Wall clock time and date at job start Tue Mar 31 2020 17:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47219 * 309.30576 * 3 2 1 5 5 C 1.37102 * 119.99864 * 95.67483 * 4 3 2 6 6 H 1.08001 * 119.99843 * 163.05618 * 5 4 3 7 7 C 1.38944 * 120.00171 * 343.05362 * 5 4 3 8 8 N 1.31417 * 120.00194 * 338.60085 * 7 5 4 9 9 Si 1.86801 * 119.99973 * 158.87465 * 7 5 4 10 10 H 1.48499 * 109.47264 * 90.00095 * 9 7 5 11 11 H 1.48502 * 109.47004 * 210.00248 * 9 7 5 12 12 H 1.48495 * 109.47317 * 329.99863 * 9 7 5 13 13 C 1.34771 * 119.99830 * 275.67412 * 4 3 2 14 14 O 1.21295 * 119.99881 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00346 * 0.02562 * 13 4 3 16 16 H 1.08997 * 110.36267 * 317.66432 * 15 13 4 17 17 C 1.54388 * 110.40792 * 79.99650 * 15 13 4 18 18 H 1.08999 * 117.61764 * 234.00802 * 17 15 13 19 19 C 1.53009 * 118.12079 * 29.57726 * 17 15 13 20 20 C 1.54283 * 104.95891 * 94.91949 * 17 15 13 21 21 H 1.09001 * 121.81796 * 137.82499 * 20 17 15 22 22 C 1.54387 * 104.95996 * 0.02562 * 20 17 15 23 23 N 1.48140 * 104.61705 * 23.86847 * 22 20 17 24 24 C 1.34774 * 127.83812 * 140.41745 * 23 22 20 25 25 O 1.21518 * 120.00058 * 179.97438 * 24 23 22 26 26 O 1.34634 * 120.00224 * 359.97438 * 24 23 22 27 27 C 1.45206 * 117.00127 * 180.02562 * 26 24 23 28 28 C 1.52993 * 109.47442 * 59.99656 * 27 26 24 29 29 C 1.52992 * 109.46870 * 179.97438 * 27 26 24 30 30 C 1.53003 * 109.46739 * 299.99776 * 27 26 24 31 31 H 4.40646 * 5.51341 * 179.97438 * 4 1 2 32 32 H 1.08993 * 109.47080 * 189.30173 * 3 2 1 33 33 H 1.09006 * 109.46922 * 69.30244 * 3 2 1 34 34 H 0.97000 * 120.00400 * 180.02562 * 8 7 5 35 35 H 1.08999 * 117.44140 * 199.18790 * 19 17 15 36 36 H 1.08996 * 117.44191 * 343.89545 * 19 17 15 37 37 H 1.09006 * 110.40394 * 142.64937 * 22 20 17 38 38 H 1.08998 * 110.40625 * 264.95999 * 22 20 17 39 39 H 1.09000 * 109.47234 * 59.99705 * 28 27 26 40 40 H 1.08993 * 109.47724 * 180.02562 * 28 27 26 41 41 H 1.09003 * 109.47179 * 300.00457 * 28 27 26 42 42 H 1.09004 * 109.47457 * 60.00091 * 29 27 26 43 43 H 1.09004 * 109.47159 * 179.97438 * 29 27 26 44 44 H 1.08993 * 109.47572 * 299.99551 * 29 27 26 45 45 H 1.09003 * 109.47010 * 60.00077 * 30 27 26 46 46 H 1.09001 * 109.47179 * 180.02562 * 30 27 26 47 47 H 1.09007 * 109.46920 * 300.00075 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8741 1.0688 5 6 3.4746 -2.1728 0.7901 6 1 4.0807 -2.7336 1.4861 7 6 3.0390 -2.7674 -0.3877 8 7 1.9947 -2.2828 -1.0214 9 14 3.9332 -4.2605 -1.0663 10 1 3.3262 -5.4963 -0.5099 11 1 3.8183 -4.2757 -2.5468 12 1 5.3661 -4.1964 -0.6819 13 6 3.2504 -0.4021 2.3258 14 8 3.6546 -1.1265 3.2108 15 6 2.8764 1.0252 2.6323 16 1 3.2446 1.6899 1.8508 17 6 1.3454 1.1613 2.7772 18 1 0.8442 1.9095 2.1631 19 6 0.5584 -0.0494 3.2833 20 6 1.0762 1.0388 4.2915 21 1 0.3639 1.6863 4.8028 22 6 2.4683 0.8401 4.9288 23 7 3.4140 1.4292 3.9525 24 6 4.5140 2.1650 4.2076 25 8 5.1937 2.5799 3.2897 26 8 4.8599 2.4403 5.4793 27 6 6.0563 3.2384 5.6790 28 6 5.8831 4.5968 4.9968 29 6 6.2864 3.4463 7.1772 30 6 7.2599 2.5134 5.0735 31 1 -1.0499 0.0000 0.0003 32 1 3.0089 1.0149 0.1661 33 1 3.0095 -0.3624 -0.9614 34 1 1.6904 -2.6982 -1.8435 35 1 -0.5134 -0.0700 3.0860 36 1 1.0581 -1.0178 3.2622 37 1 2.5287 1.3664 5.8816 38 1 2.6746 -0.2211 5.0680 39 1 5.0256 5.1133 5.4282 40 1 6.7813 5.1958 5.1464 41 1 5.7189 4.4491 3.9294 42 1 6.4097 2.4786 7.6637 43 1 7.1848 4.0451 7.3272 44 1 5.4289 3.9630 7.6083 45 1 7.0957 2.3656 4.0060 46 1 8.1582 3.1122 5.2238 47 1 7.3833 1.5455 5.5595 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329047147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:10 Heat of formation + Delta-G solvation = -6.597372 kcal Electronic energy + Delta-G solvation = -30819.144615 eV Core-core repulsion = 26777.830709 eV Total energy + Delta-G solvation = -4041.313907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25277 -41.20108 -39.20359 -37.82334 -37.01096 -35.33112 -34.20189 -33.99198 -32.95479 -30.30968 -28.37572 -28.30852 -28.25318 -27.56406 -26.40572 -23.30400 -22.97522 -21.69408 -20.66716 -20.13768 -19.67929 -19.04540 -18.31273 -18.02722 -17.61267 -17.23217 -16.80452 -16.51610 -16.18219 -15.80931 -15.58804 -15.40115 -15.03491 -14.82042 -14.42782 -14.18537 -14.00073 -13.62411 -13.53453 -13.36779 -13.31032 -13.12979 -12.88592 -12.86305 -12.81790 -12.71965 -12.62561 -12.51287 -12.38078 -12.28016 -12.13914 -11.55693 -11.41008 -11.27429 -11.17142 -10.88378 -10.77725 -10.71068 -10.44281 -9.82858 -9.64192 -8.32276 -5.92220 0.89434 1.33527 1.41266 1.52425 1.68206 1.86398 2.17861 2.37004 2.41522 2.55937 2.89502 3.03498 3.16753 3.49779 3.60902 3.75423 3.79882 3.83959 3.86465 3.94702 4.05612 4.13792 4.19698 4.36138 4.48702 4.61073 4.64791 4.65939 4.72894 4.75697 4.83160 4.86654 4.87972 4.91989 4.95273 4.97889 5.13105 5.13516 5.27534 5.28292 5.34937 5.43456 5.45847 5.52756 6.01833 6.38381 6.46944 7.12225 7.19024 7.28808 7.39415 7.95455 8.65011 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003968 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.224611 B = 7055.541124 C = 7962.104040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.147 4.147 3 C 0.231 3.769 4 N -0.438 5.438 5 C -0.352 4.352 6 H 0.070 0.930 7 C 0.011 3.989 8 N -0.861 5.861 9 Si 0.977 3.023 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.277 1.277 13 C 0.440 3.560 14 O -0.619 6.619 15 C 0.168 3.832 16 H 0.099 0.901 17 C -0.148 4.148 18 H 0.148 0.852 19 C -0.129 4.129 20 C -0.154 4.154 21 H 0.167 0.833 22 C 0.127 3.873 23 N -0.589 5.589 24 C 0.672 3.328 25 O -0.595 6.595 26 O -0.362 6.362 27 C 0.120 3.880 28 C -0.176 4.176 29 C -0.131 4.131 30 C -0.182 4.182 31 H 0.233 0.767 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.273 0.727 35 H 0.131 0.869 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.099 0.901 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 13.622 10.009 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.149 4.149 3 C 0.109 3.891 4 N -0.156 5.156 5 C -0.479 4.479 6 H 0.088 0.912 7 C -0.193 4.193 8 N -0.497 5.497 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.202 1.202 13 C 0.229 3.771 14 O -0.506 6.506 15 C 0.062 3.938 16 H 0.117 0.883 17 C -0.168 4.168 18 H 0.166 0.834 19 C -0.166 4.166 20 C -0.173 4.173 21 H 0.184 0.816 22 C 0.006 3.994 23 N -0.327 5.327 24 C 0.428 3.572 25 O -0.487 6.487 26 O -0.277 6.277 27 C 0.084 3.916 28 C -0.233 4.233 29 C -0.188 4.188 30 C -0.239 4.239 31 H 0.250 0.750 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.118 0.882 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.879 13.471 10.050 16.830 hybrid contribution 0.588 -1.360 -0.898 1.732 sum -0.291 12.112 9.153 15.184 Atomic orbital electron populations 1.24919 0.95879 1.02846 1.00963 1.22853 0.94121 0.98131 0.99752 1.18239 0.86041 0.92217 0.92641 1.43770 1.55329 1.10688 1.05775 1.19452 1.32209 0.89894 1.06374 0.91244 1.25842 0.95373 1.01182 0.96929 1.70154 1.19683 1.42020 1.17838 0.85196 0.78590 0.78177 0.77891 1.20363 1.19023 1.20248 1.20717 0.83818 0.90162 0.82422 1.90467 1.52854 1.61032 1.46246 1.21084 0.94494 0.92894 0.85350 0.88284 1.23327 0.90505 1.04064 0.98875 0.83439 1.23580 1.00508 0.92220 1.00287 1.24525 0.97758 1.04179 0.90790 0.81562 1.21977 0.86380 0.98646 0.92418 1.47652 1.24685 1.51801 1.08605 1.17455 0.79651 0.77754 0.82299 1.90863 1.53396 1.58123 1.46299 1.86308 1.46946 1.68847 1.25592 1.22537 0.80520 0.89761 0.98767 1.22450 1.03981 0.95164 1.01741 1.21869 1.04170 1.03432 0.89356 1.22490 0.98534 1.00998 1.01877 0.74998 0.90302 0.89099 0.91654 0.85051 0.92444 0.87370 0.92301 0.91312 0.88574 0.92456 0.91737 0.87415 0.90557 0.92935 0.88228 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.03 18.70 74.32 1.39 -6.64 16 2 C -0.15 -6.03 9.51 31.13 0.30 -5.74 16 3 C 0.23 10.34 4.91 84.57 0.42 10.75 16 4 N -0.44 -22.71 2.60 -645.41 -1.68 -24.39 16 5 C -0.35 -20.01 9.34 84.04 0.78 -19.22 16 6 H 0.07 4.31 7.37 -2.91 -0.02 4.29 16 7 C 0.01 0.59 4.88 84.92 0.41 1.00 16 8 N -0.86 -43.66 9.45 21.66 0.20 -43.46 16 9 Si 0.98 42.28 29.60 68.60 2.03 44.31 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 13 C 0.44 22.22 5.22 87.66 0.46 22.67 16 14 O -0.62 -35.75 14.41 -3.08 -0.04 -35.79 16 15 C 0.17 6.77 2.58 44.40 0.11 6.89 16 16 H 0.10 4.01 6.27 -2.39 -0.01 4.00 16 17 C -0.15 -4.68 4.69 -9.88 -0.05 -4.73 16 18 H 0.15 3.94 8.14 -2.39 -0.02 3.92 16 19 C -0.13 -4.12 9.28 32.05 0.30 -3.83 16 20 C -0.15 -4.15 7.30 -8.44 -0.06 -4.21 16 21 H 0.17 3.06 8.14 -2.39 -0.02 3.04 16 22 C 0.13 4.20 6.43 86.53 0.56 4.76 16 23 N -0.59 -22.69 2.78 -918.65 -2.55 -25.24 16 24 C 0.67 26.21 8.01 129.79 1.04 27.25 16 25 O -0.60 -25.51 12.15 19.78 0.24 -25.27 16 26 O -0.36 -11.85 9.41 -55.43 -0.52 -12.37 16 27 C 0.12 3.04 1.13 -10.80 -0.01 3.03 16 28 C -0.18 -4.04 8.37 71.98 0.60 -3.44 16 29 C -0.13 -2.19 8.85 71.98 0.64 -1.55 16 30 C -0.18 -4.95 8.37 71.98 0.60 -4.35 16 31 H 0.23 6.13 7.80 -4.42 -0.03 6.10 16 32 H 0.08 3.11 6.26 -2.39 -0.01 3.10 16 33 H 0.09 4.35 6.41 -2.38 -0.02 4.33 16 34 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 35 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 36 H 0.06 2.46 6.90 -2.39 -0.02 2.44 16 37 H 0.11 2.91 7.87 -2.38 -0.02 2.89 16 38 H 0.06 2.36 6.76 -2.39 -0.02 2.34 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.71 5.88 -2.39 -0.01 1.70 16 42 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.05 1.84 5.88 -2.39 -0.01 1.83 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -73.09 376.44 6.14 -66.94 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.98 Total: 32.63 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 7.49 Total: 22.64 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -4.03 Total: -93.09 kcal Atomic # 8 Polarization: -73.10 SS G_CDS: -0.33 Total: -73.43 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -73.09 6.14 -66.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329047147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.347 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds