Wall clock time and date at job start Tue Mar 31 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47095 * 2 1 4 4 H 1.09003 * 109.46830 * 305.00029 * 3 2 1 5 5 C 1.52998 * 109.47060 * 185.00228 * 3 2 1 6 6 O 1.42905 * 109.47370 * 305.14599 * 5 3 2 7 7 N 1.46502 * 109.47067 * 65.00147 * 3 2 1 8 8 C 1.46500 * 119.99883 * 54.11642 * 7 3 2 9 9 C 1.34775 * 119.99790 * 234.11189 * 7 3 2 10 10 O 1.21354 * 120.00206 * 354.94914 * 9 7 3 11 11 C 1.49358 * 119.99755 * 174.94262 * 9 7 3 12 12 O 1.21370 * 119.99821 * 5.27319 * 11 9 7 13 13 N 1.34773 * 119.99903 * 185.26843 * 11 9 7 14 14 C 1.39723 * 119.99922 * 184.61641 * 13 11 9 15 15 C 1.38924 * 120.07546 * 324.40786 * 14 13 11 16 16 C 1.38097 * 119.92475 * 180.30056 * 15 14 13 17 17 C 1.38297 * 120.07153 * 359.41831 * 16 15 14 18 18 C 1.50702 * 119.92248 * 180.27851 * 17 16 15 19 19 C 1.50696 * 109.47347 * 270.32387 * 18 17 16 20 20 H 1.08000 * 119.99996 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00183 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99631 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00121 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47201 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47324 * 119.99788 * 23 21 19 26 26 H 1.48500 * 109.46940 * 240.00117 * 23 21 19 27 27 C 1.38295 * 120.15348 * 0.60599 * 17 16 15 28 28 C 1.38096 * 120.07441 * 359.67274 * 27 17 16 29 29 H 1.09005 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47170 * 299.99853 * 1 2 3 31 31 H 1.08996 * 109.47626 * 60.00292 * 1 2 3 32 32 H 1.09001 * 109.47170 * 240.00146 * 2 1 3 33 33 H 1.09000 * 109.47355 * 120.00412 * 2 1 3 34 34 H 1.08998 * 109.47258 * 65.14437 * 5 3 2 35 35 H 1.09002 * 109.47144 * 185.14456 * 5 3 2 36 36 H 0.96694 * 113.99915 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.46757 * 240.36574 * 8 7 3 38 38 H 1.09003 * 109.46879 * 0.36169 * 8 7 3 39 39 H 1.09000 * 109.47154 * 120.36512 * 8 7 3 40 40 H 0.97004 * 120.00233 * 4.61318 * 13 11 9 41 41 H 1.08004 * 120.04004 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.96413 * 179.71991 * 16 15 14 43 43 H 1.09002 * 109.46860 * 30.32351 * 18 17 16 44 44 H 1.09005 * 109.47095 * 150.31893 * 18 17 16 45 45 H 0.97008 * 119.99887 * 179.97438 * 22 21 19 46 46 H 1.07997 * 119.96065 * 179.70054 * 27 17 16 47 47 H 1.08004 * 120.03802 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 8 4.1292 0.6376 0.9100 7 7 1.6524 2.0975 1.2518 8 6 2.0045 1.4883 2.5368 9 6 0.9720 3.2605 1.2213 10 8 0.7602 3.8119 0.1612 11 6 0.4786 3.8705 2.4922 12 8 0.7715 3.3710 3.5588 13 7 -0.2919 4.9757 2.4545 14 6 -0.6735 5.6021 3.6436 15 6 -0.9466 4.8424 4.7742 16 6 -1.3296 5.4644 5.9462 17 6 -1.4298 6.8427 5.9985 18 6 -1.8419 7.5184 7.2810 19 6 -3.3425 7.6523 7.3185 20 1 -3.9382 7.2846 6.4962 21 6 -3.9549 8.2443 8.4028 22 7 -3.2294 8.6926 9.4039 23 14 -5.8149 8.4097 8.4496 24 1 -6.3947 7.8315 7.2107 25 1 -6.3469 7.6841 9.6310 26 1 -6.1820 9.8455 8.5439 27 6 -1.1592 7.6021 4.8748 28 6 -0.7812 6.9862 3.6980 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8497 1.0401 -1.0971 35 1 3.9357 2.4652 -0.0341 36 1 5.0950 0.5934 0.8919 37 1 1.0952 1.2704 3.0969 38 1 2.5540 0.5632 2.3619 39 1 2.6264 2.1779 3.1076 40 1 -0.5814 5.3363 1.6017 41 1 -0.8637 3.7662 4.7355 42 1 -1.5463 4.8741 6.8243 43 1 -1.5092 6.9207 8.1297 44 1 -1.3874 8.5077 7.3328 45 1 -3.6603 9.1094 10.1666 46 1 -1.2431 8.6779 4.9178 47 1 -0.5697 7.5798 2.8208 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336788103.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:47 Heat of formation + Delta-G solvation = -111.680635 kcal Electronic energy + Delta-G solvation = -28428.178780 eV Core-core repulsion = 24382.308121 eV Total energy + Delta-G solvation = -4045.870659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.28739 -40.78236 -39.42986 -38.59757 -36.83679 -36.13574 -34.99282 -33.85792 -32.30484 -31.82401 -30.13620 -28.84366 -27.85305 -26.25525 -24.88241 -24.25220 -23.85779 -22.30430 -21.47963 -20.59173 -19.33677 -18.61441 -18.50763 -18.32351 -17.56130 -17.44039 -16.86970 -16.64769 -16.21469 -15.96778 -15.61715 -15.46734 -15.22510 -14.74265 -14.68204 -14.51899 -14.44737 -14.29419 -13.92943 -13.70875 -13.62477 -13.41361 -13.29714 -13.20292 -12.98783 -12.66034 -12.60887 -12.42345 -12.25867 -12.07144 -11.96823 -11.76926 -11.63569 -11.51318 -11.09640 -10.92859 -10.60539 -10.47546 -9.86297 -9.79720 -8.98725 -8.18663 -6.32439 0.00056 0.53691 0.61359 1.16256 1.40121 1.40791 1.54175 1.99317 2.33131 2.40340 2.94137 3.11408 3.16117 3.37096 3.69305 3.97131 4.02074 4.10806 4.18128 4.26530 4.35705 4.46188 4.49576 4.53163 4.58017 4.63465 4.63754 4.71402 4.72026 4.90799 5.02967 5.08398 5.11809 5.14247 5.24624 5.29574 5.35081 5.37200 5.38754 5.41145 5.55267 5.75636 5.86544 6.04945 6.07265 6.13972 6.22341 6.57382 6.80494 6.81642 6.91649 7.36003 8.90004 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.002067 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.783668 B =13540.673711 C =13628.944104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.130 3.870 4 H 0.108 0.892 5 C 0.073 3.927 6 O -0.579 6.579 7 N -0.565 5.565 8 C 0.094 3.906 9 C 0.510 3.490 10 O -0.540 6.540 11 C 0.500 3.500 12 O -0.513 6.513 13 N -0.630 5.630 14 C 0.108 3.892 15 C -0.115 4.115 16 C -0.118 4.118 17 C -0.068 4.068 18 C 0.056 3.944 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.429 0.571 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.002 0.998 44 H 0.008 0.992 45 H 0.265 0.735 46 H 0.128 0.872 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.248 -17.868 -23.680 32.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.028 3.972 4 H 0.126 0.874 5 C -0.006 4.006 6 O -0.387 6.387 7 N -0.297 5.297 8 C -0.047 4.047 9 C 0.293 3.707 10 O -0.419 6.419 11 C 0.282 3.718 12 O -0.388 6.388 13 N -0.277 5.277 14 C 0.015 3.985 15 C -0.135 4.135 16 C -0.137 4.137 17 C -0.068 4.068 18 C 0.019 3.981 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.132 4.132 28 C -0.142 4.142 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.247 0.753 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.268 0.732 41 H 0.152 0.848 42 H 0.134 0.866 43 H 0.021 0.979 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.146 0.854 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.770 -17.989 -23.214 32.436 hybrid contribution -0.516 0.747 0.302 0.957 sum 13.254 -17.242 -22.912 31.590 Atomic orbital electron populations 1.21768 0.96078 1.02158 1.01040 1.21772 0.95579 0.94078 1.04409 1.21717 0.94611 0.94923 0.85970 0.87388 1.22465 0.91694 0.94511 0.91928 1.86416 1.27309 1.71732 1.53292 1.47806 1.51881 1.20369 1.09625 1.22004 1.00879 0.99663 0.82181 1.19838 0.80040 0.82557 0.88313 1.90737 1.58138 1.61578 1.31403 1.20439 0.79532 0.81668 0.90158 1.90786 1.56115 1.60233 1.31669 1.42950 1.48772 1.26857 1.09122 1.17588 1.02566 0.91722 0.86600 1.21128 0.99783 1.00339 0.92251 1.20958 1.00511 0.94105 0.98130 1.20474 0.95225 0.94210 0.96896 1.18112 0.95631 0.94380 0.89966 1.21403 0.92136 1.38623 1.04173 0.92643 1.25933 1.03503 0.94988 0.95091 1.70088 1.37405 1.40766 1.08768 0.85386 0.79263 0.78032 0.78308 1.18926 1.20313 1.20113 1.20980 0.99950 1.00307 0.91961 1.21056 1.02058 0.92025 0.99012 0.91396 0.94743 0.92783 0.88504 0.90521 0.89683 0.94030 0.75280 0.92382 0.87664 0.92480 0.73198 0.84833 0.86595 0.97937 0.97404 0.92590 0.85379 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.80 71.98 0.71 -1.34 16 2 C -0.12 -1.31 4.99 30.59 0.15 -1.16 16 3 C 0.13 1.76 2.52 44.99 0.11 1.87 16 4 H 0.11 1.62 6.95 -2.39 -0.02 1.61 16 5 C 0.07 0.67 6.84 71.98 0.49 1.16 16 6 O -0.58 -5.00 10.36 -148.98 -1.54 -6.54 16 7 N -0.56 -10.54 2.21 -824.28 -1.83 -12.37 16 8 C 0.09 1.75 7.83 127.77 1.00 2.75 16 9 C 0.51 11.89 7.73 87.24 0.67 12.57 16 10 O -0.54 -13.71 15.86 -3.26 -0.05 -13.76 16 11 C 0.50 13.27 7.65 87.24 0.67 13.94 16 12 O -0.51 -15.52 10.72 -3.31 -0.04 -15.55 16 13 N -0.63 -16.25 5.31 -304.85 -1.62 -17.87 16 14 C 0.11 3.42 6.29 38.21 0.24 3.66 16 15 C -0.12 -4.12 8.69 22.40 0.19 -3.93 16 16 C -0.12 -4.87 9.69 22.25 0.22 -4.65 16 17 C -0.07 -3.02 5.07 -19.84 -0.10 -3.12 16 18 C 0.06 3.02 5.10 29.10 0.15 3.17 16 19 C -0.53 -30.11 9.09 25.60 0.23 -29.88 16 20 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 21 C 0.00 0.17 5.46 84.66 0.46 0.63 16 22 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 23 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 C -0.11 -4.31 9.69 22.25 0.22 -4.10 16 28 C -0.12 -3.76 9.97 22.40 0.22 -3.53 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.03 0.59 7.75 -2.39 -0.02 0.57 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.92 6.21 -2.39 -0.01 0.90 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.40 0.38 9.12 -74.06 -0.68 -0.29 16 37 H 0.06 1.21 7.10 -2.39 -0.02 1.20 16 38 H 0.11 1.60 4.79 -2.39 -0.01 1.59 16 39 H 0.06 1.21 7.38 -2.39 -0.02 1.19 16 40 H 0.43 9.06 8.32 -92.71 -0.77 8.29 16 41 H 0.13 4.61 6.26 -2.91 -0.02 4.60 16 42 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.00 0.13 8.09 -2.39 -0.02 0.11 16 44 H 0.01 0.44 8.08 -2.38 -0.02 0.42 16 45 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 46 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 47 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -71.00 385.99 2.43 -68.57 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.44 Total: 18.96 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 5.64 Total: -11.97 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.16 Total: -86.27 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.63 Total: -35.85 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.00 2.43 -68.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336788103.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.114 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds