Wall clock time and date at job start Tue Mar 31 2020 18:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47247 * 2 1 4 4 H 1.09002 * 109.46708 * 54.99662 * 3 2 1 5 5 C 1.52990 * 109.47080 * 174.99964 * 3 2 1 6 6 O 1.42901 * 109.47508 * 54.55651 * 5 3 2 7 7 N 1.46497 * 109.46768 * 295.00407 * 3 2 1 8 8 C 1.46501 * 119.99764 * 307.99026 * 7 3 2 9 9 C 1.34773 * 120.00588 * 127.99530 * 7 3 2 10 10 O 1.21364 * 119.99422 * 5.38553 * 9 7 3 11 11 C 1.49345 * 120.00489 * 185.38507 * 9 7 3 12 12 O 1.21380 * 119.99988 * 4.26528 * 11 9 7 13 13 N 1.34778 * 120.00407 * 184.27083 * 11 9 7 14 14 C 1.39722 * 120.00317 * 185.00720 * 13 11 9 15 15 C 1.38932 * 120.07606 * 213.26419 * 14 13 11 16 16 C 1.38094 * 119.92085 * 179.76942 * 15 14 13 17 17 C 1.38291 * 120.07760 * 0.49133 * 16 15 14 18 18 C 1.50701 * 119.92455 * 179.76978 * 17 16 15 19 19 C 1.50700 * 109.46683 * 270.01881 * 18 17 16 20 20 H 1.08001 * 120.00331 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99884 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00348 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00228 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47480 * 89.99942 * 23 21 19 25 25 H 1.48501 * 109.47268 * 210.00084 * 23 21 19 26 26 H 1.48507 * 109.46939 * 330.00248 * 23 21 19 27 27 C 1.38293 * 120.15214 * 359.78824 * 17 16 15 28 28 C 1.38096 * 120.07731 * 359.95541 * 27 17 16 29 29 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47164 * 59.99966 * 1 2 3 31 31 H 1.09004 * 109.46949 * 300.00221 * 1 2 3 32 32 H 1.09004 * 109.47299 * 119.99416 * 2 1 3 33 33 H 1.08993 * 109.47438 * 239.99747 * 2 1 3 34 34 H 1.09007 * 109.47177 * 174.55426 * 5 3 2 35 35 H 1.08997 * 109.47440 * 294.55415 * 5 3 2 36 36 H 0.96697 * 114.00602 * 179.97438 * 6 5 3 37 37 H 1.08999 * 109.47651 * 95.87004 * 8 7 3 38 38 H 1.09008 * 109.47004 * 215.87268 * 8 7 3 39 39 H 1.08998 * 109.47335 * 335.87015 * 8 7 3 40 40 H 0.97008 * 119.99684 * 5.00571 * 13 11 9 41 41 H 1.07993 * 120.03769 * 0.02562 * 15 14 13 42 42 H 1.07998 * 119.96380 * 180.25612 * 16 15 14 43 43 H 1.08993 * 109.47471 * 30.01865 * 18 17 16 44 44 H 1.08999 * 109.47428 * 150.02495 * 18 17 16 45 45 H 0.96996 * 120.00604 * 179.97438 * 22 21 19 46 46 H 1.08008 * 119.96030 * 179.97438 * 27 17 16 47 47 H 1.07998 * 120.03943 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 8 4.1288 0.6321 -0.9058 7 7 1.6524 2.0975 -1.2518 8 6 1.9638 1.4653 -2.5362 9 6 1.0094 3.2816 -1.2219 10 8 0.8380 3.8524 -0.1647 11 6 0.5078 3.8912 -2.4896 12 8 0.6100 3.2853 -3.5364 13 7 -0.0583 5.1142 -2.4715 14 6 -0.6216 5.6407 -3.6367 15 6 -0.5757 7.0086 -3.8756 16 6 -1.1292 7.5250 -5.0306 17 6 -1.7375 6.6836 -5.9440 18 6 -2.3450 7.2515 -7.2008 19 6 -3.7873 7.6061 -6.9456 20 1 -4.2205 7.4376 -5.9708 21 6 -4.5538 8.1458 -7.9567 22 7 -5.8126 8.4549 -7.7343 23 14 -3.8047 8.4367 -9.6430 24 1 -3.9928 7.2271 -10.4836 25 1 -4.4719 9.5961 -10.2878 26 1 -2.3537 8.7181 -9.4983 27 6 -1.7901 5.3222 -5.7065 28 6 -1.2340 4.7983 -4.5562 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.9362 2.4646 0.0287 35 1 3.8496 1.0451 1.0991 36 1 5.0946 0.5874 -0.8876 37 1 1.0982 0.9007 -2.8826 38 1 2.2133 2.2335 -3.2682 39 1 2.8116 0.7914 -2.4134 40 1 -0.0747 5.6289 -1.6493 41 1 -0.1041 7.6667 -3.1610 42 1 -1.0902 8.5877 -5.2190 43 1 -1.7977 8.1463 -7.4967 44 1 -2.2887 6.5107 -7.9984 45 1 -6.3517 8.8349 -8.4454 46 1 -2.2664 4.6679 -6.4218 47 1 -1.2750 3.7350 -4.3715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336788102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:46 Heat of formation + Delta-G solvation = -84.507407 kcal Electronic energy + Delta-G solvation = -28457.871637 eV Core-core repulsion = 24413.179298 eV Total energy + Delta-G solvation = -4044.692339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28039 -39.72053 -38.27653 -37.81496 -36.06346 -35.03196 -33.18668 -32.92810 -30.89490 -30.43526 -29.57891 -27.60729 -26.90695 -25.10212 -23.89003 -22.75621 -22.47723 -21.05257 -20.12768 -19.76321 -18.45711 -17.85450 -17.33204 -16.77516 -16.76702 -16.48551 -15.82008 -15.36011 -14.96734 -14.90165 -14.55753 -14.37907 -14.11324 -13.87200 -13.64216 -13.32274 -13.07936 -13.05894 -12.94089 -12.80492 -12.50894 -12.44436 -12.25226 -11.73725 -11.67092 -11.63073 -11.49478 -11.42696 -11.20411 -10.84933 -10.53370 -10.51769 -10.24308 -10.04793 -9.80867 -9.36630 -9.33379 -9.05070 -8.58726 -8.40550 -7.50489 -6.07604 -4.06909 1.08137 1.91132 1.95064 2.13779 3.03348 3.28139 3.28973 3.36775 3.39443 3.73345 4.11149 4.29272 4.38379 4.41369 4.49561 4.72335 4.84243 4.95067 5.04887 5.20861 5.23479 5.33455 5.34146 5.40329 5.43387 5.54500 5.60562 5.72760 5.79128 5.84245 5.90855 5.93523 6.00598 6.05899 6.08891 6.49981 6.55299 6.68283 6.79470 6.91834 7.00258 7.01625 7.09802 7.19357 7.48076 7.55680 7.57226 7.69746 7.88082 8.48983 8.97680 9.52497 11.05235 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.002089 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.922262 B =13401.434516 C =13427.562494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C 0.138 3.862 4 H 0.113 0.887 5 C 0.067 3.933 6 O -0.565 6.565 7 N -0.572 5.572 8 C 0.070 3.930 9 C 0.508 3.492 10 O -0.526 6.526 11 C 0.501 3.499 12 O -0.495 6.495 13 N -0.636 5.636 14 C 0.102 3.898 15 C -0.136 4.136 16 C -0.105 4.105 17 C -0.034 4.034 18 C 0.014 3.986 19 C -0.513 4.513 20 H 0.074 0.926 21 C 0.069 3.931 22 N -0.899 5.899 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 C -0.105 4.105 28 C -0.114 4.114 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.378 0.622 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.417 0.583 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.029 0.971 44 H 0.024 0.976 45 H 0.264 0.736 46 H 0.124 0.876 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.755 -15.912 16.998 31.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.035 3.965 4 H 0.131 0.869 5 C -0.012 4.012 6 O -0.371 6.371 7 N -0.305 5.305 8 C -0.072 4.072 9 C 0.290 3.710 10 O -0.403 6.403 11 C 0.283 3.717 12 O -0.370 6.370 13 N -0.282 5.282 14 C 0.010 3.990 15 C -0.156 4.156 16 C -0.123 4.123 17 C -0.034 4.034 18 C -0.023 4.023 19 C -0.551 4.551 20 H 0.092 0.908 21 C -0.133 4.133 22 N -0.538 5.538 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.189 1.189 27 C -0.123 4.123 28 C -0.133 4.133 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.254 0.746 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.047 0.953 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.142 0.858 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.953 -16.095 16.604 30.543 hybrid contribution 0.709 0.559 -0.276 0.944 sum 20.662 -15.535 16.329 30.576 Atomic orbital electron populations 1.21779 0.95306 1.01874 1.02182 1.21778 0.96364 0.94803 1.03538 1.21438 0.92896 0.94675 0.87481 0.86908 1.22583 0.93348 0.94523 0.90708 1.86457 1.25539 1.71730 1.53423 1.47683 1.54727 1.19553 1.08568 1.22371 1.01865 0.99865 0.83074 1.20146 0.79380 0.82137 0.89309 1.90748 1.56767 1.61199 1.31612 1.20057 0.79694 0.82627 0.89331 1.90772 1.53557 1.60673 1.31971 1.43063 1.55236 1.17114 1.12788 1.17522 1.00218 0.92801 0.88482 1.20765 1.03196 0.92826 0.98772 1.20874 0.98269 0.99959 0.93228 1.20349 0.92927 0.92809 0.97326 1.18821 0.96867 0.96071 0.90581 1.20928 0.92646 1.41767 0.99747 0.90783 1.25005 0.94671 0.94913 0.98711 1.69897 1.07000 1.43449 1.33446 0.86802 0.79989 0.78129 0.84574 1.20155 1.21278 1.18910 1.20968 0.99132 0.95305 0.96938 1.20974 0.98023 0.99583 0.94754 0.92352 0.92640 0.92689 0.90692 0.90238 0.93073 0.92249 0.77381 0.92367 0.89349 0.88835 0.74601 0.86362 0.85682 0.95319 0.95740 0.92598 0.85794 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.80 37.16 0.36 -0.83 16 2 C -0.13 -0.86 4.96 -26.73 -0.13 -0.99 16 3 C 0.14 1.08 2.51 -67.93 -0.17 0.91 16 4 H 0.11 0.96 6.98 -51.93 -0.36 0.60 16 5 C 0.07 0.38 6.85 37.15 0.25 0.64 16 6 O -0.57 -3.05 10.11 -35.23 -0.36 -3.41 16 7 N -0.57 -5.68 2.22 -174.48 -0.39 -6.07 16 8 C 0.07 0.67 7.98 59.85 0.48 1.15 16 9 C 0.51 6.18 7.72 -11.64 -0.09 6.09 16 10 O -0.53 -7.07 15.87 5.48 0.09 -6.98 16 11 C 0.50 6.83 7.46 -11.63 -0.09 6.74 16 12 O -0.50 -7.50 11.03 5.47 0.06 -7.44 16 13 N -0.64 -8.65 5.32 -10.30 -0.05 -8.70 16 14 C 0.10 1.65 6.27 -83.75 -0.53 1.13 16 15 C -0.14 -2.16 9.96 -39.38 -0.39 -2.56 16 16 C -0.10 -1.94 9.69 -39.61 -0.38 -2.32 16 17 C -0.03 -0.70 5.07 -104.58 -0.53 -1.23 16 18 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 19 C -0.51 -14.44 9.65 -34.44 -0.33 -14.77 16 20 H 0.07 2.28 7.98 -52.49 -0.42 1.87 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 23 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.26 -6.13 6.54 56.52 0.37 -5.76 16 27 C -0.10 -2.03 9.69 -39.61 -0.38 -2.42 16 28 C -0.11 -2.01 8.66 -39.38 -0.34 -2.35 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.53 7.75 -51.93 -0.40 0.12 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.58 6.63 -51.93 -0.34 0.24 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.38 0.58 9.12 45.56 0.42 1.00 16 37 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.09 0.99 5.95 -51.92 -0.31 0.68 16 39 H 0.09 0.79 4.98 -51.93 -0.26 0.53 16 40 H 0.42 4.83 8.31 -40.82 -0.34 4.49 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 43 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 44 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 47 H 0.13 2.14 6.42 -52.49 -0.34 1.80 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -33.14 382.72 -7.36 -40.50 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.09 Total: 5.13 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.49 Total: -8.74 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.33 Total: -41.45 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.21 Total: -17.82 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.14 -7.36 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336788102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.009 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds