Total: -47.64 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.13 2.31 -64.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323528628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.825 kcal (2) G-P(sol) polarization free energy of solvation -67.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds