Wall clock time and date at job start Tue Mar 31 2020 17:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47219 * 309.30576 * 3 2 1 5 5 C 1.37102 * 119.99864 * 95.67483 * 4 3 2 6 6 H 1.08001 * 119.99843 * 163.05618 * 5 4 3 7 7 C 1.38944 * 120.00171 * 343.05362 * 5 4 3 8 8 N 1.31417 * 120.00194 * 338.60085 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 158.87465 * 7 5 4 10 10 H 1.48499 * 109.47264 * 90.00095 * 9 7 5 11 11 H 1.48502 * 109.47004 * 210.00248 * 9 7 5 12 12 H 1.48495 * 109.47317 * 329.99863 * 9 7 5 13 13 C 1.34771 * 119.99830 * 275.67412 * 4 3 2 14 14 O 1.21295 * 119.99881 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00346 * 0.02562 * 13 4 3 16 16 H 1.08997 * 110.36267 * 317.66432 * 15 13 4 17 17 C 1.54388 * 110.40792 * 79.99650 * 15 13 4 18 18 H 1.08999 * 117.61764 * 234.00802 * 17 15 13 19 19 C 1.53009 * 118.12079 * 29.57726 * 17 15 13 20 20 C 1.54283 * 104.95891 * 94.91949 * 17 15 13 21 21 H 1.09001 * 121.81796 * 137.82499 * 20 17 15 22 22 C 1.54387 * 104.95996 * 0.02562 * 20 17 15 23 23 N 1.48140 * 104.61705 * 23.86847 * 22 20 17 24 24 C 1.34774 * 127.83812 * 140.41745 * 23 22 20 25 25 O 1.21518 * 120.00058 * 179.97438 * 24 23 22 26 26 O 1.34634 * 120.00224 * 359.97438 * 24 23 22 27 27 C 1.45206 * 117.00127 * 180.02562 * 26 24 23 28 28 C 1.52993 * 109.47442 * 59.99656 * 27 26 24 29 29 C 1.52992 * 109.46870 * 179.97438 * 27 26 24 30 30 C 1.53003 * 109.46739 * 299.99776 * 27 26 24 31 31 H 4.40646 * 5.51341 * 179.97438 * 4 1 2 32 32 H 1.08993 * 109.47080 * 189.30173 * 3 2 1 33 33 H 1.09006 * 109.46922 * 69.30244 * 3 2 1 34 34 H 0.97000 * 120.00400 * 180.02562 * 8 7 5 35 35 H 1.08999 * 117.44140 * 199.18790 * 19 17 15 36 36 H 1.08996 * 117.44191 * 343.89545 * 19 17 15 37 37 H 1.09006 * 110.40394 * 142.64937 * 22 20 17 38 38 H 1.08998 * 110.40625 * 264.95999 * 22 20 17 39 39 H 1.09000 * 109.47234 * 59.99705 * 28 27 26 40 40 H 1.08993 * 109.47724 * 180.02562 * 28 27 26 41 41 H 1.09003 * 109.47179 * 300.00457 * 28 27 26 42 42 H 1.09004 * 109.47457 * 60.00091 * 29 27 26 43 43 H 1.09004 * 109.47159 * 179.97438 * 29 27 26 44 44 H 1.08993 * 109.47572 * 299.99551 * 29 27 26 45 45 H 1.09003 * 109.47010 * 60.00077 * 30 27 26 46 46 H 1.09001 * 109.47179 * 180.02562 * 30 27 26 47 47 H 1.09007 * 109.46920 * 300.00075 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8741 1.0688 5 6 3.4746 -2.1728 0.7901 6 1 4.0807 -2.7336 1.4861 7 6 3.0390 -2.7674 -0.3877 8 7 1.9947 -2.2828 -1.0214 9 14 3.9332 -4.2605 -1.0663 10 1 3.3262 -5.4963 -0.5099 11 1 3.8183 -4.2757 -2.5468 12 1 5.3661 -4.1964 -0.6819 13 6 3.2504 -0.4021 2.3258 14 8 3.6546 -1.1265 3.2108 15 6 2.8764 1.0252 2.6323 16 1 3.2446 1.6899 1.8508 17 6 1.3454 1.1613 2.7772 18 1 0.8442 1.9095 2.1631 19 6 0.5584 -0.0494 3.2833 20 6 1.0762 1.0388 4.2915 21 1 0.3639 1.6863 4.8028 22 6 2.4683 0.8401 4.9288 23 7 3.4140 1.4292 3.9525 24 6 4.5140 2.1650 4.2076 25 8 5.1937 2.5799 3.2897 26 8 4.8599 2.4403 5.4793 27 6 6.0563 3.2384 5.6790 28 6 5.8831 4.5968 4.9968 29 6 6.2864 3.4463 7.1772 30 6 7.2599 2.5134 5.0735 31 1 -1.0499 0.0000 0.0003 32 1 3.0089 1.0149 0.1661 33 1 3.0095 -0.3624 -0.9614 34 1 1.6904 -2.6982 -1.8435 35 1 -0.5134 -0.0700 3.0860 36 1 1.0581 -1.0178 3.2622 37 1 2.5287 1.3664 5.8816 38 1 2.6746 -0.2211 5.0680 39 1 5.0256 5.1133 5.4282 40 1 6.7813 5.1958 5.1464 41 1 5.7189 4.4491 3.9294 42 1 6.4097 2.4786 7.6637 43 1 7.1848 4.0451 7.3272 44 1 5.4289 3.9630 7.6083 45 1 7.0957 2.3656 4.0060 46 1 8.1582 3.1122 5.2238 47 1 7.3833 1.5455 5.5595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329047147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:11 Heat of formation + Delta-G solvation = 11.068721 kcal Electronic energy + Delta-G solvation = -30818.378556 eV Core-core repulsion = 26777.830709 eV Total energy + Delta-G solvation = -4040.547847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.80723 -39.76657 -37.54610 -36.48677 -35.12640 -34.08513 -32.87877 -32.14173 -31.23293 -28.75760 -27.42959 -27.33171 -26.60485 -26.07065 -24.55399 -22.03322 -21.44314 -20.36198 -19.37124 -18.56981 -17.97821 -17.53610 -16.60507 -16.43364 -16.29820 -15.77596 -15.40231 -14.79831 -14.68423 -14.25071 -14.11443 -14.04724 -13.76530 -13.39025 -12.94749 -12.63546 -12.52289 -12.28178 -12.17854 -12.04807 -11.93330 -11.87113 -11.69785 -11.65676 -11.47015 -11.35665 -11.14712 -11.06213 -10.98058 -10.54997 -10.31688 -10.25569 -10.11361 -9.94410 -9.54461 -9.28263 -9.24539 -9.08103 -8.82784 -7.96082 -7.89194 -6.36383 -3.88092 2.24093 3.12750 3.13890 3.24358 3.30825 3.62930 3.73192 3.86163 4.07324 4.16422 4.19306 4.73588 4.76048 4.81668 4.84633 4.90673 4.92105 5.03227 5.21293 5.35667 5.42379 5.45894 5.50036 5.53013 5.63620 5.65701 5.73416 5.75147 5.78444 5.88807 5.95160 5.96910 6.18704 6.23219 6.24301 6.31202 6.35991 6.40628 6.45695 6.59009 6.66955 6.75563 7.03017 7.53084 7.83276 8.01309 8.38829 8.62359 8.83814 9.09444 9.31365 9.85565 10.63543 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003968 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.224611 B = 7055.541124 C = 7962.104040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.104 4.104 3 C 0.227 3.773 4 N -0.428 5.428 5 C -0.313 4.313 6 H 0.103 0.897 7 C 0.034 3.966 8 N -0.858 5.858 9 Si 0.919 3.081 10 H -0.278 1.278 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.447 3.553 14 O -0.575 6.575 15 C 0.165 3.835 16 H 0.103 0.897 17 C -0.146 4.146 18 H 0.122 0.878 19 C -0.121 4.121 20 C -0.187 4.187 21 H 0.120 0.880 22 C 0.133 3.867 23 N -0.582 5.582 24 C 0.678 3.322 25 O -0.573 6.573 26 O -0.361 6.361 27 C 0.135 3.865 28 C -0.182 4.182 29 C -0.139 4.139 30 C -0.184 4.184 31 H 0.197 0.803 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.269 0.731 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.089 0.911 46 H 0.067 0.933 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.227 11.620 9.206 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.106 4.106 3 C 0.104 3.896 4 N -0.146 5.146 5 C -0.441 4.441 6 H 0.121 0.879 7 C -0.170 4.170 8 N -0.496 5.496 9 Si 0.745 3.255 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.234 3.766 14 O -0.459 6.459 15 C 0.059 3.941 16 H 0.121 0.879 17 C -0.166 4.166 18 H 0.140 0.860 19 C -0.158 4.158 20 C -0.206 4.206 21 H 0.138 0.862 22 C 0.011 3.989 23 N -0.321 5.321 24 C 0.434 3.566 25 O -0.463 6.463 26 O -0.276 6.276 27 C 0.099 3.901 28 C -0.239 4.239 29 C -0.196 4.196 30 C -0.241 4.241 31 H 0.214 0.786 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.763 11.446 9.255 14.740 hybrid contribution 0.020 -0.710 -0.671 0.977 sum 0.783 10.736 8.584 13.768 Atomic orbital electron populations 1.24116 0.95154 1.05202 1.03348 1.22940 0.94022 0.96003 0.97606 1.18309 0.84698 0.92059 0.94527 1.43619 1.55295 1.10995 1.04739 1.19628 1.30566 0.88373 1.05507 0.87880 1.25258 0.95135 0.99043 0.97591 1.70084 1.19879 1.41581 1.18033 0.86051 0.80259 0.81254 0.77888 1.20415 1.20797 1.19414 1.19941 0.85018 0.88496 0.83098 1.90511 1.51090 1.59297 1.45025 1.21206 0.91872 0.96311 0.84711 0.87878 1.23310 0.93027 1.03416 0.96822 0.85992 1.23682 0.99527 0.94275 0.98335 1.24366 0.98584 1.05568 0.92099 0.86174 1.21892 0.85466 1.00303 0.91265 1.47469 1.24240 1.51887 1.08466 1.17230 0.79924 0.77828 0.81632 1.90873 1.52834 1.57213 1.45345 1.86290 1.45555 1.68397 1.27377 1.22015 0.82071 0.89882 0.96180 1.22513 1.02119 0.95340 1.03978 1.21836 1.02341 1.02851 0.92562 1.22517 0.96600 1.00510 1.04475 0.78631 0.92187 0.87116 0.92097 0.87992 0.87520 0.90191 0.88880 0.92361 0.91389 0.89267 0.91479 0.90348 0.91637 0.89198 0.91432 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.89 18.70 29.55 0.55 -4.34 16 2 C -0.10 -2.17 9.51 -37.12 -0.35 -2.52 16 3 C 0.23 4.94 4.91 -6.83 -0.03 4.91 16 4 N -0.43 -10.54 2.60 -117.93 -0.31 -10.85 16 5 C -0.31 -8.41 9.34 -14.93 -0.14 -8.55 16 6 H 0.10 2.95 7.37 -52.49 -0.39 2.56 16 7 C 0.03 0.87 4.88 -17.47 -0.09 0.79 16 8 N -0.86 -21.66 9.45 55.50 0.52 -21.13 16 9 Si 0.92 20.17 29.60 -169.99 -5.03 15.14 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 C 0.45 10.66 5.22 -10.99 -0.06 10.60 16 14 O -0.58 -15.42 14.41 5.54 0.08 -15.34 16 15 C 0.16 3.25 2.58 -67.44 -0.17 3.07 16 16 H 0.10 2.03 6.27 -51.93 -0.33 1.70 16 17 C -0.15 -2.41 4.69 -89.22 -0.42 -2.83 16 18 H 0.12 1.82 8.14 -51.93 -0.42 1.40 16 19 C -0.12 -2.00 9.28 -24.49 -0.23 -2.23 16 20 C -0.19 -2.75 7.30 -86.98 -0.64 -3.38 16 21 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 22 C 0.13 2.21 6.43 -2.41 -0.02 2.19 16 23 N -0.58 -11.02 2.78 -168.89 -0.47 -11.49 16 24 C 0.68 12.93 8.01 54.05 0.43 13.36 16 25 O -0.57 -11.78 12.15 -19.29 -0.23 -12.01 16 26 O -0.36 -5.95 9.41 -40.31 -0.38 -6.33 16 27 C 0.14 1.79 1.13 -90.63 -0.10 1.69 16 28 C -0.18 -2.23 8.37 37.15 0.31 -1.92 16 29 C -0.14 -1.35 8.85 37.15 0.33 -1.02 16 30 C -0.18 -2.50 8.37 37.16 0.31 -2.19 16 31 H 0.20 3.01 7.80 -54.10 -0.42 2.59 16 32 H 0.06 1.15 6.26 -51.93 -0.32 0.82 16 33 H 0.11 2.55 6.41 -51.93 -0.33 2.22 16 34 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.11 2.20 6.90 -51.93 -0.36 1.84 16 37 H 0.08 1.14 7.87 -51.93 -0.41 0.73 16 38 H 0.09 1.78 6.76 -51.93 -0.35 1.43 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.51 5.88 -51.93 -0.31 1.20 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -30.87 376.44 -7.33 -38.21 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.88 Total: 10.49 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -0.30 Total: 7.64 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.25 Total: -43.47 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.53 Total: -33.68 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.87 -7.33 -38.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329047147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.274 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds