Wall clock time and date at job start Tue Mar 31 2020 18:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 H 1.09000 * 109.47125 * 304.20661 * 3 2 1 5 5 C 1.52993 * 109.47236 * 184.20173 * 3 2 1 6 6 N 1.46503 * 109.47183 * 180.02562 * 5 3 2 7 7 C 1.34776 * 119.99556 * 180.02562 * 6 5 3 8 8 O 1.21362 * 120.00656 * 359.72150 * 7 6 5 9 9 C 1.49361 * 119.99638 * 179.72416 * 7 6 5 10 10 O 1.21375 * 119.99676 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00040 * 179.97438 * 9 7 6 12 12 C 1.39716 * 119.99986 * 175.87219 * 11 9 7 13 13 C 1.38928 * 120.07648 * 214.90543 * 12 11 9 14 14 C 1.38099 * 119.92420 * 179.77270 * 13 12 11 15 15 C 1.38299 * 120.07442 * 0.48107 * 14 13 12 16 16 C 1.50698 * 119.92546 * 179.76925 * 15 14 13 17 17 C 1.50706 * 109.47005 * 270.02356 * 16 15 14 18 18 H 1.08003 * 120.00088 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99863 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00097 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47388 * 89.99761 * 21 19 17 23 23 H 1.48503 * 109.47293 * 209.99623 * 21 19 17 24 24 H 1.48506 * 109.47250 * 329.99585 * 21 19 17 25 25 C 1.38295 * 120.15332 * 359.79374 * 15 14 13 26 26 C 1.38098 * 120.07356 * 359.95305 * 25 15 14 27 27 O 1.42904 * 109.47280 * 64.20148 * 3 2 1 28 28 C 1.42896 * 114.00121 * 254.50386 * 27 3 2 29 29 H 1.08997 * 109.47098 * 179.78346 * 1 2 3 30 30 H 1.08998 * 109.47346 * 299.78449 * 1 2 3 31 31 H 1.09001 * 109.47061 * 59.78418 * 1 2 3 32 32 H 1.08996 * 109.46943 * 239.99754 * 2 1 3 33 33 H 1.09000 * 109.46941 * 119.99498 * 2 1 3 34 34 H 1.09004 * 109.47326 * 60.00037 * 5 3 2 35 35 H 1.09000 * 109.47463 * 300.00282 * 5 3 2 36 36 H 0.96998 * 119.99702 * 359.72417 * 6 5 3 37 37 H 0.97001 * 119.99873 * 355.87961 * 11 9 7 38 38 H 1.07996 * 120.03699 * 359.97438 * 13 12 11 39 39 H 1.07994 * 119.96542 * 180.25399 * 14 13 12 40 40 H 1.09001 * 109.47289 * 30.02300 * 16 15 14 41 41 H 1.08993 * 109.47524 * 150.02414 * 16 15 14 42 42 H 0.97002 * 120.00115 * 180.02562 * 20 19 17 43 43 H 1.07995 * 119.96369 * 179.97438 * 25 15 14 44 44 H 1.08003 * 120.03728 * 180.02562 * 26 25 15 45 45 H 1.09003 * 109.47242 * 304.85186 * 28 27 3 46 46 H 1.09002 * 109.47543 * 64.84652 * 28 27 3 47 47 H 1.08999 * 109.47131 * 184.84800 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9777 -0.8499 5 6 3.5663 1.4439 -0.1057 6 7 4.0547 2.8251 -0.1051 7 6 5.3768 3.0723 -0.1910 8 8 6.1631 2.1507 -0.2638 9 6 5.8743 4.4806 -0.1966 10 8 5.0878 5.4023 -0.1242 11 7 7.1964 4.7279 -0.2820 12 6 7.6564 6.0440 -0.3742 13 6 8.7772 6.3377 -1.1407 14 6 9.2264 7.6403 -1.2335 15 6 8.5677 8.6504 -0.5563 16 6 9.0638 10.0699 -0.6557 17 6 10.0647 10.3301 0.4406 18 1 10.3167 9.5458 1.1391 19 6 10.6595 11.5690 0.5511 20 7 11.5333 11.7959 1.5075 21 14 10.2243 12.9252 -0.6574 22 1 9.0750 13.7057 -0.1329 23 1 11.3931 13.8240 -0.8349 24 1 9.8590 12.3243 -1.9654 25 6 7.4550 8.3607 0.2122 26 6 6.9974 7.0611 0.3051 27 8 1.6460 2.0871 1.2130 28 6 0.5753 3.0200 1.0542 29 1 -0.3633 -1.0276 -0.0039 30 1 -0.3634 0.5105 0.8919 31 1 -0.3633 0.5172 -0.8881 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8669 0.9522 -1.0310 35 1 3.9899 0.9087 0.7442 36 1 3.4262 3.5616 -0.0472 37 1 7.8286 3.9922 -0.2796 38 1 9.2947 5.5487 -1.6661 39 1 10.0952 7.8700 -1.8324 40 1 9.5389 10.2218 -1.6249 41 1 8.2239 10.7565 -0.5512 42 1 11.9516 12.6677 1.5855 43 1 6.9433 9.1518 0.7400 44 1 6.1282 6.8356 0.9051 45 1 0.8421 3.7534 0.2933 46 1 -0.3262 2.4897 0.7473 47 1 0.3930 3.5285 2.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338048096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:48 Heat of formation + Delta-G solvation = -96.120145 kcal Electronic energy + Delta-G solvation = -27454.014944 eV Core-core repulsion = 23408.819038 eV Total energy + Delta-G solvation = -4045.195905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.09732 -39.69067 -38.88864 -38.03036 -35.63947 -34.81269 -33.73646 -32.96361 -30.91314 -30.43967 -29.83777 -27.58354 -26.85647 -25.22818 -23.61527 -22.46938 -22.37390 -21.89033 -20.61451 -20.06946 -18.93360 -17.55605 -17.41234 -16.78014 -16.70853 -16.14402 -16.09565 -15.90217 -15.10203 -14.96842 -14.78440 -14.46662 -14.16916 -14.06840 -13.98608 -13.65899 -13.29894 -13.19424 -12.97745 -12.76283 -12.49015 -12.42363 -12.31942 -11.91447 -11.86084 -11.70120 -11.67176 -11.48568 -11.26185 -10.88981 -10.53426 -10.24842 -10.18307 -10.06099 -9.83048 -9.63891 -9.54752 -9.34657 -8.59132 -8.40922 -7.53906 -6.08021 -4.07408 1.06286 1.88339 1.94473 2.16157 3.02573 3.16494 3.28508 3.36375 3.38951 3.40134 4.11263 4.18669 4.35615 4.38980 4.40954 4.41408 4.70758 4.81762 4.88653 4.97621 5.02952 5.14274 5.23160 5.24457 5.33723 5.34018 5.40716 5.44956 5.53919 5.71075 5.75690 5.80576 5.85523 5.93165 6.05355 6.48217 6.52716 6.62467 6.67463 6.80088 6.91269 6.99826 7.01227 7.22891 7.46763 7.55008 7.56587 7.69165 7.84333 8.48516 8.97232 9.52066 11.04836 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.001820 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.331966 B =15385.137044 C =15982.116500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.075 3.925 4 H 0.073 0.927 5 C 0.114 3.886 6 N -0.696 5.696 7 C 0.512 3.488 8 O -0.519 6.519 9 C 0.503 3.497 10 O -0.504 6.504 11 N -0.634 5.634 12 C 0.097 3.903 13 C -0.134 4.134 14 C -0.106 4.106 15 C -0.033 4.033 16 C 0.013 3.987 17 C -0.514 4.514 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.107 4.107 26 C -0.113 4.113 27 O -0.378 6.378 28 C 0.024 3.976 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.418 0.582 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.029 0.971 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.124 0.876 44 H 0.130 0.870 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.849 -23.444 -5.427 32.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C 0.016 3.984 4 H 0.091 0.909 5 C -0.009 4.009 6 N -0.349 5.349 7 C 0.293 3.707 8 O -0.395 6.395 9 C 0.284 3.716 10 O -0.378 6.378 11 N -0.280 5.280 12 C 0.005 3.995 13 C -0.154 4.154 14 C -0.124 4.124 15 C -0.033 4.033 16 C -0.024 4.024 17 C -0.552 4.552 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.538 5.538 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.126 4.126 26 C -0.133 4.133 27 O -0.296 6.296 28 C -0.072 4.072 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.256 0.744 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.148 0.852 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.667 -23.401 -5.180 32.310 hybrid contribution -0.225 0.804 -0.658 1.063 sum -21.892 -22.597 -5.838 32.000 Atomic orbital electron populations 1.21799 0.95130 1.02227 1.01983 1.21879 0.96874 0.95356 1.03440 1.22481 0.93131 0.94594 0.88145 0.90942 1.21765 0.92903 0.82639 1.03624 1.45581 1.06909 1.09793 1.72625 1.20046 0.83328 0.89414 0.77958 1.90777 1.55148 1.45636 1.47933 1.20075 0.83417 0.89389 0.78731 1.90779 1.55154 1.45220 1.46689 1.43000 1.06797 1.08268 1.69890 1.17542 0.97855 0.82863 1.01236 1.20793 0.97390 0.97362 0.99836 1.20878 0.99794 0.91346 1.00413 1.20372 0.92449 0.97621 0.92871 1.18825 0.96732 0.88487 0.98316 1.20935 1.22389 0.98886 1.12962 0.90766 1.24998 0.94597 0.98336 0.95299 1.69902 1.28325 1.23246 1.32300 0.86805 0.78157 0.82151 0.82392 1.20166 1.21261 1.18914 1.20993 0.96845 0.95670 0.99053 1.21115 1.00617 0.92336 0.99202 1.87977 1.53159 1.57672 1.30832 1.22982 0.89526 0.91800 1.02883 0.92222 0.92057 0.92832 0.90497 0.90483 0.89540 0.89847 0.75009 0.74444 0.86295 0.85656 0.95306 0.95726 0.92595 0.85774 0.85204 0.93705 0.93614 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.17 37.16 0.34 -0.29 16 2 C -0.14 -0.61 5.65 -26.73 -0.15 -0.76 16 3 C 0.07 0.42 2.35 -26.73 -0.06 0.35 16 4 H 0.07 0.33 7.59 -51.93 -0.39 -0.06 16 5 C 0.11 0.81 5.37 -4.04 -0.02 0.78 16 6 N -0.70 -6.31 5.44 -60.76 -0.33 -6.64 16 7 C 0.51 5.96 7.89 -11.63 -0.09 5.87 16 8 O -0.52 -6.86 16.48 5.49 0.09 -6.77 16 9 C 0.50 6.72 7.73 -11.63 -0.09 6.63 16 10 O -0.50 -7.68 13.93 5.47 0.08 -7.60 16 11 N -0.63 -8.49 5.32 -10.29 -0.05 -8.55 16 12 C 0.10 1.57 6.29 -83.75 -0.53 1.04 16 13 C -0.13 -2.13 9.97 -39.38 -0.39 -2.52 16 14 C -0.11 -1.95 9.69 -39.61 -0.38 -2.33 16 15 C -0.03 -0.68 5.07 -104.58 -0.53 -1.21 16 16 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 17 C -0.51 -14.46 9.65 -34.44 -0.33 -14.80 16 18 H 0.07 2.29 7.98 -52.48 -0.42 1.87 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 21 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 25 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 26 C -0.11 -2.00 8.69 -39.38 -0.34 -2.34 16 27 O -0.38 -2.74 9.74 -35.23 -0.34 -3.08 16 28 C 0.02 0.13 10.43 101.05 1.05 1.18 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.29 6.49 -51.93 -0.34 -0.05 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 3.50 7.82 -40.82 -0.32 3.18 16 37 H 0.42 4.74 8.30 -40.82 -0.34 4.40 16 38 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 41 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 44 H 0.13 2.23 6.25 -52.48 -0.33 1.90 16 45 H 0.04 0.21 8.04 -51.93 -0.42 -0.21 16 46 H 0.05 0.18 6.40 -51.93 -0.33 -0.15 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -33.24 393.36 -7.70 -40.94 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.04 Total: 4.62 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.13 Total: -8.76 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.39 Total: -41.84 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.18 Total: -17.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.24 -7.70 -40.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338048096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.180 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds