Wall clock time and date at job start Tue Mar 31 2020 18:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47147 * 2 1 4 4 H 1.09000 * 109.47125 * 304.20661 * 3 2 1 5 5 C 1.52993 * 109.47236 * 184.20173 * 3 2 1 6 6 N 1.46503 * 109.47183 * 180.02562 * 5 3 2 7 7 C 1.34776 * 119.99556 * 180.02562 * 6 5 3 8 8 O 1.21362 * 120.00656 * 359.72150 * 7 6 5 9 9 C 1.49361 * 119.99638 * 179.72416 * 7 6 5 10 10 O 1.21375 * 119.99676 * 359.97438 * 9 7 6 11 11 N 1.34778 * 120.00040 * 179.97438 * 9 7 6 12 12 C 1.39716 * 119.99986 * 175.87219 * 11 9 7 13 13 C 1.38928 * 120.07648 * 214.90543 * 12 11 9 14 14 C 1.38099 * 119.92420 * 179.77270 * 13 12 11 15 15 C 1.38299 * 120.07442 * 0.48107 * 14 13 12 16 16 C 1.50698 * 119.92546 * 179.76925 * 15 14 13 17 17 C 1.50706 * 109.47005 * 270.02356 * 16 15 14 18 18 H 1.08003 * 120.00088 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99863 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00097 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47388 * 89.99761 * 21 19 17 23 23 H 1.48503 * 109.47293 * 209.99623 * 21 19 17 24 24 H 1.48506 * 109.47250 * 329.99585 * 21 19 17 25 25 C 1.38295 * 120.15332 * 359.79374 * 15 14 13 26 26 C 1.38098 * 120.07356 * 359.95305 * 25 15 14 27 27 O 1.42904 * 109.47280 * 64.20148 * 3 2 1 28 28 C 1.42896 * 114.00121 * 254.50386 * 27 3 2 29 29 H 1.08997 * 109.47098 * 179.78346 * 1 2 3 30 30 H 1.08998 * 109.47346 * 299.78449 * 1 2 3 31 31 H 1.09001 * 109.47061 * 59.78418 * 1 2 3 32 32 H 1.08996 * 109.46943 * 239.99754 * 2 1 3 33 33 H 1.09000 * 109.46941 * 119.99498 * 2 1 3 34 34 H 1.09004 * 109.47326 * 60.00037 * 5 3 2 35 35 H 1.09000 * 109.47463 * 300.00282 * 5 3 2 36 36 H 0.96998 * 119.99702 * 359.72417 * 6 5 3 37 37 H 0.97001 * 119.99873 * 355.87961 * 11 9 7 38 38 H 1.07996 * 120.03699 * 359.97438 * 13 12 11 39 39 H 1.07994 * 119.96542 * 180.25399 * 14 13 12 40 40 H 1.09001 * 109.47289 * 30.02300 * 16 15 14 41 41 H 1.08993 * 109.47524 * 150.02414 * 16 15 14 42 42 H 0.97002 * 120.00115 * 180.02562 * 20 19 17 43 43 H 1.07995 * 119.96369 * 179.97438 * 25 15 14 44 44 H 1.08003 * 120.03728 * 180.02562 * 26 25 15 45 45 H 1.09003 * 109.47242 * 304.85186 * 28 27 3 46 46 H 1.09002 * 109.47543 * 64.84652 * 28 27 3 47 47 H 1.08999 * 109.47131 * 184.84800 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6165 1.9777 -0.8499 5 6 3.5663 1.4439 -0.1057 6 7 4.0547 2.8251 -0.1051 7 6 5.3768 3.0723 -0.1910 8 8 6.1631 2.1507 -0.2638 9 6 5.8743 4.4806 -0.1966 10 8 5.0878 5.4023 -0.1242 11 7 7.1964 4.7279 -0.2820 12 6 7.6564 6.0440 -0.3742 13 6 8.7772 6.3377 -1.1407 14 6 9.2264 7.6403 -1.2335 15 6 8.5677 8.6504 -0.5563 16 6 9.0638 10.0699 -0.6557 17 6 10.0647 10.3301 0.4406 18 1 10.3167 9.5458 1.1391 19 6 10.6595 11.5690 0.5511 20 7 11.5333 11.7959 1.5075 21 14 10.2243 12.9252 -0.6574 22 1 9.0750 13.7057 -0.1329 23 1 11.3931 13.8240 -0.8349 24 1 9.8590 12.3243 -1.9654 25 6 7.4550 8.3607 0.2122 26 6 6.9974 7.0611 0.3051 27 8 1.6460 2.0871 1.2130 28 6 0.5753 3.0200 1.0542 29 1 -0.3633 -1.0276 -0.0039 30 1 -0.3634 0.5105 0.8919 31 1 -0.3633 0.5172 -0.8881 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8669 0.9522 -1.0310 35 1 3.9899 0.9087 0.7442 36 1 3.4262 3.5616 -0.0472 37 1 7.8286 3.9922 -0.2796 38 1 9.2947 5.5487 -1.6661 39 1 10.0952 7.8700 -1.8324 40 1 9.5389 10.2218 -1.6249 41 1 8.2239 10.7565 -0.5512 42 1 11.9516 12.6677 1.5855 43 1 6.9433 9.1518 0.7400 44 1 6.1282 6.8356 0.9051 45 1 0.8421 3.7534 0.2933 46 1 -0.3262 2.4897 0.7473 47 1 0.3930 3.5285 2.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338048096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:47 Heat of formation + Delta-G solvation = -119.224239 kcal Electronic energy + Delta-G solvation = -27455.016812 eV Core-core repulsion = 23408.819038 eV Total energy + Delta-G solvation = -4046.197774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15503 -40.65263 -39.65876 -39.17509 -36.72976 -35.79367 -34.91569 -34.18201 -32.64036 -31.83911 -30.42223 -29.10543 -27.46072 -26.21521 -24.71607 -23.91809 -23.54961 -22.37657 -21.90450 -21.25035 -19.93078 -18.95250 -18.55422 -18.02899 -17.69380 -17.14671 -16.88637 -16.70222 -16.38258 -15.99707 -15.94600 -15.74297 -15.15433 -15.10868 -14.84796 -14.59214 -14.40892 -14.32517 -14.11173 -13.94795 -13.83294 -13.51636 -13.27458 -13.14262 -12.94779 -12.66761 -12.48768 -12.27884 -12.24682 -12.05799 -11.85530 -11.79192 -11.63054 -11.59321 -11.17109 -10.81640 -10.77139 -10.50651 -10.38457 -9.81063 -8.97099 -8.28278 -6.33451 -0.03496 0.52891 0.61093 1.16154 1.38602 1.39817 1.51855 2.00239 2.36876 2.46677 2.74736 2.91081 3.06206 3.26518 3.65070 3.94033 4.00595 4.03418 4.09663 4.28632 4.37006 4.44939 4.50855 4.51339 4.52433 4.56336 4.57965 4.61193 4.76451 4.84793 4.90328 5.03012 5.06979 5.07250 5.11801 5.21406 5.22593 5.28629 5.32756 5.40546 5.51466 5.58233 5.80905 5.97618 6.08984 6.21053 6.21369 6.28890 6.60623 6.72982 6.79548 7.30050 8.88120 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.001820 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.331966 B =15385.137044 C =15982.116500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.135 4.135 3 C 0.077 3.923 4 H 0.086 0.914 5 C 0.111 3.889 6 N -0.683 5.683 7 C 0.518 3.482 8 O -0.536 6.536 9 C 0.504 3.496 10 O -0.523 6.523 11 N -0.628 5.628 12 C 0.108 3.892 13 C -0.124 4.124 14 C -0.112 4.112 15 C -0.067 4.067 16 C 0.020 3.980 17 C -0.520 4.520 18 H 0.029 0.971 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.950 3.050 22 H -0.267 1.267 23 H -0.283 1.283 24 H -0.243 1.243 25 C -0.118 4.118 26 C -0.120 4.120 27 O -0.400 6.400 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.417 0.583 37 H 0.430 0.570 38 H 0.157 0.843 39 H 0.133 0.867 40 H 0.036 0.964 41 H 0.029 0.971 42 H 0.267 0.733 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.402 -24.787 -7.494 34.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.019 3.981 4 H 0.104 0.896 5 C -0.011 4.011 6 N -0.335 5.335 7 C 0.298 3.702 8 O -0.413 6.413 9 C 0.286 3.714 10 O -0.398 6.398 11 N -0.275 5.275 12 C 0.015 3.985 13 C -0.143 4.143 14 C -0.130 4.130 15 C -0.068 4.068 16 C -0.017 4.017 17 C -0.558 4.558 18 H 0.047 0.953 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.773 3.227 22 H -0.192 1.192 23 H -0.209 1.209 24 H -0.167 1.167 25 C -0.137 4.137 26 C -0.140 4.140 27 O -0.319 6.319 28 C -0.076 4.076 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.270 0.730 38 H 0.175 0.825 39 H 0.151 0.849 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.257 -24.786 -7.251 34.753 hybrid contribution 0.193 1.055 0.067 1.075 sum -23.064 -23.731 -7.184 33.863 Atomic orbital electron populations 1.21789 0.94764 1.02548 1.01936 1.21876 0.97143 0.94564 1.03762 1.22537 0.91984 0.95401 0.88140 0.89582 1.21962 0.93975 0.81246 1.03926 1.45629 1.06018 1.10964 1.70917 1.19669 0.84033 0.88158 0.78367 1.90779 1.55666 1.45581 1.49291 1.20437 0.83099 0.90097 0.77759 1.90774 1.55620 1.46062 1.47358 1.42948 1.07301 1.07498 1.69730 1.17632 0.97315 0.83715 0.99863 1.21080 0.96942 0.97239 0.99068 1.21039 0.99817 0.91965 1.00196 1.20261 0.94129 0.96864 0.95536 1.18668 0.95575 0.90789 0.96674 1.21175 1.23363 0.97852 1.13395 0.95301 1.25977 0.94342 1.01245 0.97352 1.70061 1.30018 1.24205 1.34674 0.85656 0.78080 0.78479 0.80453 1.19241 1.20880 1.16676 1.21015 0.96876 0.96569 0.99190 1.21162 1.00989 0.92132 0.99696 1.87948 1.53860 1.58197 1.31885 1.23089 0.89559 0.91803 1.03162 0.91763 0.92853 0.92101 0.89079 0.91287 0.88219 0.90687 0.74563 0.72998 0.82524 0.84870 0.94585 0.95298 0.92399 0.86111 0.84907 0.93166 0.92433 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.17 71.98 0.66 -0.31 16 2 C -0.14 -0.96 5.65 30.60 0.17 -0.78 16 3 C 0.08 0.72 2.35 30.59 0.07 0.79 16 4 H 0.09 0.57 7.59 -2.39 -0.02 0.55 16 5 C 0.11 1.37 5.37 86.38 0.46 1.84 16 6 N -0.68 -11.20 5.44 -464.50 -2.53 -13.72 16 7 C 0.52 11.15 7.89 87.24 0.69 11.84 16 8 O -0.54 -13.17 16.48 -3.28 -0.05 -13.22 16 9 C 0.50 12.63 7.73 87.24 0.67 13.31 16 10 O -0.52 -15.24 13.93 -3.33 -0.05 -15.29 16 11 N -0.63 -15.55 5.32 -304.83 -1.62 -17.17 16 12 C 0.11 3.30 6.29 38.22 0.24 3.54 16 13 C -0.12 -3.65 9.97 22.40 0.22 -3.43 16 14 C -0.11 -4.00 9.69 22.25 0.22 -3.79 16 15 C -0.07 -2.82 5.07 -19.84 -0.10 -2.92 16 16 C 0.02 0.95 4.17 29.10 0.12 1.07 16 17 C -0.52 -30.13 9.65 25.60 0.25 -29.89 16 18 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 19 C 0.01 0.46 5.47 84.65 0.46 0.92 16 20 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 21 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 25 C -0.12 -4.62 9.69 22.25 0.22 -4.40 16 26 C -0.12 -4.18 8.69 22.40 0.19 -3.99 16 27 O -0.40 -5.29 9.74 -148.98 -1.45 -6.74 16 28 C 0.02 0.18 10.43 113.37 1.18 1.36 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.43 6.49 -2.39 -0.02 0.41 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.42 6.37 7.82 -92.71 -0.72 5.65 16 37 H 0.43 8.69 8.30 -92.71 -0.77 7.92 16 38 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.04 1.64 7.14 -2.39 -0.02 1.62 16 41 H 0.03 1.32 7.51 -2.39 -0.02 1.31 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.13 4.51 6.25 -2.91 -0.02 4.50 16 45 H 0.05 0.39 8.04 -2.39 -0.02 0.37 16 46 H 0.06 0.37 6.40 -2.39 -0.02 0.36 16 47 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -72.98 393.36 1.67 -71.32 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -0.55 Total: 23.31 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.73 Total: -14.85 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -3.85 Total: -90.19 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.55 Total: -35.25 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -72.98 1.67 -71.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338048096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.908 kcal (2) G-P(sol) polarization free energy of solvation -72.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds