Wall clock time and date at job start Tue Mar 31 2020 18:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47247 * 2 1 4 4 H 1.09002 * 109.46708 * 54.99662 * 3 2 1 5 5 C 1.52990 * 109.47080 * 174.99964 * 3 2 1 6 6 O 1.42901 * 109.47508 * 54.55651 * 5 3 2 7 7 N 1.46497 * 109.46768 * 295.00407 * 3 2 1 8 8 C 1.46501 * 119.99764 * 307.99026 * 7 3 2 9 9 C 1.34773 * 120.00588 * 127.99530 * 7 3 2 10 10 O 1.21364 * 119.99422 * 5.38553 * 9 7 3 11 11 C 1.49345 * 120.00489 * 185.38507 * 9 7 3 12 12 O 1.21380 * 119.99988 * 4.26528 * 11 9 7 13 13 N 1.34778 * 120.00407 * 184.27083 * 11 9 7 14 14 C 1.39722 * 120.00317 * 185.00720 * 13 11 9 15 15 C 1.38932 * 120.07606 * 213.26419 * 14 13 11 16 16 C 1.38094 * 119.92085 * 179.76942 * 15 14 13 17 17 C 1.38291 * 120.07760 * 0.49133 * 16 15 14 18 18 C 1.50701 * 119.92455 * 179.76978 * 17 16 15 19 19 C 1.50700 * 109.46683 * 270.01881 * 18 17 16 20 20 H 1.08001 * 120.00331 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99884 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00348 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00228 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47480 * 89.99942 * 23 21 19 25 25 H 1.48501 * 109.47268 * 210.00084 * 23 21 19 26 26 H 1.48507 * 109.46939 * 330.00248 * 23 21 19 27 27 C 1.38293 * 120.15214 * 359.78824 * 17 16 15 28 28 C 1.38096 * 120.07731 * 359.95541 * 27 17 16 29 29 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47164 * 59.99966 * 1 2 3 31 31 H 1.09004 * 109.46949 * 300.00221 * 1 2 3 32 32 H 1.09004 * 109.47299 * 119.99416 * 2 1 3 33 33 H 1.08993 * 109.47438 * 239.99747 * 2 1 3 34 34 H 1.09007 * 109.47177 * 174.55426 * 5 3 2 35 35 H 1.08997 * 109.47440 * 294.55415 * 5 3 2 36 36 H 0.96697 * 114.00602 * 179.97438 * 6 5 3 37 37 H 1.08999 * 109.47651 * 95.87004 * 8 7 3 38 38 H 1.09008 * 109.47004 * 215.87268 * 8 7 3 39 39 H 1.08998 * 109.47335 * 335.87015 * 8 7 3 40 40 H 0.97008 * 119.99684 * 5.00571 * 13 11 9 41 41 H 1.07993 * 120.03769 * 0.02562 * 15 14 13 42 42 H 1.07998 * 119.96380 * 180.25612 * 16 15 14 43 43 H 1.08993 * 109.47471 * 30.01865 * 18 17 16 44 44 H 1.08999 * 109.47428 * 150.02495 * 18 17 16 45 45 H 0.96996 * 120.00604 * 179.97438 * 22 21 19 46 46 H 1.08008 * 119.96030 * 179.97438 * 27 17 16 47 47 H 1.07998 * 120.03943 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4444 0.1257 6 8 4.1288 0.6321 -0.9058 7 7 1.6524 2.0975 -1.2518 8 6 1.9638 1.4653 -2.5362 9 6 1.0094 3.2816 -1.2219 10 8 0.8380 3.8524 -0.1647 11 6 0.5078 3.8912 -2.4896 12 8 0.6100 3.2853 -3.5364 13 7 -0.0583 5.1142 -2.4715 14 6 -0.6216 5.6407 -3.6367 15 6 -0.5757 7.0086 -3.8756 16 6 -1.1292 7.5250 -5.0306 17 6 -1.7375 6.6836 -5.9440 18 6 -2.3450 7.2515 -7.2008 19 6 -3.7873 7.6061 -6.9456 20 1 -4.2205 7.4376 -5.9708 21 6 -4.5538 8.1458 -7.9567 22 7 -5.8126 8.4549 -7.7343 23 14 -3.8047 8.4367 -9.6430 24 1 -3.9928 7.2271 -10.4836 25 1 -4.4719 9.5961 -10.2878 26 1 -2.3537 8.7181 -9.4983 27 6 -1.7901 5.3222 -5.7065 28 6 -1.2340 4.7983 -4.5562 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 3.9362 2.4646 0.0287 35 1 3.8496 1.0451 1.0991 36 1 5.0946 0.5874 -0.8876 37 1 1.0982 0.9007 -2.8826 38 1 2.2133 2.2335 -3.2682 39 1 2.8116 0.7914 -2.4134 40 1 -0.0747 5.6289 -1.6493 41 1 -0.1041 7.6667 -3.1610 42 1 -1.0902 8.5877 -5.2190 43 1 -1.7977 8.1463 -7.4967 44 1 -2.2887 6.5107 -7.9984 45 1 -6.3517 8.8349 -8.4454 46 1 -2.2664 4.6679 -6.4218 47 1 -1.2750 3.7350 -4.3715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336788102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:45 Heat of formation + Delta-G solvation = -107.388668 kcal Electronic energy + Delta-G solvation = -28458.863843 eV Core-core repulsion = 24413.179298 eV Total energy + Delta-G solvation = -4045.684545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31461 -40.79447 -39.45969 -38.61376 -36.86427 -36.14625 -34.93878 -33.86097 -32.63531 -31.84746 -30.17339 -29.15420 -27.85883 -26.21906 -24.71329 -24.13036 -23.90128 -22.23368 -21.45213 -20.62271 -19.33548 -18.95209 -18.62148 -18.37847 -17.65065 -17.37262 -16.83113 -16.60437 -16.26208 -15.97655 -15.66339 -15.50914 -15.21313 -14.90944 -14.70431 -14.50980 -14.42872 -14.30120 -13.99174 -13.83726 -13.64906 -13.51349 -13.41987 -13.27425 -13.03903 -12.57869 -12.48371 -12.28268 -12.24981 -12.02597 -11.85762 -11.83107 -11.77380 -11.58494 -11.18471 -10.94605 -10.77445 -10.43024 -9.84916 -9.81389 -8.94026 -8.28294 -6.33344 -0.04198 0.52131 0.63094 1.13868 1.38526 1.39627 1.51743 1.97752 2.32563 2.36749 2.91336 3.06003 3.14041 3.35285 3.68899 3.95373 3.99147 4.07659 4.16981 4.27506 4.28478 4.45038 4.47563 4.51162 4.53847 4.59960 4.61755 4.70613 4.75512 4.89210 5.00564 5.02720 5.06709 5.11540 5.19171 5.20878 5.29023 5.32070 5.33557 5.38996 5.52309 5.58583 5.85530 5.97099 6.06372 6.13594 6.28871 6.56458 6.72983 6.79560 6.91695 7.29967 8.88055 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.002089 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.922262 B =13401.434516 C =13427.562494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.130 3.870 4 H 0.107 0.893 5 C 0.074 3.926 6 O -0.578 6.578 7 N -0.563 5.563 8 C 0.076 3.924 9 C 0.509 3.491 10 O -0.541 6.541 11 C 0.500 3.500 12 O -0.511 6.511 13 N -0.631 5.631 14 C 0.113 3.887 15 C -0.126 4.126 16 C -0.111 4.111 17 C -0.068 4.068 18 C 0.020 3.980 19 C -0.518 4.518 20 H 0.028 0.972 21 C 0.006 3.994 22 N -0.949 5.949 23 Si 0.951 3.049 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.244 1.244 27 C -0.115 4.115 28 C -0.120 4.120 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.429 0.571 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.036 0.964 44 H 0.029 0.971 45 H 0.267 0.733 46 H 0.121 0.879 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.623 -16.751 17.835 34.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.028 3.972 4 H 0.124 0.876 5 C -0.005 4.005 6 O -0.387 6.387 7 N -0.295 5.295 8 C -0.065 4.065 9 C 0.291 3.709 10 O -0.420 6.420 11 C 0.283 3.717 12 O -0.386 6.386 13 N -0.278 5.278 14 C 0.019 3.981 15 C -0.145 4.145 16 C -0.129 4.129 17 C -0.068 4.068 18 C -0.017 4.017 19 C -0.556 4.556 20 H 0.047 0.953 21 C -0.191 4.191 22 N -0.590 5.590 23 Si 0.774 3.226 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.167 1.167 27 C -0.134 4.134 28 C -0.140 4.140 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.248 0.752 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.268 0.732 41 H 0.174 0.826 42 H 0.151 0.849 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.139 0.861 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.871 -16.965 17.474 33.410 hybrid contribution -0.152 0.699 -0.373 0.807 sum 22.719 -16.266 17.101 32.759 Atomic orbital electron populations 1.21777 0.96251 1.02133 1.00962 1.21746 0.95406 0.94154 1.04418 1.21708 0.94727 0.94858 0.85957 0.87555 1.22472 0.91526 0.94503 0.91997 1.86379 1.27373 1.71489 1.53455 1.47806 1.53332 1.18684 1.09648 1.22307 1.02182 0.99423 0.82605 1.19846 0.79879 0.82861 0.88318 1.90744 1.57793 1.61825 1.31632 1.20425 0.79181 0.82314 0.89782 1.90773 1.54057 1.60997 1.32788 1.43014 1.54960 1.17376 1.12424 1.17614 0.98814 0.92953 0.88669 1.21052 1.01992 0.93140 0.98355 1.21037 0.98061 1.00191 0.93617 1.20233 0.95404 0.93735 0.97450 1.18665 0.94139 0.96483 0.92405 1.21159 0.95163 1.41380 0.97893 0.95315 1.25991 0.95001 0.94616 1.03462 1.70057 1.08823 1.44972 1.35107 0.85651 0.80071 0.78262 0.78661 1.19229 1.20892 1.16689 1.20986 0.99686 0.94969 0.97768 1.21012 0.98291 0.99996 0.94705 0.91402 0.94831 0.92879 0.88507 0.90524 0.93795 0.89699 0.75229 0.92923 0.90814 0.87219 0.73218 0.82603 0.84871 0.94597 0.95320 0.92402 0.86126 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.80 71.98 0.71 -1.50 16 2 C -0.12 -1.36 4.96 30.60 0.15 -1.21 16 3 C 0.13 1.77 2.51 44.99 0.11 1.89 16 4 H 0.11 1.64 6.98 -2.39 -0.02 1.62 16 5 C 0.07 0.65 6.85 71.98 0.49 1.14 16 6 O -0.58 -4.62 10.11 -148.98 -1.51 -6.13 16 7 N -0.56 -10.50 2.22 -824.29 -1.83 -12.32 16 8 C 0.08 1.39 7.98 127.77 1.02 2.41 16 9 C 0.51 11.88 7.72 87.24 0.67 12.56 16 10 O -0.54 -13.92 15.87 -3.29 -0.05 -13.97 16 11 C 0.50 13.18 7.46 87.24 0.65 13.83 16 12 O -0.51 -15.20 11.03 -3.34 -0.04 -15.24 16 13 N -0.63 -16.23 5.32 -304.84 -1.62 -17.85 16 14 C 0.11 3.51 6.27 38.22 0.24 3.75 16 15 C -0.13 -3.77 9.96 22.40 0.22 -3.54 16 16 C -0.11 -4.00 9.69 22.25 0.22 -3.79 16 17 C -0.07 -2.85 5.07 -19.84 -0.10 -2.95 16 18 C 0.02 0.97 4.17 29.10 0.12 1.09 16 19 C -0.52 -30.08 9.65 25.60 0.25 -29.83 16 20 H 0.03 1.87 7.98 -2.91 -0.02 1.84 16 21 C 0.01 0.36 5.47 84.65 0.46 0.83 16 22 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 23 Si 0.95 43.96 27.47 68.60 1.88 45.84 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 H -0.24 -10.36 6.54 99.48 0.65 -9.70 16 27 C -0.12 -4.56 9.69 22.25 0.22 -4.34 16 28 C -0.12 -4.24 8.66 22.40 0.19 -4.04 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.03 0.62 7.75 -2.39 -0.02 0.60 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.08 0.96 6.63 -2.39 -0.02 0.94 16 34 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.40 0.04 9.12 -74.06 -0.68 -0.63 16 37 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.07 1.59 5.95 -2.38 -0.01 1.58 16 39 H 0.11 1.65 4.98 -2.39 -0.01 1.64 16 40 H 0.43 9.11 8.31 -92.70 -0.77 8.34 16 41 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.04 1.64 7.14 -2.39 -0.02 1.62 16 44 H 0.03 1.32 7.51 -2.39 -0.02 1.30 16 45 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 47 H 0.13 4.39 6.42 -2.91 -0.02 4.37 16 Total: -1.00 -73.42 382.72 2.27 -71.14 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.49 Total: 21.67 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 5.63 Total: -13.72 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -3.15 Total: -89.60 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.60 Total: -35.34 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -73.42 2.27 -71.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336788102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.247 kcal (2) G-P(sol) polarization free energy of solvation -73.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds