Wall clock time and date at job start Tue Mar 31 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47007 * 2 1 4 4 H 1.09004 * 109.47124 * 305.00069 * 3 2 1 5 5 C 1.53002 * 109.47538 * 64.99743 * 3 2 1 6 6 C 1.53000 * 109.47449 * 185.00116 * 3 2 1 7 7 H 1.09004 * 109.46919 * 300.00079 * 6 3 2 8 8 C 1.52994 * 109.47162 * 59.99523 * 6 3 2 9 9 N 1.46498 * 109.47541 * 180.02562 * 6 3 2 10 10 C 1.34769 * 120.00025 * 154.99984 * 9 6 3 11 11 O 1.21364 * 120.00526 * 359.97438 * 10 9 6 12 12 C 1.49323 * 119.99752 * 179.97438 * 10 9 6 13 13 O 1.21390 * 120.00264 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00106 * 180.02562 * 12 10 9 15 15 C 1.39738 * 120.00077 * 175.50009 * 14 12 10 16 16 C 1.39001 * 120.00502 * 214.86345 * 15 14 12 17 17 C 1.37966 * 119.99103 * 179.74191 * 16 15 14 18 18 C 1.38942 * 120.00624 * 0.50791 * 17 16 15 19 19 O 1.35754 * 119.98893 * 179.74558 * 18 17 16 20 20 C 1.34809 * 116.99804 * 185.36846 * 19 18 17 21 21 H 1.07999 * 119.99823 * 354.96925 * 20 19 18 22 22 C 1.38652 * 120.00088 * 174.96162 * 20 19 18 23 23 N 1.31566 * 119.99660 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99941 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.46994 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.47225 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47635 * 300.00410 * 24 22 20 28 28 C 1.38928 * 120.01251 * 359.77098 * 18 17 16 29 29 C 1.37968 * 120.01245 * 359.97184 * 28 18 17 30 30 H 1.09006 * 109.46836 * 60.00371 * 1 2 3 31 31 H 1.09006 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47407 * 299.99995 * 1 2 3 33 33 H 1.09000 * 109.47232 * 239.99750 * 2 1 3 34 34 H 1.08996 * 109.46788 * 119.99596 * 2 1 3 35 35 H 1.09004 * 109.46647 * 60.00033 * 5 3 2 36 36 H 1.08998 * 109.47549 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46802 * 300.00309 * 5 3 2 38 38 H 1.09001 * 109.47370 * 180.02562 * 8 6 3 39 39 H 1.09006 * 109.47650 * 300.00567 * 8 6 3 40 40 H 1.09004 * 109.47208 * 60.00178 * 8 6 3 41 41 H 0.97004 * 119.99743 * 334.99066 * 9 6 3 42 42 H 0.97004 * 119.99483 * 355.49241 * 14 12 10 43 43 H 1.08002 * 120.00153 * 0.02562 * 16 15 14 44 44 H 1.07999 * 119.99312 * 180.25728 * 17 16 15 45 45 H 0.97003 * 119.99399 * 180.02562 * 23 22 20 46 46 H 1.08000 * 119.99738 * 179.97438 * 28 18 17 47 47 H 1.07999 * 120.00423 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 1 3.9995 0.9054 0.7161 8 6 3.9696 0.7603 -1.4330 9 7 4.0532 2.8256 -0.1251 10 6 5.3118 3.0951 0.2741 11 8 6.0406 2.1937 0.6337 12 6 5.8097 4.5029 0.2742 13 8 5.0807 5.4046 -0.0849 14 7 7.0687 4.7724 0.6730 15 6 7.5658 6.0754 0.5845 16 6 8.9047 6.2892 0.2786 17 6 9.3940 7.5759 0.1860 18 6 8.5509 8.6576 0.4088 19 8 9.0340 9.9234 0.3227 20 6 8.1942 10.9230 0.6585 21 1 7.1643 10.7050 0.8998 22 6 8.6526 12.2311 0.6942 23 7 9.9071 12.4967 0.3999 24 14 7.4887 13.6163 1.1588 25 1 6.9631 13.3829 2.5280 26 1 8.2183 14.9092 1.1219 27 1 6.3594 13.6581 0.1955 28 6 7.2140 8.4440 0.7203 29 6 6.7228 7.1577 0.8079 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0699 1.5876 2.1491 36 1 1.9989 3.1541 1.3075 37 1 0.5489 2.1252 1.3968 38 1 5.0559 0.7613 -1.5224 39 1 3.6063 -0.2674 -1.4331 40 1 3.5349 1.2993 -2.2749 41 1 3.4706 3.5461 -0.4123 42 1 7.6295 4.0619 1.0216 43 1 9.5609 5.4483 0.1089 44 1 10.4334 7.7422 -0.0558 45 1 10.2279 13.4118 0.4252 46 1 6.5590 9.2850 0.8939 47 1 5.6835 6.9918 1.0504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329072942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:38 Heat of formation + Delta-G solvation = -81.595906 kcal Electronic energy + Delta-G solvation = -27808.752259 eV Core-core repulsion = 23764.186172 eV Total energy + Delta-G solvation = -4044.566087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95736 -39.56035 -38.60809 -37.72454 -36.61062 -34.63711 -33.81766 -32.22292 -30.89280 -30.26677 -29.77507 -28.33630 -25.66583 -24.97795 -24.79496 -22.80251 -22.18879 -21.12990 -20.72678 -19.95977 -18.75896 -17.95143 -17.28905 -16.97615 -16.29679 -15.94981 -15.77031 -15.41007 -14.82412 -14.55182 -14.47615 -14.27388 -14.03429 -13.71306 -13.68479 -13.63208 -13.57479 -12.95123 -12.91703 -12.63232 -12.54319 -12.22728 -12.04108 -11.88955 -11.81987 -11.74858 -11.60511 -11.39250 -11.14524 -11.03811 -10.99604 -10.91308 -10.77917 -10.47610 -9.79314 -9.62680 -9.49561 -9.22214 -8.74823 -8.26671 -7.01670 -6.48169 -4.05572 1.26612 2.12407 2.17704 2.38242 3.12596 3.13052 3.16537 3.23447 3.60165 3.95054 4.15170 4.37818 4.38719 4.48039 4.54416 4.79255 4.91186 4.99051 5.06081 5.10175 5.14710 5.21769 5.22938 5.35125 5.47830 5.53290 5.55611 5.61501 5.62592 5.65278 5.67682 5.84859 5.90038 5.97827 6.03635 6.06949 6.10490 6.23866 6.62665 6.72329 6.88666 6.95350 7.04386 7.23864 7.38174 7.44962 7.68031 7.73533 7.96534 8.09213 8.97192 9.65550 10.69318 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.001992 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.152171 B =14052.820768 C =15081.200963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.100 4.100 4 H 0.078 0.922 5 C -0.152 4.152 6 C 0.144 3.856 7 H 0.092 0.908 8 C -0.168 4.168 9 N -0.696 5.696 10 C 0.513 3.487 11 O -0.523 6.523 12 C 0.495 3.505 13 O -0.510 6.510 14 N -0.624 5.624 15 C 0.022 3.978 16 C -0.085 4.085 17 C -0.178 4.178 18 C 0.150 3.850 19 O -0.173 6.173 20 C -0.392 4.392 21 H 0.093 0.907 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.269 1.269 28 C -0.222 4.222 29 C -0.060 4.060 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.412 0.588 42 H 0.414 0.586 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.271 0.729 46 H 0.132 0.868 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.233 -23.140 -0.353 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.119 4.119 4 H 0.097 0.903 5 C -0.209 4.209 6 C 0.040 3.960 7 H 0.110 0.890 8 C -0.226 4.226 9 N -0.350 5.350 10 C 0.294 3.706 11 O -0.399 6.399 12 C 0.276 3.724 13 O -0.385 6.385 14 N -0.269 5.269 15 C -0.070 4.070 16 C -0.105 4.105 17 C -0.197 4.197 18 C 0.095 3.905 19 O -0.076 6.076 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.203 1.203 27 H -0.194 1.194 28 C -0.242 4.242 29 C -0.080 4.080 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.249 0.751 42 H 0.250 0.750 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.081 0.919 46 H 0.150 0.850 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.857 -22.854 -0.448 27.263 hybrid contribution -0.593 0.677 0.211 0.924 sum -15.450 -22.178 -0.237 27.030 Atomic orbital electron populations 1.21818 0.95500 1.01711 1.02081 1.21607 0.96198 0.95279 1.02612 1.21471 0.93447 0.97547 0.99434 0.90336 1.21910 1.01612 1.00795 0.96610 1.21138 0.93813 0.81605 0.99485 0.88995 1.22265 1.02512 1.00870 0.96936 1.45839 1.13315 1.10333 1.65480 1.20156 0.82844 0.89358 0.78239 1.90751 1.55613 1.47175 1.46320 1.20055 0.83526 0.89060 0.79768 1.90774 1.55324 1.46452 1.45994 1.42845 1.13515 1.10164 1.60382 1.17242 0.93869 0.82440 1.13490 1.20392 0.93427 0.96392 1.00273 1.20002 0.99672 0.89885 1.10184 1.19441 0.91764 0.86467 0.92801 1.83966 1.40001 1.10117 1.73503 1.21310 0.93093 0.84621 1.47770 0.88971 1.25305 0.96885 0.97648 0.96648 1.70035 1.14281 1.20886 1.44275 0.85767 0.79160 0.79116 0.79340 1.19440 1.20259 1.19435 1.21086 0.95941 0.96893 1.10280 1.20836 0.99171 0.90995 0.96979 0.92672 0.92690 0.92376 0.91229 0.91630 0.92477 0.92300 0.92011 0.91871 0.90984 0.92152 0.75101 0.75000 0.86432 0.85841 0.91898 0.85049 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.67 37.16 0.36 -0.34 16 2 C -0.12 -0.58 5.19 -26.73 -0.14 -0.72 16 3 C -0.10 -0.58 2.02 -90.62 -0.18 -0.77 16 4 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.96 8.79 37.16 0.33 -0.64 16 6 C 0.14 1.11 2.16 -67.93 -0.15 0.96 16 7 H 0.09 0.82 7.58 -51.93 -0.39 0.42 16 8 C -0.17 -1.20 9.14 37.15 0.34 -0.86 16 9 N -0.70 -6.65 4.38 -54.28 -0.24 -6.89 16 10 C 0.51 6.37 7.85 -11.65 -0.09 6.27 16 11 O -0.52 -7.25 16.14 5.48 0.09 -7.17 16 12 C 0.49 7.23 7.73 -11.64 -0.09 7.14 16 13 O -0.51 -8.57 13.91 5.46 0.08 -8.50 16 14 N -0.62 -9.17 5.32 -10.27 -0.05 -9.23 16 15 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 16 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 17 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 18 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 19 O -0.17 -4.87 9.75 0.10 0.00 -4.87 16 20 C -0.39 -10.85 9.48 30.89 0.29 -10.56 16 21 H 0.09 2.37 5.19 -52.49 -0.27 2.09 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 24 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 29 C -0.06 -1.18 8.68 -39.40 -0.34 -1.53 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 33 H 0.07 0.31 6.17 -51.93 -0.32 -0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.43 7.44 -51.93 -0.39 0.04 16 37 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.40 6.32 -51.93 -0.33 0.07 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.41 3.65 7.86 -40.82 -0.32 3.33 16 42 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 43 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 2.90 5.63 -52.49 -0.30 2.61 16 47 H 0.13 2.38 6.22 -52.49 -0.33 2.06 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -31.75 387.56 -6.86 -38.60 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.60 Total: 9.09 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.70 Total: -8.06 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 0.47 Total: -40.31 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.17 Total: -20.54 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.75 -6.86 -38.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329072942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.991 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds