Wall clock time and date at job start Tue Mar 31 2020 18:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47015 * 2 1 4 4 H 1.08996 * 109.47331 * 54.99984 * 3 2 1 5 5 C 1.53008 * 109.47059 * 174.99493 * 3 2 1 6 6 N 1.46493 * 109.47044 * 183.63119 * 5 3 2 7 7 C 1.34780 * 120.00066 * 184.80330 * 6 5 3 8 8 O 1.21362 * 119.99981 * 0.02562 * 7 6 5 9 9 C 1.49350 * 120.00020 * 180.02562 * 7 6 5 10 10 O 1.21375 * 120.00179 * 0.02562 * 9 7 6 11 11 N 1.34782 * 119.99792 * 180.02562 * 9 7 6 12 12 C 1.39719 * 119.99866 * 185.19664 * 11 9 7 13 13 C 1.38929 * 120.07817 * 214.11146 * 12 11 9 14 14 C 1.38098 * 119.92812 * 179.76940 * 13 12 11 15 15 C 1.38296 * 120.07319 * 0.48949 * 14 13 12 16 16 C 1.50703 * 119.92565 * 179.76722 * 15 14 13 17 17 C 1.50701 * 109.46764 * 270.02057 * 16 15 14 18 18 H 1.07996 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99693 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00099 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99923 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47298 * 89.99502 * 21 19 17 23 23 H 1.48502 * 109.46645 * 209.99672 * 21 19 17 24 24 H 1.48502 * 109.46822 * 329.99291 * 21 19 17 25 25 C 1.38299 * 120.15184 * 359.78598 * 15 14 13 26 26 C 1.38093 * 120.07358 * 359.95536 * 25 15 14 27 27 O 1.42897 * 109.46924 * 294.99317 * 3 2 1 28 28 C 1.42910 * 113.99805 * 139.47927 * 27 3 2 29 29 H 1.09005 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47465 * 300.00390 * 1 2 3 31 31 H 1.09011 * 109.47136 * 60.00434 * 1 2 3 32 32 H 1.08995 * 109.47465 * 239.99610 * 2 1 3 33 33 H 1.08999 * 109.46713 * 119.99552 * 2 1 3 34 34 H 1.09000 * 109.47308 * 303.63628 * 5 3 2 35 35 H 1.09005 * 109.46987 * 63.63520 * 5 3 2 36 36 H 0.97000 * 120.00442 * 4.80723 * 6 5 3 37 37 H 0.96997 * 120.00166 * 5.19307 * 11 9 7 38 38 H 1.08002 * 120.03642 * 0.02562 * 13 12 11 39 39 H 1.07995 * 119.96859 * 180.25142 * 14 13 12 40 40 H 1.08996 * 109.46620 * 30.01770 * 16 15 14 41 41 H 1.08997 * 109.47087 * 150.01727 * 16 15 14 42 42 H 0.97000 * 120.00379 * 180.02562 * 20 19 17 43 43 H 1.07998 * 119.96167 * 179.97438 * 25 15 14 44 44 H 1.08005 * 120.03447 * 179.97438 * 26 25 15 45 45 H 1.08999 * 109.46674 * 63.42355 * 28 27 3 46 46 H 1.08993 * 109.46642 * 303.42730 * 28 27 3 47 47 H 1.08998 * 109.47075 * 183.42571 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1259 6 7 4.0459 2.8253 0.2131 7 6 5.3697 3.0778 0.2328 8 8 6.1631 2.1611 0.1779 9 6 5.8601 4.4856 0.3223 10 8 5.0666 5.4023 0.3777 11 7 7.1840 4.7380 0.3416 12 6 7.6435 6.0434 0.5344 13 6 8.8026 6.4741 -0.0988 14 6 9.2514 7.7664 0.0902 15 6 8.5538 8.6284 0.9167 16 6 9.0494 10.0363 1.1247 17 6 9.9893 10.0691 2.3022 18 1 10.2057 9.1613 2.8458 19 6 10.5721 11.2582 2.6862 20 7 10.3081 12.3636 2.0245 21 14 11.7377 11.2987 4.1454 22 1 13.1259 11.0565 3.6769 23 1 11.6619 12.6283 4.8025 24 1 11.3518 10.2437 5.1166 25 6 7.4027 8.2011 1.5531 26 6 6.9455 6.9118 1.3643 27 8 1.6620 2.0813 -1.2211 28 6 1.2271 3.4330 -1.0596 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8559 0.9007 1.0246 35 1 4.0021 0.9618 -0.7483 36 1 3.4118 3.5580 0.2567 37 1 7.8177 4.0136 0.2216 38 1 9.3499 5.8004 -0.7414 39 1 10.1501 8.1032 -0.4049 40 1 9.5750 10.3721 0.2308 41 1 8.2025 10.6948 1.3173 42 1 10.7184 13.2002 2.2943 43 1 6.8606 8.8766 2.1982 44 1 6.0466 6.5787 1.8620 45 1 2.0513 4.0369 -0.6801 46 1 0.3975 3.4657 -0.3534 47 1 0.9008 3.8271 -2.0220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338048095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:44 Heat of formation + Delta-G solvation = -120.320921 kcal Electronic energy + Delta-G solvation = -27523.880188 eV Core-core repulsion = 23477.634858 eV Total energy + Delta-G solvation = -4046.245330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.18381 -40.69564 -39.65872 -39.16652 -36.70920 -35.74330 -34.97281 -34.40878 -32.31702 -31.84545 -30.24636 -28.78110 -27.57343 -26.29152 -24.94614 -24.00404 -23.61736 -22.45463 -21.96833 -21.24049 -19.95385 -18.60411 -18.48373 -18.05184 -17.72599 -17.16291 -16.93619 -16.80131 -16.22461 -16.01785 -15.96178 -15.69150 -15.16992 -15.04816 -14.71339 -14.60964 -14.53010 -14.34078 -14.25600 -13.99778 -13.71208 -13.30987 -13.21575 -13.10264 -12.95848 -12.61585 -12.48910 -12.44709 -12.31400 -12.05534 -12.00237 -11.68880 -11.64658 -11.52126 -11.17379 -10.88537 -10.63393 -10.59315 -10.36817 -9.81883 -8.99524 -8.18303 -6.32290 -0.06687 0.52337 0.62825 1.12531 1.41150 1.41818 1.53276 1.97678 2.40634 2.43129 2.74190 2.94237 3.11912 3.21634 3.58613 3.92173 3.99882 4.04693 4.07974 4.34577 4.37733 4.39740 4.46975 4.50308 4.51921 4.54515 4.56374 4.62548 4.78505 4.80283 4.92251 5.06021 5.07678 5.13746 5.21860 5.23574 5.26713 5.37300 5.37915 5.44277 5.53282 5.74910 5.77555 6.04847 6.06240 6.16302 6.18704 6.21864 6.57507 6.76726 6.80472 7.36308 8.90128 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.001798 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.280483 B =15565.614144 C =15819.855862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.077 3.923 4 H 0.085 0.915 5 C 0.095 3.905 6 N -0.689 5.689 7 C 0.517 3.483 8 O -0.533 6.533 9 C 0.503 3.497 10 O -0.523 6.523 11 N -0.627 5.627 12 C 0.109 3.891 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.068 4.068 16 C 0.056 3.944 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.965 3.035 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.117 4.117 26 C -0.116 4.116 27 O -0.395 6.395 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.414 0.586 37 H 0.431 0.569 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.008 0.992 41 H 0.003 0.997 42 H 0.265 0.735 43 H 0.117 0.883 44 H 0.130 0.870 45 H 0.036 0.964 46 H 0.061 0.939 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.456 -26.359 -4.367 32.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C 0.019 3.981 4 H 0.103 0.897 5 C -0.027 4.027 6 N -0.344 5.344 7 C 0.297 3.703 8 O -0.410 6.410 9 C 0.285 3.715 10 O -0.399 6.399 11 N -0.274 5.274 12 C 0.016 3.984 13 C -0.141 4.141 14 C -0.131 4.131 15 C -0.069 4.069 16 C 0.019 3.981 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.193 4.193 20 N -0.570 5.570 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.191 1.191 25 C -0.136 4.136 26 C -0.136 4.136 27 O -0.314 6.314 28 C -0.075 4.075 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.253 0.747 37 H 0.270 0.730 38 H 0.175 0.825 39 H 0.147 0.853 40 H 0.026 0.974 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.135 0.865 44 H 0.148 0.852 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.466 -26.349 -4.544 32.495 hybrid contribution 0.675 0.998 0.776 1.433 sum -17.791 -25.352 -3.768 31.200 Atomic orbital electron populations 1.21703 0.94643 1.02388 1.01939 1.21634 0.97114 0.93113 1.03954 1.22591 0.91278 0.96370 0.87908 0.89682 1.22303 0.95395 0.81147 1.03895 1.45906 1.05861 1.11203 1.71381 1.19717 0.84102 0.88194 0.78290 1.90778 1.55270 1.45922 1.49050 1.20422 0.83254 0.89957 0.77818 1.90793 1.55111 1.46397 1.47574 1.42957 1.07115 1.08672 1.68649 1.17571 0.96720 0.84915 0.99216 1.21057 0.96633 0.96140 1.00299 1.20991 0.99965 0.93175 0.98919 1.20482 0.94016 0.97455 0.94904 1.18114 0.95089 0.88763 0.96158 1.21389 1.26774 0.94439 1.14035 0.92574 1.25912 0.98451 0.95121 0.99837 1.70078 1.45068 0.99759 1.42047 0.85447 0.79032 0.77570 0.79009 1.19595 1.20627 1.19106 1.20940 0.96543 0.95930 1.00145 1.20999 1.00661 0.93556 0.98374 1.87957 1.85566 1.26789 1.31067 1.23059 0.98551 0.82084 1.03794 0.91672 0.92305 0.93080 0.91061 0.88627 0.88574 0.90455 0.74688 0.72954 0.82494 0.85329 0.97381 0.97882 0.92600 0.86482 0.85191 0.94513 0.92019 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.81 71.98 0.71 -0.37 16 2 C -0.12 -0.88 5.64 30.59 0.17 -0.71 16 3 C 0.08 0.75 2.34 30.60 0.07 0.82 16 4 H 0.09 0.62 7.64 -2.39 -0.02 0.60 16 5 C 0.10 1.20 5.35 86.38 0.46 1.66 16 6 N -0.69 -11.41 5.44 -464.50 -2.53 -13.93 16 7 C 0.52 11.20 7.89 87.24 0.69 11.88 16 8 O -0.53 -13.15 16.48 -3.28 -0.05 -13.20 16 9 C 0.50 12.64 7.62 87.24 0.66 13.30 16 10 O -0.52 -15.36 14.23 -3.32 -0.05 -15.40 16 11 N -0.63 -15.42 5.32 -304.84 -1.62 -17.04 16 12 C 0.11 3.34 6.26 38.22 0.24 3.57 16 13 C -0.12 -3.65 9.97 22.40 0.22 -3.43 16 14 C -0.11 -4.18 9.69 22.25 0.22 -3.96 16 15 C -0.07 -3.00 5.07 -19.84 -0.10 -3.10 16 16 C 0.06 2.98 5.10 29.10 0.15 3.12 16 17 C -0.53 -30.03 9.09 25.60 0.23 -29.80 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.00 0.28 5.46 84.65 0.46 0.75 16 20 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 21 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C -0.12 -4.72 9.69 22.25 0.22 -4.50 16 26 C -0.12 -4.05 8.65 22.40 0.19 -3.85 16 27 O -0.39 -5.42 9.82 -148.98 -1.46 -6.88 16 28 C 0.02 0.23 10.61 113.37 1.20 1.43 16 29 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.05 0.49 7.82 -2.38 -0.02 0.47 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.41 6.31 5.38 -92.71 -0.50 5.81 16 37 H 0.43 8.53 8.30 -92.71 -0.77 7.76 16 38 H 0.16 3.48 8.06 -2.91 -0.02 3.45 16 39 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.01 0.44 8.08 -2.39 -0.02 0.43 16 41 H 0.00 0.16 8.08 -2.39 -0.02 0.14 16 42 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.13 4.31 6.49 -2.91 -0.02 4.29 16 45 H 0.04 0.43 5.78 -2.39 -0.01 0.41 16 46 H 0.06 0.46 8.04 -2.39 -0.02 0.44 16 47 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.24 396.50 2.12 -68.12 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.27 Total: 20.95 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.80 Total: -13.17 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -3.86 Total: -86.56 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.56 Total: -35.49 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.24 2.12 -68.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338048095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.204 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds