Wall clock time and date at job start Tue Mar 31 2020 17:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47516 * 2 1 4 4 H 1.09002 * 109.47199 * 55.00108 * 3 2 1 5 5 C 1.53005 * 109.47333 * 295.00412 * 3 2 1 6 6 C 1.52997 * 109.47514 * 174.99972 * 3 2 1 7 7 H 1.08999 * 109.47028 * 60.00326 * 6 3 2 8 8 C 1.53002 * 109.47354 * 300.00205 * 6 3 2 9 9 N 1.46504 * 109.47325 * 180.02562 * 6 3 2 10 10 C 1.34775 * 119.99908 * 205.00522 * 9 6 3 11 11 O 1.21368 * 120.00044 * 359.97438 * 10 9 6 12 12 C 1.49314 * 120.00065 * 180.02562 * 10 9 6 13 13 O 1.21392 * 119.99767 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00434 * 179.97438 * 12 10 9 15 15 C 1.39739 * 120.00261 * 175.49513 * 14 12 10 16 16 C 1.38998 * 120.00666 * 214.86642 * 15 14 12 17 17 C 1.37969 * 119.98939 * 179.74146 * 16 15 14 18 18 C 1.38935 * 120.00680 * 0.50984 * 17 16 15 19 19 O 1.35765 * 119.98748 * 179.74524 * 18 17 16 20 20 C 1.34806 * 116.99364 * 185.36351 * 19 18 17 21 21 H 1.07994 * 120.00352 * 354.96283 * 20 19 18 22 22 C 1.38653 * 119.99542 * 174.96631 * 20 19 18 23 23 N 1.31563 * 120.00305 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99856 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47217 * 89.99485 * 24 22 20 26 26 H 1.48499 * 109.46723 * 209.99646 * 24 22 20 27 27 H 1.48497 * 109.47075 * 329.99518 * 24 22 20 28 28 C 1.38933 * 120.01646 * 359.76352 * 18 17 16 29 29 C 1.37964 * 120.00588 * 359.97438 * 28 18 17 30 30 H 1.09005 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46901 * 299.99702 * 1 2 3 32 32 H 1.08994 * 109.47255 * 59.99406 * 1 2 3 33 33 H 1.09005 * 109.47344 * 240.00001 * 2 1 3 34 34 H 1.09002 * 109.47525 * 120.00572 * 2 1 3 35 35 H 1.09002 * 109.46730 * 299.99984 * 5 3 2 36 36 H 1.09003 * 109.46889 * 59.99728 * 5 3 2 37 37 H 1.08995 * 109.47299 * 179.97438 * 5 3 2 38 38 H 1.09005 * 109.46934 * 59.99773 * 8 6 3 39 39 H 1.08999 * 109.47151 * 300.00045 * 8 6 3 40 40 H 1.09003 * 109.47064 * 179.97438 * 8 6 3 41 41 H 0.96997 * 119.99989 * 24.99796 * 9 6 3 42 42 H 0.96995 * 119.99695 * 355.48971 * 14 12 10 43 43 H 1.07997 * 120.00119 * 359.97438 * 16 15 14 44 44 H 1.08003 * 119.99344 * 180.24919 * 17 16 15 45 45 H 0.96999 * 120.00151 * 180.02562 * 23 22 20 46 46 H 1.08001 * 119.99361 * 179.97438 * 28 18 17 47 47 H 1.08003 * 120.00238 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4442 0.1257 7 1 3.9994 0.9053 -0.7161 8 6 3.9697 0.7602 1.4331 9 7 4.0532 2.8255 0.1263 10 6 5.3118 3.0954 -0.2728 11 8 6.0409 2.1941 -0.6324 12 6 5.8098 4.5031 -0.2717 13 8 5.0807 5.4044 0.0884 14 7 7.0686 4.7730 -0.6704 15 6 7.5045 6.0977 -0.7593 16 6 8.3960 6.4706 -1.7584 17 6 8.8220 7.7797 -1.8491 18 6 8.3683 8.7229 -0.9354 19 8 8.7918 10.0099 -1.0219 20 6 8.4030 10.8492 -0.0412 21 1 7.7169 10.5090 0.7203 22 6 8.8838 12.1494 -0.0104 23 7 9.7198 12.5637 -0.9379 24 14 8.3455 13.3122 1.3488 25 1 9.2834 13.2021 2.4948 26 1 8.3498 14.7065 0.8378 27 1 6.9753 12.9525 1.7942 28 6 7.4817 8.3493 0.0669 29 6 7.0511 7.0415 0.1548 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0698 1.5875 -2.1492 36 1 0.5489 2.1253 -1.3968 37 1 1.9982 3.1543 -1.3071 38 1 3.6063 -0.2675 1.4330 39 1 3.5350 1.2992 2.2749 40 1 5.0560 0.7611 1.5224 41 1 3.4706 3.5457 0.4139 42 1 7.6720 4.0477 -0.8955 43 1 8.7521 5.7365 -2.4659 44 1 9.5115 8.0704 -2.6279 45 1 10.0565 13.4732 -0.9161 46 1 7.1296 9.0827 0.7772 47 1 6.3622 6.7510 0.9343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329072941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:35 Heat of formation + Delta-G solvation = -81.662855 kcal Electronic energy + Delta-G solvation = -27807.765715 eV Core-core repulsion = 23763.196725 eV Total energy + Delta-G solvation = -4044.568990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95762 -39.56043 -38.60796 -37.72332 -36.61131 -34.63695 -33.81834 -32.22347 -30.89328 -30.26743 -29.77133 -28.33763 -25.66710 -24.97815 -24.79406 -22.80064 -22.19148 -21.13177 -20.72498 -19.96041 -18.75703 -17.95133 -17.27937 -16.98859 -16.20864 -16.15482 -15.61818 -15.42901 -14.83580 -14.57975 -14.45567 -14.22509 -14.09639 -13.69894 -13.67280 -13.63069 -13.57261 -12.97289 -12.91839 -12.61454 -12.54552 -12.22759 -12.04154 -11.90300 -11.79082 -11.76193 -11.61007 -11.39450 -11.14290 -11.04962 -10.99455 -10.91171 -10.77538 -10.45833 -9.79069 -9.63008 -9.49231 -9.22647 -8.75061 -8.26756 -7.01766 -6.48384 -4.05718 1.26538 2.12212 2.17513 2.38356 3.11300 3.13170 3.17992 3.23273 3.60138 3.94866 4.15291 4.38015 4.38804 4.47958 4.54556 4.79328 4.91124 4.99036 5.05909 5.10523 5.15020 5.21727 5.23128 5.35091 5.47809 5.53618 5.55949 5.61659 5.62529 5.65642 5.67617 5.84789 5.90206 5.98171 6.03589 6.06894 6.10452 6.23809 6.62599 6.72309 6.88604 6.95384 7.04362 7.24045 7.38139 7.44908 7.67970 7.73479 7.96442 8.09137 8.97131 9.65522 10.69203 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.001961 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.876111 B =14278.504045 C =14939.366550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.152 4.152 6 C 0.143 3.857 7 H 0.092 0.908 8 C -0.168 4.168 9 N -0.696 5.696 10 C 0.513 3.487 11 O -0.523 6.523 12 C 0.495 3.505 13 O -0.510 6.510 14 N -0.624 5.624 15 C 0.022 3.978 16 C -0.085 4.085 17 C -0.178 4.178 18 C 0.150 3.850 19 O -0.173 6.173 20 C -0.391 4.391 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.273 1.273 26 H -0.277 1.277 27 H -0.267 1.267 28 C -0.222 4.222 29 C -0.060 4.060 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.271 0.729 46 H 0.132 0.868 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.449 -23.447 2.661 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.119 4.119 4 H 0.097 0.903 5 C -0.209 4.209 6 C 0.040 3.960 7 H 0.110 0.890 8 C -0.226 4.226 9 N -0.350 5.350 10 C 0.294 3.706 11 O -0.399 6.399 12 C 0.276 3.724 13 O -0.385 6.385 14 N -0.269 5.269 15 C -0.070 4.070 16 C -0.105 4.105 17 C -0.197 4.197 18 C 0.095 3.905 19 O -0.076 6.076 20 C -0.467 4.467 21 H 0.111 0.889 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.198 1.198 26 H -0.202 1.202 27 H -0.191 1.191 28 C -0.242 4.242 29 C -0.080 4.080 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.249 0.751 42 H 0.250 0.750 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.150 0.850 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.196 -23.123 2.417 27.240 hybrid contribution -0.265 0.568 0.715 0.951 sum -14.462 -22.555 3.131 26.975 Atomic orbital electron populations 1.21816 0.95499 1.01708 1.02086 1.21607 0.96200 0.95279 1.02606 1.21471 0.93446 0.97542 0.99437 0.90343 1.21911 1.01621 1.00811 0.96603 1.21140 0.93821 0.81602 0.99483 0.88990 1.22264 1.02494 1.00873 0.96927 1.45840 1.13390 1.10335 1.65404 1.20156 0.82903 0.89310 0.78228 1.90752 1.55701 1.47153 1.46254 1.20053 0.82917 0.89077 0.80360 1.90774 1.55934 1.46549 1.45280 1.42842 1.11946 1.07985 1.64134 1.17243 1.05710 0.83232 1.00840 1.20392 0.98279 0.95611 0.96206 1.20002 1.06018 0.91265 1.02454 1.19444 0.92010 0.85842 0.93178 1.83970 1.64535 1.13827 1.45288 1.21358 1.27926 0.91900 1.05563 0.88915 1.25307 0.95992 0.96865 0.98336 1.70039 1.28991 1.18099 1.32347 0.85699 0.79183 0.78961 0.79549 1.19833 1.20232 1.19114 1.21089 1.03686 0.96473 1.02935 1.20837 0.98090 0.92286 0.96778 0.92690 0.92671 0.92374 0.91629 0.91237 0.92468 0.92011 0.92287 0.90984 0.92159 0.91877 0.75101 0.75001 0.86429 0.85838 0.91947 0.85040 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.67 37.15 0.36 -0.35 16 2 C -0.12 -0.59 5.19 -26.74 -0.14 -0.73 16 3 C -0.10 -0.59 2.02 -90.62 -0.18 -0.77 16 4 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.99 8.79 37.16 0.33 -0.66 16 6 C 0.14 1.10 2.16 -67.93 -0.15 0.96 16 7 H 0.09 0.82 7.58 -51.93 -0.39 0.43 16 8 C -0.17 -1.19 9.14 37.16 0.34 -0.85 16 9 N -0.70 -6.65 4.38 -54.28 -0.24 -6.89 16 10 C 0.51 6.36 7.85 -11.65 -0.09 6.27 16 11 O -0.52 -7.25 16.14 5.48 0.09 -7.16 16 12 C 0.49 7.23 7.73 -11.65 -0.09 7.14 16 13 O -0.51 -8.57 13.91 5.46 0.08 -8.50 16 14 N -0.62 -9.17 5.32 -10.27 -0.05 -9.22 16 15 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 16 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 17 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 18 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 19 O -0.17 -4.88 9.75 0.07 0.00 -4.88 16 20 C -0.39 -10.84 9.48 30.89 0.29 -10.55 16 21 H 0.09 2.39 5.19 -52.49 -0.27 2.11 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 23 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 24 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 29 C -0.06 -1.19 8.68 -39.40 -0.34 -1.53 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.31 6.17 -51.93 -0.32 -0.01 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 37 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 38 H 0.07 0.39 6.32 -51.93 -0.33 0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.41 3.65 7.86 -40.82 -0.32 3.33 16 42 H 0.41 5.13 8.30 -40.82 -0.34 4.79 16 43 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 45 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.13 2.91 5.63 -52.49 -0.30 2.61 16 47 H 0.13 2.39 6.22 -52.48 -0.33 2.06 16 LS Contribution 387.57 15.07 5.84 5.84 Total: -1.00 -31.76 387.57 -6.86 -38.62 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.60 Total: 9.07 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.70 Total: -8.07 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.47 Total: -40.31 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.17 Total: -20.54 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.76 -6.86 -38.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329072941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.042 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds