Wall clock time and date at job start Tue Mar 31 2020 17:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 H 1.09005 * 109.46598 * 55.00550 * 3 2 1 5 5 C 1.52997 * 109.47531 * 295.00729 * 3 2 1 6 6 C 1.52998 * 109.47174 * 175.00445 * 3 2 1 7 7 H 1.09006 * 109.46941 * 305.00396 * 6 3 2 8 8 C 1.53000 * 109.47019 * 65.00209 * 6 3 2 9 9 N 1.46504 * 109.47148 * 185.00691 * 6 3 2 10 10 C 1.34777 * 119.99872 * 155.00065 * 9 6 3 11 11 O 1.21358 * 119.99918 * 359.97438 * 10 9 6 12 12 C 1.49319 * 119.99666 * 179.71906 * 10 9 6 13 13 O 1.21388 * 119.99905 * 0.27957 * 12 10 9 14 14 N 1.34778 * 120.00009 * 180.27486 * 12 10 9 15 15 C 1.39743 * 119.99826 * 175.50033 * 14 12 10 16 16 C 1.38994 * 120.00204 * 214.86485 * 15 14 12 17 17 C 1.37966 * 119.99094 * 179.78979 * 16 15 14 18 18 C 1.38940 * 120.00387 * 0.49142 * 17 16 15 19 19 O 1.35765 * 119.99051 * 179.72534 * 18 17 16 20 20 C 1.34804 * 116.99560 * 185.36779 * 19 18 17 21 21 H 1.07997 * 120.00366 * 354.95577 * 20 19 18 22 22 C 1.38654 * 119.99457 * 174.96139 * 20 19 18 23 23 N 1.31557 * 120.00439 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99614 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47593 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47252 * 120.00218 * 24 22 20 27 27 H 1.48502 * 109.47395 * 239.99743 * 24 22 20 28 28 C 1.38931 * 120.01942 * 359.73775 * 18 17 16 29 29 C 1.37969 * 119.99989 * 0.02741 * 28 18 17 30 30 H 1.08996 * 109.47361 * 59.99282 * 1 2 3 31 31 H 1.09000 * 109.47319 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46544 * 299.99342 * 1 2 3 33 33 H 1.09003 * 109.46544 * 240.00658 * 2 1 3 34 34 H 1.08996 * 109.47361 * 120.00718 * 2 1 3 35 35 H 1.09007 * 109.47277 * 59.99774 * 5 3 2 36 36 H 1.09000 * 109.47192 * 179.97438 * 5 3 2 37 37 H 1.08999 * 109.46913 * 300.00251 * 5 3 2 38 38 H 1.09001 * 109.46964 * 179.97438 * 8 6 3 39 39 H 1.08994 * 109.47290 * 299.99838 * 8 6 3 40 40 H 1.09000 * 109.46692 * 60.00153 * 8 6 3 41 41 H 0.97005 * 119.99904 * 334.99454 * 9 6 3 42 42 H 0.96994 * 119.99818 * 355.49756 * 14 12 10 43 43 H 1.08004 * 120.00515 * 359.97438 * 16 15 14 44 44 H 1.07998 * 119.99795 * 180.22778 * 17 16 15 45 45 H 0.97004 * 120.00280 * 180.02562 * 23 22 20 46 46 H 1.07997 * 120.00472 * 180.02562 * 28 18 17 47 47 H 1.08008 * 120.00164 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5649 1.4443 0.1256 7 1 3.8571 0.8799 1.0112 8 6 4.1797 0.7976 -1.1172 9 7 4.0433 2.8238 0.2459 10 6 5.2191 3.0787 0.8534 11 8 5.8812 2.1655 1.3012 12 6 5.7097 4.4841 0.9703 13 8 5.0472 5.3975 0.5228 14 7 6.8881 4.7386 1.5729 15 6 7.3922 6.0416 1.5996 16 6 8.7627 6.2585 1.5181 17 6 9.2599 7.5453 1.5401 18 6 8.3914 8.6238 1.6539 19 8 8.8813 9.8897 1.6811 20 6 7.9978 10.8830 1.9045 21 1 6.9427 10.6626 1.9708 22 6 8.4439 12.1879 2.0491 23 7 9.7292 12.4564 1.9687 24 14 7.2197 13.5645 2.3580 25 1 5.8455 13.0036 2.4056 26 1 7.5304 14.2221 3.6528 27 1 7.3098 14.5624 1.2620 28 6 7.0217 8.4072 1.7401 29 6 6.5237 7.1208 1.7133 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 0.5488 2.1254 -1.3967 36 1 1.9982 3.1544 -1.3070 37 1 2.0697 1.5876 -2.1491 38 1 5.2661 0.7993 -1.0279 39 1 3.8238 -0.2287 -1.2066 40 1 3.8874 1.3621 -2.0027 41 1 3.5139 3.5537 -0.1119 42 1 7.3862 4.0172 1.9881 43 1 9.4382 5.4199 1.4347 44 1 10.3245 7.7140 1.4731 45 1 10.0413 13.3693 2.0703 46 1 6.3469 9.2457 1.8281 47 1 5.4590 6.9524 1.7807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329072940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:32 Heat of formation + Delta-G solvation = -101.433122 kcal Electronic energy + Delta-G solvation = -27799.069856 eV Core-core repulsion = 23753.643563 eV Total energy + Delta-G solvation = -4045.426293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12895 -40.91390 -40.05847 -38.62574 -38.21860 -35.75771 -34.87507 -34.17254 -31.93187 -31.64216 -29.93752 -29.54532 -27.46894 -26.56246 -25.84270 -24.07534 -23.50848 -22.47483 -21.33430 -20.61652 -20.04548 -19.54111 -18.83348 -18.28604 -17.52982 -17.07322 -16.72299 -16.31470 -16.25585 -16.13175 -15.64307 -15.52563 -15.32475 -15.16265 -15.07944 -14.68826 -14.53966 -14.19597 -13.95271 -13.58979 -13.40484 -13.27468 -13.18762 -13.10361 -12.93935 -12.76580 -12.72265 -12.65319 -12.42522 -12.10620 -11.93499 -11.68126 -11.51204 -11.46774 -11.35920 -11.12799 -10.71948 -10.58632 -10.32568 -9.88325 -8.70737 -8.47918 -6.14584 0.05300 0.50444 0.69257 1.23873 1.36045 1.43508 1.53877 2.06281 2.17420 2.55766 2.78874 3.12366 3.32986 3.48402 3.65053 3.85344 3.98553 4.05629 4.07918 4.31691 4.33748 4.44592 4.49765 4.57224 4.63895 4.64831 4.67144 4.74078 4.84664 4.93047 5.04600 5.06532 5.06780 5.12911 5.19881 5.22814 5.26121 5.27688 5.29049 5.35684 5.49177 5.53087 5.56885 5.66021 5.87604 6.01031 6.09421 6.30489 6.69648 6.88075 6.96951 7.74899 8.74778 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.001981 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.529765 B =14133.974308 C =15141.784021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.094 4.094 4 H 0.075 0.925 5 C -0.157 4.157 6 C 0.142 3.858 7 H 0.084 0.916 8 C -0.165 4.165 9 N -0.684 5.684 10 C 0.520 3.480 11 O -0.536 6.536 12 C 0.498 3.502 13 O -0.530 6.530 14 N -0.619 5.619 15 C 0.049 3.951 16 C -0.071 4.071 17 C -0.179 4.179 18 C 0.113 3.887 19 O -0.224 6.224 20 C -0.413 4.413 21 H 0.101 0.899 22 C -0.020 4.020 23 N -0.916 5.916 24 Si 1.017 2.983 25 H -0.254 1.254 26 H -0.267 1.267 27 H -0.268 1.268 28 C -0.227 4.227 29 C -0.068 4.068 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.416 0.584 42 H 0.429 0.571 43 H 0.164 0.836 44 H 0.131 0.869 45 H 0.273 0.727 46 H 0.122 0.878 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.865 -25.840 -4.445 31.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.214 4.214 6 C 0.038 3.962 7 H 0.102 0.898 8 C -0.223 4.223 9 N -0.337 5.337 10 C 0.300 3.700 11 O -0.413 6.413 12 C 0.280 3.720 13 O -0.407 6.407 14 N -0.266 5.266 15 C -0.045 4.045 16 C -0.091 4.091 17 C -0.199 4.199 18 C 0.062 3.938 19 O -0.130 6.130 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.218 4.218 23 N -0.554 5.554 24 Si 0.836 3.164 25 H -0.177 1.177 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.247 4.247 29 C -0.088 4.088 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.255 0.745 42 H 0.268 0.732 43 H 0.182 0.818 44 H 0.149 0.851 45 H 0.082 0.918 46 H 0.140 0.860 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.530 -25.650 -4.484 30.843 hybrid contribution -0.126 1.099 0.228 1.130 sum -16.656 -24.551 -4.256 29.971 Atomic orbital electron populations 1.21816 0.95156 1.02062 1.02067 1.21558 0.96424 0.94429 1.02896 1.21407 0.91842 0.98390 0.99613 0.90630 1.22022 1.02447 1.00068 0.96854 1.21316 0.94661 0.80295 0.99878 0.89793 1.22273 1.00410 1.02191 0.97407 1.45975 1.20052 1.11354 1.56369 1.19695 0.82921 0.87961 0.79468 1.90757 1.56330 1.46065 1.48184 1.20502 0.82450 0.90024 0.79030 1.90773 1.55885 1.46602 1.47423 1.42786 1.21271 1.08797 1.53745 1.17371 0.92683 0.83508 1.10896 1.20781 0.93231 0.96381 0.98685 1.20305 0.99402 0.90297 1.09877 1.19969 0.93129 0.86157 0.94581 1.83939 1.37602 1.11787 1.79722 1.21841 0.90096 0.85858 1.51145 0.88208 1.26546 0.99181 1.00076 0.96029 1.70176 1.15484 1.21524 1.48228 0.84550 0.77162 0.76156 0.78489 1.17700 1.19238 1.19304 1.21102 0.94696 0.97813 1.11119 1.20940 0.99993 0.90695 0.97201 0.92069 0.92201 0.93028 0.90604 0.91686 0.91176 0.93132 0.91274 0.93852 0.89256 0.91154 0.74548 0.73177 0.81823 0.85135 0.91761 0.86022 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 71.98 0.70 -0.38 16 2 C -0.12 -0.85 5.03 30.60 0.15 -0.70 16 3 C -0.09 -0.89 2.32 -10.80 -0.03 -0.91 16 4 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 5 C -0.16 -1.36 8.33 71.98 0.60 -0.76 16 6 C 0.14 1.89 2.35 44.99 0.11 2.00 16 7 H 0.08 1.31 7.58 -2.38 -0.02 1.29 16 8 C -0.16 -2.00 8.75 71.98 0.63 -1.37 16 9 N -0.68 -11.89 5.01 -443.99 -2.22 -14.11 16 10 C 0.52 11.85 7.85 87.23 0.68 12.54 16 11 O -0.54 -13.68 16.14 -3.27 -0.05 -13.74 16 12 C 0.50 13.47 7.73 87.23 0.67 14.15 16 13 O -0.53 -16.94 13.91 -3.37 -0.05 -16.99 16 14 N -0.62 -16.43 5.32 -304.75 -1.62 -18.05 16 15 C 0.05 1.62 6.30 38.24 0.24 1.86 16 16 C -0.07 -2.29 9.96 22.39 0.22 -2.07 16 17 C -0.18 -7.29 9.98 22.37 0.22 -7.06 16 18 C 0.11 5.56 6.65 22.60 0.15 5.71 16 19 O -0.22 -13.34 9.75 -22.65 -0.22 -13.56 16 20 C -0.41 -24.03 9.48 67.92 0.64 -23.39 16 21 H 0.10 5.39 5.19 -2.91 -0.02 5.38 16 22 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 23 N -0.92 -55.72 13.67 21.61 0.30 -55.43 16 24 Si 1.02 42.95 29.55 68.60 2.03 44.98 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 C -0.23 -10.28 9.16 22.37 0.20 -10.08 16 29 C -0.07 -2.64 8.69 22.39 0.19 -2.45 16 30 H 0.06 0.40 6.56 -2.39 -0.02 0.38 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.46 6.81 -2.39 -0.02 0.45 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.07 0.52 6.57 -2.38 -0.02 0.51 16 36 H 0.05 0.50 6.77 -2.39 -0.02 0.49 16 37 H 0.07 0.54 6.34 -2.39 -0.02 0.52 16 38 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.75 6.68 -2.39 -0.02 0.73 16 40 H 0.07 0.78 6.34 -2.39 -0.02 0.76 16 41 H 0.42 6.73 6.65 -92.70 -0.62 6.11 16 42 H 0.43 9.14 8.30 -92.71 -0.77 8.37 16 43 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 44 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 45 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 47 H 0.13 4.93 6.22 -2.91 -0.02 4.91 16 Total: -1.00 -72.27 383.20 3.67 -68.60 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.36 Total: 31.88 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 5.87 Total: -13.58 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -3.55 Total: -87.59 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.32 Total: -44.29 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -72.27 3.67 -68.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329072940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.831 kcal (2) G-P(sol) polarization free energy of solvation -72.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds