Wall clock time and date at job start Tue Mar 31 2020 17:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47007 * 2 1 4 4 H 1.09004 * 109.47124 * 305.00069 * 3 2 1 5 5 C 1.53002 * 109.47538 * 64.99743 * 3 2 1 6 6 C 1.53000 * 109.47449 * 185.00116 * 3 2 1 7 7 H 1.09004 * 109.46919 * 300.00079 * 6 3 2 8 8 C 1.52994 * 109.47162 * 59.99523 * 6 3 2 9 9 N 1.46498 * 109.47541 * 180.02562 * 6 3 2 10 10 C 1.34769 * 120.00025 * 154.99984 * 9 6 3 11 11 O 1.21364 * 120.00526 * 359.97438 * 10 9 6 12 12 C 1.49323 * 119.99752 * 179.97438 * 10 9 6 13 13 O 1.21390 * 120.00264 * 0.02562 * 12 10 9 14 14 N 1.34780 * 120.00106 * 180.02562 * 12 10 9 15 15 C 1.39738 * 120.00077 * 175.50009 * 14 12 10 16 16 C 1.39001 * 120.00502 * 214.86345 * 15 14 12 17 17 C 1.37966 * 119.99103 * 179.74191 * 16 15 14 18 18 C 1.38942 * 120.00624 * 0.50791 * 17 16 15 19 19 O 1.35754 * 119.98893 * 179.74558 * 18 17 16 20 20 C 1.34809 * 116.99804 * 185.36846 * 19 18 17 21 21 H 1.07999 * 119.99823 * 354.96925 * 20 19 18 22 22 C 1.38652 * 120.00088 * 174.96162 * 20 19 18 23 23 N 1.31566 * 119.99660 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99941 * 179.97438 * 22 20 19 25 25 H 1.48511 * 109.46994 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.47225 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47635 * 300.00410 * 24 22 20 28 28 C 1.38928 * 120.01251 * 359.77098 * 18 17 16 29 29 C 1.37968 * 120.01245 * 359.97184 * 28 18 17 30 30 H 1.09006 * 109.46836 * 60.00371 * 1 2 3 31 31 H 1.09006 * 109.46885 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47407 * 299.99995 * 1 2 3 33 33 H 1.09000 * 109.47232 * 239.99750 * 2 1 3 34 34 H 1.08996 * 109.46788 * 119.99596 * 2 1 3 35 35 H 1.09004 * 109.46647 * 60.00033 * 5 3 2 36 36 H 1.08998 * 109.47549 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.46802 * 300.00309 * 5 3 2 38 38 H 1.09001 * 109.47370 * 180.02562 * 8 6 3 39 39 H 1.09006 * 109.47650 * 300.00567 * 8 6 3 40 40 H 1.09004 * 109.47208 * 60.00178 * 8 6 3 41 41 H 0.97004 * 119.99743 * 334.99066 * 9 6 3 42 42 H 0.97004 * 119.99483 * 355.49241 * 14 12 10 43 43 H 1.08002 * 120.00153 * 0.02562 * 16 15 14 44 44 H 1.07999 * 119.99312 * 180.25728 * 17 16 15 45 45 H 0.97003 * 119.99399 * 180.02562 * 23 22 20 46 46 H 1.08000 * 119.99738 * 179.97438 * 28 18 17 47 47 H 1.07999 * 120.00423 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 1 3.9995 0.9054 0.7161 8 6 3.9696 0.7603 -1.4330 9 7 4.0532 2.8256 -0.1251 10 6 5.3118 3.0951 0.2741 11 8 6.0406 2.1937 0.6337 12 6 5.8097 4.5029 0.2742 13 8 5.0807 5.4046 -0.0849 14 7 7.0687 4.7724 0.6730 15 6 7.5658 6.0754 0.5845 16 6 8.9047 6.2892 0.2786 17 6 9.3940 7.5759 0.1860 18 6 8.5509 8.6576 0.4088 19 8 9.0340 9.9234 0.3227 20 6 8.1942 10.9230 0.6585 21 1 7.1643 10.7050 0.8998 22 6 8.6526 12.2311 0.6942 23 7 9.9071 12.4967 0.3999 24 14 7.4887 13.6163 1.1588 25 1 6.9631 13.3829 2.5280 26 1 8.2183 14.9092 1.1219 27 1 6.3594 13.6581 0.1955 28 6 7.2140 8.4440 0.7203 29 6 6.7228 7.1577 0.8079 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0699 1.5876 2.1491 36 1 1.9989 3.1541 1.3075 37 1 0.5489 2.1252 1.3968 38 1 5.0559 0.7613 -1.5224 39 1 3.6063 -0.2674 -1.4331 40 1 3.5349 1.2993 -2.2749 41 1 3.4706 3.5461 -0.4123 42 1 7.6295 4.0619 1.0216 43 1 9.5609 5.4483 0.1089 44 1 10.4334 7.7422 -0.0558 45 1 10.2279 13.4118 0.4252 46 1 6.5590 9.2850 0.8939 47 1 5.6835 6.9918 1.0504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329072942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:37 Heat of formation + Delta-G solvation = -102.416796 kcal Electronic energy + Delta-G solvation = -27809.655121 eV Core-core repulsion = 23764.186172 eV Total energy + Delta-G solvation = -4045.468949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.11865 -40.90016 -40.03264 -38.51485 -38.21370 -35.75458 -34.89210 -34.16885 -31.92763 -31.55017 -30.25034 -29.89625 -27.45051 -26.18391 -25.35781 -24.07534 -23.48236 -22.41601 -21.51683 -20.96960 -20.10267 -19.54939 -18.83007 -18.32248 -17.50589 -17.10217 -16.77723 -16.33072 -16.15646 -15.90215 -15.55984 -15.49256 -15.33818 -15.16263 -14.88708 -14.67280 -14.49881 -14.18968 -14.16530 -13.59169 -13.51537 -13.37317 -13.26692 -13.02792 -12.76744 -12.69758 -12.67305 -12.53908 -12.44361 -12.31000 -12.14933 -11.65140 -11.48942 -11.46810 -11.37220 -11.11754 -10.70669 -10.57719 -10.31098 -9.88140 -8.70428 -8.47282 -6.14155 0.06054 0.50636 0.69631 1.24555 1.36110 1.46229 1.51787 2.07050 2.18088 2.56223 2.79187 3.12730 3.33558 3.48712 3.61094 3.88945 3.97837 4.05807 4.08092 4.32383 4.35492 4.44748 4.50295 4.57557 4.63148 4.64215 4.72197 4.74790 4.81595 4.90503 5.04418 5.06494 5.06975 5.09232 5.17679 5.19848 5.26656 5.30340 5.33630 5.36747 5.48823 5.49773 5.55157 5.66189 5.88292 6.01070 6.09853 6.31256 6.70493 6.88802 6.97243 7.75083 8.74894 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021432 B = 0.001992 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.152171 B =14052.820768 C =15081.200963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.092 4.092 4 H 0.086 0.914 5 C -0.152 4.152 6 C 0.142 3.858 7 H 0.083 0.917 8 C -0.164 4.164 9 N -0.682 5.682 10 C 0.520 3.480 11 O -0.537 6.537 12 C 0.498 3.502 13 O -0.530 6.530 14 N -0.619 5.619 15 C 0.049 3.951 16 C -0.071 4.071 17 C -0.179 4.179 18 C 0.113 3.887 19 O -0.224 6.224 20 C -0.415 4.415 21 H 0.100 0.900 22 C -0.020 4.020 23 N -0.916 5.916 24 Si 1.016 2.984 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.259 1.259 28 C -0.228 4.228 29 C -0.068 4.068 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.417 0.583 42 H 0.429 0.571 43 H 0.164 0.836 44 H 0.130 0.870 45 H 0.273 0.727 46 H 0.123 0.877 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 -25.867 -0.385 31.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.111 4.111 4 H 0.104 0.896 5 C -0.210 4.210 6 C 0.039 3.961 7 H 0.101 0.899 8 C -0.222 4.222 9 N -0.335 5.335 10 C 0.300 3.700 11 O -0.414 6.414 12 C 0.280 3.720 13 O -0.407 6.407 14 N -0.266 5.266 15 C -0.045 4.045 16 C -0.091 4.091 17 C -0.199 4.199 18 C 0.061 3.939 19 O -0.130 6.130 20 C -0.491 4.491 21 H 0.118 0.882 22 C -0.218 4.218 23 N -0.554 5.554 24 Si 0.836 3.164 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.183 1.183 28 C -0.248 4.248 29 C -0.088 4.088 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.255 0.745 42 H 0.268 0.732 43 H 0.182 0.818 44 H 0.148 0.852 45 H 0.082 0.918 46 H 0.140 0.860 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.908 -25.673 -0.481 30.744 hybrid contribution -0.092 1.089 0.200 1.112 sum -17.000 -24.583 -0.280 29.890 Atomic orbital electron populations 1.21815 0.95120 1.02060 1.02091 1.21601 0.96467 0.94423 1.02979 1.21433 0.91874 0.98413 0.99413 0.89581 1.21913 1.02216 1.00076 0.96747 1.21315 0.95001 0.80187 0.99595 0.89903 1.22244 1.01306 1.02097 0.96587 1.45896 1.12229 1.11517 1.63815 1.19672 0.83641 0.87856 0.78813 1.90759 1.56194 1.46973 1.47491 1.20509 0.82956 0.89972 0.78566 1.90774 1.55832 1.47460 1.46585 1.42791 1.13999 1.09197 1.60657 1.17372 0.93770 0.83431 1.09893 1.20780 0.93822 0.96397 0.98107 1.20303 0.99868 0.90279 1.09462 1.19966 0.93136 0.86185 0.94567 1.83936 1.41117 1.11535 1.76432 1.21763 0.93680 0.85353 1.48294 0.88223 1.26549 0.98756 1.00128 0.96366 1.70172 1.16594 1.21543 1.47062 0.84678 0.76890 0.75358 0.79507 1.18220 1.19499 1.18329 1.21106 0.95347 0.97824 1.10486 1.20939 0.99922 0.90611 0.97333 0.92503 0.92226 0.92535 0.90464 0.91698 0.92918 0.93354 0.91091 0.93735 0.89066 0.91531 0.74527 0.73200 0.81848 0.85159 0.91766 0.85973 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 71.98 0.70 -0.34 16 2 C -0.12 -0.85 5.19 30.59 0.16 -0.69 16 3 C -0.09 -0.86 2.02 -10.79 -0.02 -0.88 16 4 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 5 C -0.15 -1.64 8.79 71.98 0.63 -1.01 16 6 C 0.14 1.87 2.16 44.99 0.10 1.97 16 7 H 0.08 1.30 7.58 -2.38 -0.02 1.29 16 8 C -0.16 -1.96 9.14 71.98 0.66 -1.30 16 9 N -0.68 -11.59 4.38 -444.01 -1.94 -13.54 16 10 C 0.52 11.75 7.85 87.23 0.68 12.44 16 11 O -0.54 -13.66 16.14 -3.29 -0.05 -13.71 16 12 C 0.50 13.40 7.73 87.23 0.67 14.07 16 13 O -0.53 -16.83 13.91 -3.37 -0.05 -16.88 16 14 N -0.62 -16.42 5.32 -304.73 -1.62 -18.04 16 15 C 0.05 1.61 6.30 38.25 0.24 1.86 16 16 C -0.07 -2.30 9.96 22.39 0.22 -2.08 16 17 C -0.18 -7.31 9.98 22.37 0.22 -7.09 16 18 C 0.11 5.56 6.65 22.60 0.15 5.71 16 19 O -0.22 -13.33 9.75 -22.57 -0.22 -13.55 16 20 C -0.41 -24.11 9.48 67.92 0.64 -23.47 16 21 H 0.10 5.36 5.19 -2.91 -0.02 5.34 16 22 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 23 N -0.92 -55.70 13.67 21.61 0.30 -55.41 16 24 Si 1.02 42.86 29.55 68.60 2.03 44.88 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 28 C -0.23 -10.28 9.16 22.37 0.20 -10.08 16 29 C -0.07 -2.63 8.68 22.39 0.19 -2.43 16 30 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.06 0.40 6.56 -2.39 -0.02 0.38 16 33 H 0.08 0.46 6.17 -2.39 -0.01 0.44 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.05 0.62 7.44 -2.39 -0.02 0.60 16 37 H 0.07 0.64 6.56 -2.39 -0.02 0.63 16 38 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.74 6.32 -2.38 -0.02 0.73 16 40 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.42 6.50 7.86 -92.70 -0.73 5.77 16 42 H 0.43 9.14 8.30 -92.70 -0.77 8.37 16 43 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 45 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 46 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 47 H 0.13 4.92 6.22 -2.91 -0.02 4.90 16 Total: -1.00 -72.25 387.56 3.89 -68.36 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.48 Total: 31.86 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 5.93 Total: -13.98 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.27 Total: -86.99 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.32 Total: -44.14 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -72.25 3.89 -68.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329072942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.057 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds