Wall clock time and date at job start Tue Mar 31 2020 18:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 H 1.08996 * 109.47331 * 54.99984 * 3 2 1 5 5 C 1.53008 * 109.47059 * 174.99493 * 3 2 1 6 6 N 1.46493 * 109.47044 * 183.63119 * 5 3 2 7 7 C 1.34780 * 120.00066 * 184.80330 * 6 5 3 8 8 O 1.21362 * 119.99981 * 0.02562 * 7 6 5 9 9 C 1.49350 * 120.00020 * 180.02562 * 7 6 5 10 10 O 1.21375 * 120.00179 * 0.02562 * 9 7 6 11 11 N 1.34782 * 119.99792 * 180.02562 * 9 7 6 12 12 C 1.39719 * 119.99866 * 185.19664 * 11 9 7 13 13 C 1.38929 * 120.07817 * 214.11146 * 12 11 9 14 14 C 1.38098 * 119.92812 * 179.76940 * 13 12 11 15 15 C 1.38296 * 120.07319 * 0.48949 * 14 13 12 16 16 C 1.50703 * 119.92565 * 179.76722 * 15 14 13 17 17 C 1.50701 * 109.46764 * 270.02057 * 16 15 14 18 18 H 1.07996 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99693 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00099 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47298 * 89.99502 * 21 19 17 23 23 H 1.48502 * 109.46645 * 209.99672 * 21 19 17 24 24 H 1.48502 * 109.46822 * 329.99291 * 21 19 17 25 25 C 1.38299 * 120.15184 * 359.78598 * 15 14 13 26 26 C 1.38093 * 120.07358 * 359.95536 * 25 15 14 27 27 O 1.42897 * 109.46924 * 294.99317 * 3 2 1 28 28 C 1.42910 * 113.99805 * 139.47927 * 27 3 2 29 29 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47465 * 300.00390 * 1 2 3 31 31 H 1.09011 * 109.47136 * 60.00434 * 1 2 3 32 32 H 1.08995 * 109.47465 * 239.99610 * 2 1 3 33 33 H 1.08999 * 109.46713 * 119.99552 * 2 1 3 34 34 H 1.09000 * 109.47308 * 303.63628 * 5 3 2 35 35 H 1.09005 * 109.46987 * 63.63520 * 5 3 2 36 36 H 0.97000 * 120.00442 * 4.80723 * 6 5 3 37 37 H 0.96997 * 120.00166 * 5.19307 * 11 9 7 38 38 H 1.08002 * 120.03642 * 0.02562 * 13 12 11 39 39 H 1.07995 * 119.96859 * 180.25142 * 14 13 12 40 40 H 1.08996 * 109.46620 * 30.01770 * 16 15 14 41 41 H 1.08997 * 109.47087 * 150.01727 * 16 15 14 42 42 H 0.97000 * 120.00379 * 180.02562 * 20 19 17 43 43 H 1.07998 * 119.96167 * 179.97438 * 25 15 14 44 44 H 1.08005 * 120.03447 * 179.97438 * 26 25 15 45 45 H 1.08999 * 109.46674 * 63.42355 * 28 27 3 46 46 H 1.08993 * 109.46642 * 303.42730 * 28 27 3 47 47 H 1.08998 * 109.47075 * 183.42571 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1259 6 7 4.0459 2.8253 0.2131 7 6 5.3697 3.0778 0.2328 8 8 6.1631 2.1611 0.1779 9 6 5.8601 4.4856 0.3223 10 8 5.0666 5.4023 0.3777 11 7 7.1840 4.7380 0.3416 12 6 7.6435 6.0434 0.5344 13 6 8.8026 6.4741 -0.0988 14 6 9.2514 7.7664 0.0902 15 6 8.5538 8.6284 0.9167 16 6 9.0494 10.0363 1.1247 17 6 9.9893 10.0691 2.3022 18 1 10.2057 9.1613 2.8458 19 6 10.5721 11.2582 2.6862 20 7 10.3081 12.3636 2.0245 21 14 11.7377 11.2987 4.1454 22 1 13.1259 11.0565 3.6769 23 1 11.6619 12.6283 4.8025 24 1 11.3518 10.2437 5.1166 25 6 7.4027 8.2011 1.5531 26 6 6.9455 6.9118 1.3643 27 8 1.6620 2.0813 -1.2211 28 6 1.2271 3.4330 -1.0596 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8559 0.9007 1.0246 35 1 4.0021 0.9618 -0.7483 36 1 3.4118 3.5580 0.2567 37 1 7.8177 4.0136 0.2216 38 1 9.3499 5.8004 -0.7414 39 1 10.1501 8.1032 -0.4049 40 1 9.5750 10.3721 0.2308 41 1 8.2025 10.6948 1.3173 42 1 10.7184 13.2002 2.2943 43 1 6.8606 8.8766 2.1982 44 1 6.0466 6.5787 1.8620 45 1 2.0513 4.0369 -0.6801 46 1 0.3975 3.4657 -0.3534 47 1 0.9008 3.8271 -2.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338048095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:45 Heat of formation + Delta-G solvation = -99.037029 kcal Electronic energy + Delta-G solvation = -27522.957249 eV Core-core repulsion = 23477.634858 eV Total energy + Delta-G solvation = -4045.322391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12011 -39.71251 -38.81771 -37.99982 -35.56762 -34.76860 -33.93106 -33.03638 -30.62433 -30.40067 -29.63261 -27.32833 -26.80997 -25.19436 -23.69550 -22.63660 -22.40752 -21.91738 -20.68747 -20.07649 -18.95094 -17.54264 -17.42582 -16.72857 -16.31950 -16.19311 -16.12830 -15.62022 -15.10951 -14.97903 -14.73588 -14.41863 -14.28464 -14.12436 -13.98396 -13.83413 -13.25985 -13.14107 -12.92539 -12.68997 -12.62982 -12.11602 -12.06108 -11.92726 -11.84363 -11.62742 -11.43515 -11.31262 -11.25523 -10.85394 -10.62107 -10.41196 -10.23815 -10.09456 -9.82283 -9.63971 -9.47893 -9.32945 -8.44396 -8.37582 -7.50370 -6.05572 -4.09870 1.04306 1.93376 1.97972 2.13889 3.02334 3.19033 3.29535 3.35933 3.36667 3.40044 4.07814 4.17839 4.34221 4.37716 4.45493 4.51186 4.75415 4.84144 4.90225 4.98592 5.02023 5.19664 5.28238 5.28351 5.36127 5.37329 5.45046 5.45465 5.56440 5.77111 5.78147 5.79947 5.93305 5.98899 6.11796 6.50808 6.55797 6.63012 6.71525 6.79077 7.08718 7.12767 7.22715 7.45571 7.50394 7.61720 7.81442 7.84703 7.89994 8.29602 8.95423 9.54129 11.04016 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.001798 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.280483 B =15565.614144 C =15819.855862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.075 3.925 4 H 0.072 0.928 5 C 0.097 3.903 6 N -0.701 5.701 7 C 0.511 3.489 8 O -0.517 6.517 9 C 0.502 3.498 10 O -0.504 6.504 11 N -0.633 5.633 12 C 0.095 3.905 13 C -0.135 4.135 14 C -0.108 4.108 15 C -0.036 4.036 16 C 0.047 3.953 17 C -0.513 4.513 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.108 4.108 26 C -0.113 4.113 27 O -0.377 6.377 28 C 0.025 3.975 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.410 0.590 37 H 0.418 0.582 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.042 0.958 46 H 0.046 0.954 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.218 -23.731 -4.908 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.017 3.983 4 H 0.090 0.910 5 C -0.026 4.026 6 N -0.357 5.357 7 C 0.292 3.708 8 O -0.392 6.392 9 C 0.283 3.717 10 O -0.379 6.379 11 N -0.279 5.279 12 C 0.003 3.997 13 C -0.155 4.155 14 C -0.126 4.126 15 C -0.037 4.037 16 C 0.010 3.990 17 C -0.551 4.551 18 H 0.076 0.924 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.127 4.127 26 C -0.133 4.133 27 O -0.295 6.295 28 C -0.071 4.071 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.248 0.752 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.201 -23.686 -5.076 30.300 hybrid contribution 0.721 0.272 1.009 1.269 sum -17.480 -23.415 -4.067 29.502 Atomic orbital electron populations 1.21718 0.94820 1.02032 1.02242 1.21613 0.97026 0.93926 1.03428 1.22498 0.92343 0.95516 0.87966 0.90985 1.22113 0.94422 0.82429 1.03649 1.45842 1.06727 1.10038 1.73065 1.20093 0.83387 0.89439 0.77892 1.90776 1.54752 1.45982 1.47720 1.20063 0.83581 0.89264 0.78813 1.90794 1.54619 1.45551 1.46904 1.43024 1.06604 1.09476 1.68822 1.17498 0.97296 0.84073 1.00793 1.20791 0.96900 0.96932 1.00829 1.20920 0.99984 0.92286 0.99424 1.20784 0.92147 0.98902 0.91853 1.18375 0.96604 0.86330 0.97698 1.21059 1.26335 0.94360 1.13333 0.92416 1.25010 0.96767 0.95576 0.96943 1.69955 1.43841 0.99121 1.40313 0.86535 0.81178 0.77368 0.82618 1.20579 1.21165 1.19817 1.20994 0.96823 0.94907 0.99929 1.20954 1.00252 0.94176 0.97940 1.87972 1.85446 1.26157 1.29973 1.22971 0.98282 0.82722 1.03141 0.92319 0.92884 0.91920 0.90478 0.90237 0.89898 0.89616 0.75202 0.74521 0.86432 0.85708 0.95187 0.95178 0.92823 0.85842 0.85960 0.93943 0.93500 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.81 37.15 0.36 -0.31 16 2 C -0.12 -0.57 5.64 -26.73 -0.15 -0.72 16 3 C 0.08 0.44 2.34 -26.73 -0.06 0.38 16 4 H 0.07 0.35 7.64 -51.93 -0.40 -0.04 16 5 C 0.10 0.71 5.35 -4.04 -0.02 0.69 16 6 N -0.70 -6.48 5.44 -60.76 -0.33 -6.81 16 7 C 0.51 6.05 7.89 -11.63 -0.09 5.96 16 8 O -0.52 -6.94 16.48 5.49 0.09 -6.84 16 9 C 0.50 6.80 7.62 -11.63 -0.09 6.71 16 10 O -0.50 -7.79 14.23 5.48 0.08 -7.71 16 11 N -0.63 -8.59 5.32 -10.30 -0.05 -8.65 16 12 C 0.10 1.56 6.26 -83.75 -0.52 1.04 16 13 C -0.13 -2.18 9.97 -39.38 -0.39 -2.57 16 14 C -0.11 -2.03 9.69 -39.61 -0.38 -2.42 16 15 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 16 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 17 C -0.51 -14.19 9.09 -34.44 -0.31 -14.50 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.35 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C -0.11 -2.13 9.69 -39.61 -0.38 -2.52 16 26 C -0.11 -2.02 8.65 -39.38 -0.34 -2.36 16 27 O -0.38 -2.85 9.82 -35.23 -0.35 -3.20 16 28 C 0.03 0.15 10.61 101.05 1.07 1.23 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.34 7.82 -51.92 -0.41 -0.07 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 3.48 5.38 -40.82 -0.22 3.26 16 37 H 0.42 4.77 8.30 -40.82 -0.34 4.43 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 44 H 0.12 2.09 6.49 -52.48 -0.34 1.74 16 45 H 0.04 0.27 5.78 -51.93 -0.30 -0.03 16 46 H 0.05 0.22 8.04 -51.93 -0.42 -0.20 16 47 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 396.50 15.07 5.98 5.98 Total: -1.00 -32.30 396.50 -7.99 -40.29 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.03 Total: 4.14 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.09 Total: -8.12 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.35 Total: -40.88 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.18 Total: -17.75 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.30 -7.99 -40.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338048095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.749 kcal (2) G-P(sol) polarization free energy of solvation -32.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds