Wall clock time and date at job start Tue Mar 31 2020 18:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47095 * 2 1 4 4 H 1.09003 * 109.46830 * 305.00029 * 3 2 1 5 5 C 1.52998 * 109.47060 * 185.00228 * 3 2 1 6 6 O 1.42905 * 109.47370 * 305.14599 * 5 3 2 7 7 N 1.46502 * 109.47067 * 65.00147 * 3 2 1 8 8 C 1.46500 * 119.99883 * 54.11642 * 7 3 2 9 9 C 1.34775 * 119.99790 * 234.11189 * 7 3 2 10 10 O 1.21354 * 120.00206 * 354.94914 * 9 7 3 11 11 C 1.49358 * 119.99755 * 174.94262 * 9 7 3 12 12 O 1.21370 * 119.99821 * 5.27319 * 11 9 7 13 13 N 1.34773 * 119.99903 * 185.26843 * 11 9 7 14 14 C 1.39723 * 119.99922 * 184.61641 * 13 11 9 15 15 C 1.38924 * 120.07546 * 324.40786 * 14 13 11 16 16 C 1.38097 * 119.92475 * 180.30056 * 15 14 13 17 17 C 1.38297 * 120.07153 * 359.41831 * 16 15 14 18 18 C 1.50702 * 119.92248 * 180.27851 * 17 16 15 19 19 C 1.50696 * 109.47347 * 270.32387 * 18 17 16 20 20 H 1.08000 * 119.99996 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00183 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99631 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00121 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47201 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47324 * 119.99788 * 23 21 19 26 26 H 1.48500 * 109.46940 * 240.00117 * 23 21 19 27 27 C 1.38295 * 120.15348 * 0.60599 * 17 16 15 28 28 C 1.38096 * 120.07441 * 359.67274 * 27 17 16 29 29 H 1.09005 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47170 * 299.99853 * 1 2 3 31 31 H 1.08996 * 109.47626 * 60.00292 * 1 2 3 32 32 H 1.09001 * 109.47170 * 240.00146 * 2 1 3 33 33 H 1.09000 * 109.47355 * 120.00412 * 2 1 3 34 34 H 1.08998 * 109.47258 * 65.14437 * 5 3 2 35 35 H 1.09002 * 109.47144 * 185.14456 * 5 3 2 36 36 H 0.96694 * 113.99915 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.46757 * 240.36574 * 8 7 3 38 38 H 1.09003 * 109.46879 * 0.36169 * 8 7 3 39 39 H 1.09000 * 109.47154 * 120.36512 * 8 7 3 40 40 H 0.97004 * 120.00233 * 4.61318 * 13 11 9 41 41 H 1.08004 * 120.04004 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.96413 * 179.71991 * 16 15 14 43 43 H 1.09002 * 109.46860 * 30.32351 * 18 17 16 44 44 H 1.09005 * 109.47095 * 150.31893 * 18 17 16 45 45 H 0.97008 * 119.99887 * 179.97438 * 22 21 19 46 46 H 1.07997 * 119.96065 * 179.70054 * 27 17 16 47 47 H 1.08004 * 120.03802 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1292 0.6376 0.9100 7 7 1.6524 2.0975 1.2518 8 6 2.0045 1.4883 2.5368 9 6 0.9720 3.2605 1.2213 10 8 0.7602 3.8119 0.1612 11 6 0.4786 3.8705 2.4922 12 8 0.7715 3.3710 3.5588 13 7 -0.2919 4.9757 2.4545 14 6 -0.6735 5.6021 3.6436 15 6 -0.9466 4.8424 4.7742 16 6 -1.3296 5.4644 5.9462 17 6 -1.4298 6.8427 5.9985 18 6 -1.8419 7.5184 7.2810 19 6 -3.3425 7.6523 7.3185 20 1 -3.9382 7.2846 6.4962 21 6 -3.9549 8.2443 8.4028 22 7 -3.2294 8.6926 9.4039 23 14 -5.8149 8.4097 8.4496 24 1 -6.3947 7.8315 7.2107 25 1 -6.3469 7.6841 9.6310 26 1 -6.1820 9.8455 8.5439 27 6 -1.1592 7.6021 4.8748 28 6 -0.7812 6.9862 3.6980 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8497 1.0401 -1.0971 35 1 3.9357 2.4652 -0.0341 36 1 5.0950 0.5934 0.8919 37 1 1.0952 1.2704 3.0969 38 1 2.5540 0.5632 2.3619 39 1 2.6264 2.1779 3.1076 40 1 -0.5814 5.3363 1.6017 41 1 -0.8637 3.7662 4.7355 42 1 -1.5463 4.8741 6.8243 43 1 -1.5092 6.9207 8.1297 44 1 -1.3874 8.5077 7.3328 45 1 -3.6603 9.1094 10.1666 46 1 -1.2431 8.6779 4.9178 47 1 -0.5697 7.5798 2.8208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336788103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:48 Heat of formation + Delta-G solvation = -90.254296 kcal Electronic energy + Delta-G solvation = -28427.249664 eV Core-core repulsion = 24382.308121 eV Total energy + Delta-G solvation = -4044.941543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23598 -39.67988 -38.20476 -37.77421 -36.03103 -34.96262 -33.20031 -32.97618 -30.58080 -30.35002 -29.54636 -27.34517 -26.77192 -25.03416 -23.90514 -22.94182 -22.42027 -21.10658 -20.16483 -19.72884 -18.43803 -17.82077 -17.27777 -16.68327 -16.49193 -16.30817 -15.80777 -15.27538 -14.95260 -14.86311 -14.55510 -14.35897 -14.20832 -13.84923 -13.61782 -13.16821 -13.07774 -12.96403 -12.88412 -12.81816 -12.60943 -12.29810 -12.04634 -11.68385 -11.61893 -11.43904 -11.38030 -11.28773 -11.17243 -10.84101 -10.58404 -10.50036 -10.39309 -10.01224 -9.66742 -9.35469 -9.27791 -9.04117 -8.43229 -8.33131 -7.47255 -6.04294 -4.08268 1.13825 1.93607 2.01785 2.20018 3.06693 3.29486 3.30894 3.37203 3.42254 3.76269 4.13482 4.30054 4.37673 4.51239 4.54010 4.72123 4.84317 4.94981 5.03887 5.22169 5.29860 5.33042 5.40196 5.40952 5.52261 5.55874 5.60281 5.73840 5.78353 5.89139 5.97196 6.00531 6.03747 6.10779 6.15670 6.59729 6.62257 6.77760 6.83645 7.12035 7.12543 7.15941 7.24529 7.49205 7.55398 7.66380 7.84116 7.91613 7.93195 8.31476 8.97324 9.55613 11.05363 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.002067 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.783668 B =13540.673711 C =13628.944104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C 0.138 3.862 4 H 0.114 0.886 5 C 0.067 3.933 6 O -0.566 6.566 7 N -0.574 5.574 8 C 0.087 3.913 9 C 0.509 3.491 10 O -0.527 6.527 11 C 0.501 3.499 12 O -0.496 6.496 13 N -0.636 5.636 14 C 0.094 3.906 15 C -0.113 4.113 16 C -0.110 4.110 17 C -0.037 4.037 18 C 0.047 3.953 19 C -0.510 4.510 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.284 1.284 27 C -0.109 4.109 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.379 0.621 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.416 0.584 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.261 0.739 46 H 0.124 0.876 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.960 -16.673 -20.926 30.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C 0.035 3.965 4 H 0.131 0.869 5 C -0.012 4.012 6 O -0.372 6.372 7 N -0.307 5.307 8 C -0.054 4.054 9 C 0.291 3.709 10 O -0.404 6.404 11 C 0.282 3.718 12 O -0.370 6.370 13 N -0.282 5.282 14 C 0.002 3.998 15 C -0.133 4.133 16 C -0.128 4.128 17 C -0.037 4.037 18 C 0.010 3.990 19 C -0.549 4.549 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.128 4.128 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.227 0.773 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.142 0.858 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.449 -16.765 -20.427 29.651 hybrid contribution -0.545 0.484 -0.483 0.875 sum 12.904 -16.282 -20.910 29.476 Atomic orbital electron populations 1.21771 0.95321 1.01844 1.02141 1.21803 0.96365 0.94879 1.03543 1.21440 0.92945 0.94608 0.87513 0.86866 1.22558 0.93344 0.94648 0.90628 1.86482 1.25533 1.71960 1.53215 1.47690 1.53250 1.21259 1.08548 1.22081 1.01490 0.99377 0.82483 1.20179 0.79492 0.81855 0.89359 1.90739 1.57185 1.60993 1.31467 1.20042 0.80044 0.82069 0.89637 1.90785 1.55628 1.59855 1.30771 1.43011 1.48792 1.26874 1.09519 1.17520 1.04543 0.91505 0.86199 1.21101 0.99835 0.99973 0.92372 1.21016 0.99779 0.94698 0.97339 1.20776 0.91909 0.93425 0.97602 1.18376 0.96530 0.95657 0.88460 1.21096 0.90869 1.38746 1.04156 0.92381 1.25021 0.98392 0.95445 0.95553 1.69968 1.35258 1.39975 1.08075 0.86481 0.85426 0.77757 0.78061 1.19667 1.20943 1.20961 1.20907 0.99980 1.00088 0.91797 1.20802 1.03939 0.91890 0.98876 0.92367 0.92712 0.92671 0.90666 0.90222 0.92293 0.93095 0.77338 0.91328 0.89328 0.91299 0.74703 0.85394 0.85905 0.95209 0.95233 0.92891 0.85800 0.86537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.80 37.16 0.36 -0.78 16 2 C -0.13 -0.85 4.99 -26.73 -0.13 -0.98 16 3 C 0.14 1.08 2.52 -67.93 -0.17 0.91 16 4 H 0.11 0.96 6.95 -51.93 -0.36 0.60 16 5 C 0.07 0.40 6.84 37.16 0.25 0.65 16 6 O -0.57 -3.19 10.36 -35.23 -0.36 -3.56 16 7 N -0.57 -5.76 2.21 -174.47 -0.39 -6.15 16 8 C 0.09 0.85 7.83 59.85 0.47 1.32 16 9 C 0.51 6.26 7.73 -11.63 -0.09 6.17 16 10 O -0.53 -7.11 15.86 5.49 0.09 -7.03 16 11 C 0.50 6.96 7.65 -11.63 -0.09 6.87 16 12 O -0.50 -7.68 10.72 5.48 0.06 -7.62 16 13 N -0.64 -8.82 5.31 -10.30 -0.05 -8.88 16 14 C 0.09 1.56 6.29 -83.75 -0.53 1.04 16 15 C -0.11 -2.04 8.69 -39.38 -0.34 -2.38 16 16 C -0.11 -2.19 9.69 -39.61 -0.38 -2.58 16 17 C -0.04 -0.79 5.07 -104.58 -0.53 -1.32 16 18 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 19 C -0.51 -14.21 9.09 -34.44 -0.31 -14.52 16 20 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 23 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16 28 C -0.14 -2.22 9.97 -39.38 -0.39 -2.62 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.50 7.75 -51.93 -0.40 0.09 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.57 6.21 -51.93 -0.32 0.25 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.38 0.70 9.12 45.56 0.42 1.11 16 37 H 0.07 0.73 7.10 -51.93 -0.37 0.37 16 38 H 0.09 0.75 4.79 -51.93 -0.25 0.50 16 39 H 0.07 0.76 7.38 -51.93 -0.38 0.37 16 40 H 0.42 4.92 8.32 -40.82 -0.34 4.58 16 41 H 0.13 2.23 6.26 -52.48 -0.33 1.90 16 42 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 44 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 46 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 47 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -32.39 385.99 -7.75 -40.13 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.10 Total: 4.54 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.51 Total: -8.14 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.30 Total: -40.63 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.22 Total: -18.21 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.39 -7.75 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336788103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.122 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds