Wall clock time and date at job start Tue Mar 31 2020 18:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47145 * 2 1 4 4 H 1.09005 * 109.47088 * 54.99943 * 3 2 1 5 5 C 1.52998 * 109.47257 * 174.99766 * 3 2 1 6 6 O 1.42901 * 109.46577 * 54.99937 * 5 3 2 7 7 C 1.42907 * 113.99804 * 179.97438 * 6 5 3 8 8 N 1.46493 * 109.47321 * 295.00265 * 3 2 1 9 9 C 1.34774 * 120.00570 * 84.99732 * 8 3 2 10 10 O 1.21361 * 119.99935 * 0.02562 * 9 8 3 11 11 C 1.49350 * 120.00612 * 180.27814 * 9 8 3 12 12 O 1.21381 * 119.99854 * 359.72396 * 11 9 8 13 13 N 1.34773 * 120.00295 * 179.72511 * 11 9 8 14 14 C 1.39730 * 120.00002 * 175.37993 * 13 11 9 15 15 C 1.38931 * 120.07480 * 214.81929 * 14 13 11 16 16 C 1.38101 * 119.92319 * 179.69552 * 15 14 13 17 17 C 1.38299 * 120.06962 * 0.58176 * 16 15 14 18 18 C 1.50700 * 119.91865 * 179.69740 * 17 16 15 19 19 C 1.50700 * 109.47448 * 270.02023 * 18 17 16 20 20 H 1.08011 * 119.99354 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00249 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00454 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00044 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47122 * 119.99958 * 23 21 19 26 26 H 1.48493 * 109.47413 * 239.99947 * 23 21 19 27 27 C 1.38289 * 120.15943 * 359.71736 * 17 16 15 28 28 C 1.38099 * 120.07063 * 359.97438 * 27 17 16 29 29 H 1.09002 * 109.46814 * 60.00039 * 1 2 3 30 30 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47120 * 299.99799 * 1 2 3 32 32 H 1.09001 * 109.46811 * 239.99869 * 2 1 3 33 33 H 1.09002 * 109.46814 * 119.99961 * 2 1 3 34 34 H 1.08998 * 109.47135 * 175.00149 * 5 3 2 35 35 H 1.08999 * 109.47478 * 295.00274 * 5 3 2 36 36 H 1.08993 * 109.47038 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47389 * 300.00522 * 7 6 5 38 38 H 1.08998 * 109.46739 * 59.99973 * 7 6 5 39 39 H 0.97006 * 119.99796 * 264.99993 * 8 3 2 40 40 H 0.96996 * 120.00056 * 355.38014 * 13 11 9 41 41 H 1.07996 * 120.03982 * 359.97438 * 15 14 13 42 42 H 1.07993 * 119.96190 * 180.27528 * 16 15 14 43 43 H 1.09008 * 109.47386 * 30.02095 * 18 17 16 44 44 H 1.08997 * 109.47137 * 150.02080 * 18 17 16 45 45 H 0.96991 * 120.00393 * 180.02562 * 22 21 19 46 46 H 1.07996 * 119.96501 * 180.02562 * 27 17 16 47 47 H 1.08001 * 120.03454 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 8 4.1293 0.6403 -0.9121 7 6 5.5566 0.5751 -0.8856 8 7 1.6525 2.0975 -1.2517 9 6 0.4352 2.6644 -1.3669 10 8 -0.3397 2.6327 -0.4335 11 6 0.0378 3.3267 -2.6451 12 8 0.8129 3.3589 -3.5786 13 7 -1.1816 3.8888 -2.7622 14 6 -1.5184 4.5919 -3.9217 15 6 -2.3403 5.7094 -3.8443 16 6 -2.6661 6.4057 -4.9916 17 6 -2.1849 5.9847 -6.2179 18 6 -2.5481 6.7431 -7.4685 19 6 -3.8151 6.1727 -8.0519 20 1 -4.3083 5.3440 -7.5654 21 6 -4.3447 6.7085 -9.2065 22 7 -3.7440 7.7172 -9.7992 23 14 -5.9156 6.0018 -9.9292 24 1 -6.3910 4.8808 -9.0792 25 1 -6.9567 7.0597 -9.9803 26 1 -5.6485 5.5037 -11.3024 27 6 -1.3716 4.8692 -6.2994 28 6 -1.0367 4.1720 -5.1553 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9355 2.4655 0.0367 35 1 3.8500 1.0377 1.0961 36 1 5.9069 -0.0531 -1.7045 37 1 5.9684 1.5783 -0.9959 38 1 5.8833 0.1507 0.0638 39 1 2.2720 2.1232 -1.9977 40 1 -1.8253 3.8052 -2.0415 41 1 -2.7203 6.0358 -2.8876 42 1 -3.3013 7.2770 -4.9316 43 1 -2.7018 7.7943 -7.2243 44 1 -1.7409 6.6532 -8.1953 45 1 -4.1168 8.0944 -10.6113 46 1 -0.9973 4.5435 -7.2586 47 1 -0.4012 3.3011 -5.2196 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348074362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:03 Heat of formation + Delta-G solvation = -117.667511 kcal Electronic energy + Delta-G solvation = -27882.970059 eV Core-core repulsion = 23836.839790 eV Total energy + Delta-G solvation = -4046.130269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18846 -40.75841 -39.49293 -38.89364 -36.89277 -36.24192 -34.98779 -33.37191 -32.30108 -31.82146 -30.39645 -28.80041 -27.24080 -26.27759 -24.79532 -24.31605 -23.86268 -22.28494 -21.61758 -21.33694 -19.84930 -18.54211 -18.48621 -17.93360 -17.50852 -17.16691 -16.86597 -16.77663 -16.32871 -15.99052 -15.96165 -15.90581 -15.42158 -15.14625 -14.63499 -14.52784 -14.34904 -14.17954 -13.91319 -13.70244 -13.63136 -13.30302 -13.20912 -13.17267 -12.84343 -12.63262 -12.49688 -12.40772 -12.25898 -12.04371 -11.96633 -11.75722 -11.63798 -11.51272 -11.10547 -10.70762 -10.60797 -10.59263 -10.23364 -9.80110 -8.99007 -8.18549 -6.32384 0.01120 0.53798 0.64307 1.21467 1.40189 1.40925 1.54308 2.05129 2.40447 2.50543 2.82801 2.95261 3.11499 3.31933 3.68127 3.93358 4.02355 4.11162 4.20156 4.36083 4.40979 4.42543 4.53064 4.54440 4.59344 4.60644 4.61255 4.64049 4.69535 4.91340 4.95176 5.01862 5.09917 5.17491 5.24765 5.28603 5.32003 5.38349 5.39274 5.46768 5.55041 5.75691 5.87122 6.06093 6.08742 6.18752 6.22249 6.28142 6.67143 6.80580 6.85888 7.36118 8.90126 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022639 B = 0.001963 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.529485 B =14263.357106 C =14644.666258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.144 3.856 4 H 0.110 0.890 5 C 0.053 3.947 6 O -0.409 6.409 7 C 0.027 3.973 8 N -0.681 5.681 9 C 0.520 3.480 10 O -0.524 6.524 11 C 0.500 3.500 12 O -0.526 6.526 13 N -0.627 5.627 14 C 0.107 3.893 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.068 4.068 18 C 0.056 3.944 19 C -0.526 4.526 20 H 0.056 0.944 21 C 0.003 3.997 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.278 1.278 27 C -0.119 4.119 28 C -0.118 4.118 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.418 0.582 40 H 0.431 0.569 41 H 0.158 0.842 42 H 0.129 0.871 43 H 0.008 0.992 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.115 0.885 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.454 -15.102 25.671 33.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.041 3.959 4 H 0.127 0.873 5 C -0.024 4.024 6 O -0.328 6.328 7 C -0.069 4.069 8 N -0.335 5.335 9 C 0.300 3.700 10 O -0.401 6.401 11 C 0.283 3.717 12 O -0.401 6.401 13 N -0.274 5.274 14 C 0.014 3.986 15 C -0.140 4.140 16 C -0.132 4.132 17 C -0.069 4.069 18 C 0.019 3.981 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.195 4.195 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.201 1.201 26 H -0.203 1.203 27 C -0.138 4.138 28 C -0.137 4.137 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.255 0.745 40 H 0.270 0.730 41 H 0.176 0.824 42 H 0.147 0.853 43 H 0.027 0.973 44 H 0.020 0.980 45 H 0.074 0.926 46 H 0.133 0.867 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.383 -15.121 25.477 33.382 hybrid contribution -0.549 0.169 -0.963 1.122 sum 14.833 -14.952 24.513 32.319 Atomic orbital electron populations 1.21814 0.95982 1.01001 1.01580 1.21841 0.95599 0.95216 1.03695 1.21488 0.93833 0.94283 0.86279 0.87266 1.22909 0.91157 0.95834 0.92494 1.87874 1.21740 1.70813 1.52373 1.22893 0.79482 1.01691 1.02845 1.45822 1.15133 1.54217 1.18282 1.19554 0.83558 0.79822 0.87099 1.90780 1.51142 1.58529 1.39622 1.20594 0.82265 0.79913 0.88970 1.90787 1.51853 1.57059 1.40440 1.42929 1.15035 1.50895 1.18541 1.17596 1.01120 0.94322 0.85534 1.21062 0.99946 0.93406 0.99609 1.20992 1.00152 1.00692 0.91326 1.20479 0.94582 0.95679 0.96127 1.18117 0.95593 0.94278 0.90140 1.21410 1.08963 1.16790 1.09216 0.92617 1.25929 1.01021 0.95309 0.97251 1.70082 1.41467 1.25526 1.19945 0.85386 0.78891 0.78530 0.78181 1.18915 1.20094 1.20349 1.20957 0.98885 0.95717 0.98246 1.21150 1.01109 1.00616 0.90871 0.94794 0.92689 0.92398 0.91605 0.88892 0.91718 0.89022 0.89165 0.93457 0.92596 0.74486 0.72955 0.82432 0.85296 0.97332 0.97960 0.92590 0.86671 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 8.52 71.98 0.61 -1.77 16 2 C -0.13 -1.59 5.33 30.60 0.16 -1.43 16 3 C 0.14 1.77 2.66 44.99 0.12 1.89 16 4 H 0.11 1.30 7.58 -2.38 -0.02 1.29 16 5 C 0.05 0.45 5.68 71.98 0.41 0.86 16 6 O -0.41 -4.94 9.65 -148.98 -1.44 -6.38 16 7 C 0.03 0.20 11.01 113.37 1.25 1.45 16 8 N -0.68 -11.43 5.00 -443.99 -2.22 -13.65 16 9 C 0.52 10.92 6.45 87.24 0.56 11.49 16 10 O -0.52 -11.76 13.62 -3.28 -0.04 -11.80 16 11 C 0.50 12.77 7.73 87.24 0.67 13.45 16 12 O -0.53 -16.12 13.91 -3.34 -0.05 -16.16 16 13 N -0.63 -15.59 5.32 -304.84 -1.62 -17.21 16 14 C 0.11 3.36 6.30 38.21 0.24 3.60 16 15 C -0.12 -3.66 9.97 22.40 0.22 -3.44 16 16 C -0.11 -4.27 9.69 22.25 0.22 -4.05 16 17 C -0.07 -3.05 5.07 -19.84 -0.10 -3.15 16 18 C 0.06 3.00 5.10 29.10 0.15 3.15 16 19 C -0.53 -30.17 9.09 25.60 0.23 -29.93 16 20 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 21 C 0.00 0.17 5.46 84.65 0.46 0.63 16 22 N -0.93 -56.32 13.29 21.44 0.28 -56.03 16 23 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 27 C -0.12 -4.94 9.69 22.25 0.22 -4.72 16 28 C -0.12 -4.24 8.70 22.40 0.19 -4.05 16 29 H 0.03 0.69 5.65 -2.39 -0.01 0.67 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.97 7.85 -2.39 -0.02 0.95 16 32 H 0.07 0.99 7.73 -2.39 -0.02 0.97 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.42 7.19 7.85 -92.70 -0.73 6.46 16 40 H 0.43 8.52 8.30 -92.71 -0.77 7.75 16 41 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 42 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.01 0.48 8.08 -2.38 -0.02 0.46 16 44 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 45 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 47 H 0.13 4.66 6.22 -2.91 -0.02 4.65 16 Total: -1.00 -70.11 392.64 2.06 -68.05 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.50 Total: 22.62 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.62 Total: -16.03 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -3.56 Total: -86.89 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.53 Total: -34.34 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.11 2.06 -68.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348074362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.619 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds