Wall clock time and date at job start Tue Mar 31 2020 17:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47516 * 2 1 4 4 H 1.09002 * 109.47199 * 55.00108 * 3 2 1 5 5 C 1.53005 * 109.47333 * 295.00412 * 3 2 1 6 6 C 1.52997 * 109.47514 * 174.99972 * 3 2 1 7 7 H 1.08999 * 109.47028 * 60.00326 * 6 3 2 8 8 C 1.53002 * 109.47354 * 300.00205 * 6 3 2 9 9 N 1.46504 * 109.47325 * 180.02562 * 6 3 2 10 10 C 1.34775 * 119.99908 * 205.00522 * 9 6 3 11 11 O 1.21368 * 120.00044 * 359.97438 * 10 9 6 12 12 C 1.49314 * 120.00065 * 180.02562 * 10 9 6 13 13 O 1.21392 * 119.99767 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00434 * 179.97438 * 12 10 9 15 15 C 1.39739 * 120.00261 * 175.49513 * 14 12 10 16 16 C 1.38998 * 120.00666 * 214.86642 * 15 14 12 17 17 C 1.37969 * 119.98939 * 179.74146 * 16 15 14 18 18 C 1.38935 * 120.00680 * 0.50984 * 17 16 15 19 19 O 1.35765 * 119.98748 * 179.74524 * 18 17 16 20 20 C 1.34806 * 116.99364 * 185.36351 * 19 18 17 21 21 H 1.07994 * 120.00352 * 354.96283 * 20 19 18 22 22 C 1.38653 * 119.99542 * 174.96631 * 20 19 18 23 23 N 1.31563 * 120.00305 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99856 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47217 * 89.99485 * 24 22 20 26 26 H 1.48499 * 109.46723 * 209.99646 * 24 22 20 27 27 H 1.48497 * 109.47075 * 329.99518 * 24 22 20 28 28 C 1.38933 * 120.01646 * 359.76352 * 18 17 16 29 29 C 1.37964 * 120.00588 * 359.97438 * 28 18 17 30 30 H 1.09005 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46901 * 299.99702 * 1 2 3 32 32 H 1.08994 * 109.47255 * 59.99406 * 1 2 3 33 33 H 1.09005 * 109.47344 * 240.00001 * 2 1 3 34 34 H 1.09002 * 109.47525 * 120.00572 * 2 1 3 35 35 H 1.09002 * 109.46730 * 299.99984 * 5 3 2 36 36 H 1.09003 * 109.46889 * 59.99728 * 5 3 2 37 37 H 1.08995 * 109.47299 * 179.97438 * 5 3 2 38 38 H 1.09005 * 109.46934 * 59.99773 * 8 6 3 39 39 H 1.08999 * 109.47151 * 300.00045 * 8 6 3 40 40 H 1.09003 * 109.47064 * 179.97438 * 8 6 3 41 41 H 0.96997 * 119.99989 * 24.99796 * 9 6 3 42 42 H 0.96995 * 119.99695 * 355.48971 * 14 12 10 43 43 H 1.07997 * 120.00119 * 359.97438 * 16 15 14 44 44 H 1.08003 * 119.99344 * 180.24919 * 17 16 15 45 45 H 0.96999 * 120.00151 * 180.02562 * 23 22 20 46 46 H 1.08001 * 119.99361 * 179.97438 * 28 18 17 47 47 H 1.08003 * 120.00238 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4442 0.1257 7 1 3.9994 0.9053 -0.7161 8 6 3.9697 0.7602 1.4331 9 7 4.0532 2.8255 0.1263 10 6 5.3118 3.0954 -0.2728 11 8 6.0409 2.1941 -0.6324 12 6 5.8098 4.5031 -0.2717 13 8 5.0807 5.4044 0.0884 14 7 7.0686 4.7730 -0.6704 15 6 7.5045 6.0977 -0.7593 16 6 8.3960 6.4706 -1.7584 17 6 8.8220 7.7797 -1.8491 18 6 8.3683 8.7229 -0.9354 19 8 8.7918 10.0099 -1.0219 20 6 8.4030 10.8492 -0.0412 21 1 7.7169 10.5090 0.7203 22 6 8.8838 12.1494 -0.0104 23 7 9.7198 12.5637 -0.9379 24 14 8.3455 13.3122 1.3488 25 1 9.2834 13.2021 2.4948 26 1 8.3498 14.7065 0.8378 27 1 6.9753 12.9525 1.7942 28 6 7.4817 8.3493 0.0669 29 6 7.0511 7.0415 0.1548 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0698 1.5875 -2.1492 36 1 0.5489 2.1253 -1.3968 37 1 1.9982 3.1543 -1.3071 38 1 3.6063 -0.2675 1.4330 39 1 3.5350 1.2992 2.2749 40 1 5.0560 0.7611 1.5224 41 1 3.4706 3.5457 0.4139 42 1 7.6720 4.0477 -0.8955 43 1 8.7521 5.7365 -2.4659 44 1 9.5115 8.0704 -2.6279 45 1 10.0565 13.4732 -0.9161 46 1 7.1296 9.0827 0.7772 47 1 6.3622 6.7510 0.9343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329072941.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:34 Heat of formation + Delta-G solvation = -102.500795 kcal Electronic energy + Delta-G solvation = -27808.669316 eV Core-core repulsion = 23763.196725 eV Total energy + Delta-G solvation = -4045.472591 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.11887 -40.90028 -40.03252 -38.51493 -38.21440 -35.75553 -34.89242 -34.17008 -31.92857 -31.54861 -30.25169 -29.89739 -27.45301 -26.18464 -25.35902 -24.07436 -23.48359 -22.41861 -21.51500 -20.97155 -20.10368 -19.54917 -18.82556 -18.33237 -17.46682 -17.15884 -16.81550 -16.28594 -16.05055 -15.91733 -15.68968 -15.50383 -15.31553 -15.07387 -14.92353 -14.69199 -14.50149 -14.21503 -14.14271 -13.59159 -13.49551 -13.39532 -13.27172 -13.02477 -12.76696 -12.70380 -12.68144 -12.53882 -12.44408 -12.31292 -12.12787 -11.65250 -11.49023 -11.46056 -11.37324 -11.12797 -10.71200 -10.57425 -10.31119 -9.88218 -8.70502 -8.47580 -6.14353 0.06014 0.50557 0.69407 1.24616 1.36060 1.44712 1.53011 2.06993 2.17764 2.56219 2.79068 3.12554 3.33552 3.48611 3.61060 3.88843 3.97716 4.05725 4.08034 4.32544 4.35498 4.44696 4.50334 4.57476 4.62987 4.64164 4.72166 4.74719 4.81543 4.90676 5.04526 5.06296 5.06914 5.09163 5.17586 5.19816 5.26649 5.30312 5.33681 5.36707 5.48752 5.49697 5.55117 5.66134 5.88256 6.01073 6.09790 6.31252 6.70488 6.88781 6.97128 7.75010 8.74869 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022096 B = 0.001961 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.876111 B =14278.504045 C =14939.366550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.086 0.914 5 C -0.152 4.152 6 C 0.142 3.858 7 H 0.082 0.918 8 C -0.164 4.164 9 N -0.682 5.682 10 C 0.520 3.480 11 O -0.537 6.537 12 C 0.498 3.502 13 O -0.530 6.530 14 N -0.619 5.619 15 C 0.049 3.951 16 C -0.071 4.071 17 C -0.179 4.179 18 C 0.113 3.887 19 O -0.224 6.224 20 C -0.414 4.414 21 H 0.101 0.899 22 C -0.020 4.020 23 N -0.916 5.916 24 Si 1.017 2.983 25 H -0.263 1.263 26 H -0.270 1.270 27 H -0.255 1.255 28 C -0.228 4.228 29 C -0.068 4.068 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.417 0.583 42 H 0.429 0.571 43 H 0.164 0.836 44 H 0.131 0.869 45 H 0.273 0.727 46 H 0.122 0.878 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 -26.277 3.480 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.105 0.895 5 C -0.210 4.210 6 C 0.039 3.961 7 H 0.101 0.899 8 C -0.222 4.222 9 N -0.335 5.335 10 C 0.300 3.700 11 O -0.414 6.414 12 C 0.280 3.720 13 O -0.407 6.407 14 N -0.266 5.266 15 C -0.044 4.044 16 C -0.091 4.091 17 C -0.199 4.199 18 C 0.061 3.939 19 O -0.130 6.130 20 C -0.490 4.490 21 H 0.118 0.882 22 C -0.218 4.218 23 N -0.554 5.554 24 Si 0.836 3.164 25 H -0.188 1.188 26 H -0.195 1.195 27 H -0.179 1.179 28 C -0.247 4.247 29 C -0.088 4.088 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.255 0.745 42 H 0.268 0.732 43 H 0.182 0.818 44 H 0.148 0.852 45 H 0.082 0.918 46 H 0.140 0.860 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.969 -26.044 3.242 30.722 hybrid contribution 0.127 1.024 0.408 1.109 sum -15.842 -25.021 3.650 29.838 Atomic orbital electron populations 1.21813 0.95127 1.02062 1.02087 1.21600 0.96461 0.94410 1.02988 1.21434 0.91908 0.98415 0.99371 0.89544 1.21915 1.02219 1.00040 0.96800 1.21317 0.94977 0.80185 0.99628 0.89942 1.22243 1.01321 1.02083 0.96550 1.45897 1.12293 1.11519 1.63749 1.19672 0.83693 0.87821 0.78798 1.90760 1.56266 1.46958 1.47434 1.20507 0.82488 0.89990 0.79015 1.90775 1.56482 1.47548 1.45847 1.42789 1.12571 1.07006 1.64275 1.17371 1.03648 0.84254 0.99174 1.20780 0.96973 0.95057 0.96294 1.20304 1.05839 0.91968 1.01793 1.19967 0.93364 0.85487 0.95032 1.83940 1.66936 1.15599 1.46563 1.21801 1.28508 0.92635 1.06072 0.88217 1.26547 0.95909 0.98370 1.00982 1.70172 1.31403 1.18797 1.35024 0.84612 0.79256 0.76349 0.76185 1.18772 1.19490 1.17882 1.21105 1.03644 0.97465 1.02531 1.20938 0.98481 0.91721 0.97669 0.92215 0.92477 0.92577 0.91720 0.90421 0.92930 0.91096 0.93435 0.89082 0.91471 0.93704 0.74529 0.73200 0.81842 0.85153 0.91764 0.85997 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 71.98 0.70 -0.35 16 2 C -0.12 -0.85 5.19 30.59 0.16 -0.69 16 3 C -0.09 -0.86 2.02 -10.79 -0.02 -0.89 16 4 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 5 C -0.15 -1.69 8.79 71.98 0.63 -1.06 16 6 C 0.14 1.87 2.16 44.99 0.10 1.97 16 7 H 0.08 1.31 7.58 -2.39 -0.02 1.29 16 8 C -0.16 -1.92 9.14 71.98 0.66 -1.26 16 9 N -0.68 -11.60 4.38 -444.00 -1.94 -13.54 16 10 C 0.52 11.75 7.85 87.23 0.68 12.43 16 11 O -0.54 -13.66 16.14 -3.30 -0.05 -13.71 16 12 C 0.50 13.40 7.73 87.23 0.67 14.07 16 13 O -0.53 -16.84 13.91 -3.38 -0.05 -16.89 16 14 N -0.62 -16.41 5.32 -304.74 -1.62 -18.03 16 15 C 0.05 1.62 6.30 38.24 0.24 1.86 16 16 C -0.07 -2.30 9.96 22.39 0.22 -2.08 16 17 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 18 C 0.11 5.56 6.65 22.60 0.15 5.71 16 19 O -0.22 -13.34 9.75 -22.66 -0.22 -13.56 16 20 C -0.41 -24.07 9.48 67.92 0.64 -23.43 16 21 H 0.10 5.38 5.19 -2.91 -0.02 5.36 16 22 C -0.02 -1.13 5.49 84.83 0.47 -0.67 16 23 N -0.92 -55.72 13.67 21.61 0.30 -55.42 16 24 Si 1.02 42.90 29.55 68.60 2.03 44.93 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 28 C -0.23 -10.28 9.16 22.37 0.20 -10.07 16 29 C -0.07 -2.63 8.68 22.39 0.19 -2.44 16 30 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.06 0.41 6.56 -2.39 -0.02 0.39 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.08 0.46 6.17 -2.39 -0.01 0.44 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.07 0.66 6.57 -2.39 -0.02 0.65 16 37 H 0.05 0.63 7.45 -2.39 -0.02 0.62 16 38 H 0.09 0.73 6.32 -2.38 -0.02 0.71 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.42 6.50 7.86 -92.71 -0.73 5.77 16 42 H 0.43 9.13 8.30 -92.71 -0.77 8.37 16 43 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 45 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 47 H 0.13 4.92 6.22 -2.91 -0.02 4.90 16 Total: -1.00 -72.29 387.57 3.89 -68.40 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.48 Total: 31.78 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 5.93 Total: -13.96 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -3.27 Total: -86.99 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.32 Total: -44.16 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.29 3.89 -68.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329072941.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.097 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds