Wall clock time and date at job start Tue Mar 31 2020 18:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08999 * 109.47015 * 55.00149 * 3 2 1 5 5 C 1.53008 * 109.47269 * 174.99731 * 3 2 1 6 6 N 1.46497 * 109.47485 * 295.00015 * 3 2 1 7 7 C 1.46503 * 120.00023 * 300.00155 * 6 3 2 8 8 C 1.52995 * 109.47424 * 97.44690 * 7 6 3 9 9 C 1.34783 * 120.00136 * 119.99536 * 6 3 2 10 10 O 1.21360 * 119.99564 * 356.26102 * 9 6 3 11 11 C 1.49311 * 119.99871 * 176.25760 * 9 6 3 12 12 O 1.21394 * 120.00205 * 5.71073 * 11 9 6 13 13 N 1.34782 * 119.99965 * 185.71390 * 11 9 6 14 14 C 1.39738 * 120.00025 * 175.02381 * 13 11 9 15 15 C 1.39002 * 120.00940 * 332.60033 * 14 13 11 16 16 C 1.37965 * 119.99354 * 179.74009 * 15 14 13 17 17 C 1.38938 * 120.00525 * 0.51660 * 16 15 14 18 18 O 1.35762 * 119.99073 * 179.74260 * 17 16 15 19 19 C 1.34805 * 116.99747 * 185.94262 * 18 17 16 20 20 H 1.07991 * 120.00069 * 5.52268 * 19 18 17 21 21 C 1.38657 * 119.99681 * 185.51742 * 19 18 17 22 22 N 1.31560 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47025 * 59.99919 * 23 21 19 25 25 H 1.48497 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46904 * 300.00014 * 23 21 19 27 27 C 1.38932 * 120.01561 * 359.75542 * 17 16 15 28 28 C 1.37971 * 120.00737 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46904 * 300.00046 * 1 2 3 31 31 H 1.09004 * 109.46623 * 59.99669 * 1 2 3 32 32 H 1.09001 * 109.47375 * 240.00201 * 2 1 3 33 33 H 1.08996 * 109.47009 * 119.99856 * 2 1 3 34 34 H 1.08999 * 109.46760 * 60.00262 * 5 3 2 35 35 H 1.08993 * 109.47066 * 300.00010 * 5 3 2 36 36 H 1.09001 * 109.47054 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47248 * 217.45093 * 7 6 3 38 38 H 1.09001 * 109.46810 * 337.44385 * 7 6 3 39 39 H 1.08996 * 109.47643 * 180.02562 * 8 7 6 40 40 H 1.09009 * 109.47026 * 300.00154 * 8 7 6 41 41 H 1.08997 * 109.47206 * 59.99313 * 8 7 6 42 42 H 0.96995 * 119.99920 * 355.01788 * 13 11 9 43 43 H 1.08001 * 119.99658 * 359.97438 * 15 14 13 44 44 H 1.08000 * 119.99704 * 180.25287 * 16 15 14 45 45 H 0.96999 * 119.99384 * 180.02562 * 22 21 19 46 46 H 1.07998 * 119.99738 * 179.97438 * 27 17 16 47 47 H 1.07996 * 120.00364 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1258 6 7 1.6525 2.0975 -1.2518 7 6 2.1139 1.5590 -2.5337 8 6 1.0186 0.6810 -3.1420 9 6 0.8713 3.1956 -1.2241 10 8 0.4332 3.6020 -0.1678 11 6 0.5450 3.9118 -2.4929 12 8 0.8957 3.4487 -3.5588 13 7 -0.1388 5.0727 -2.4548 14 6 -0.3539 5.7958 -3.6310 15 6 0.5431 5.6879 -4.6873 16 6 0.3274 6.3978 -5.8505 17 6 -0.7805 7.2288 -5.9621 18 8 -0.9896 7.9312 -7.1048 19 6 -2.0112 8.8107 -7.1043 20 1 -2.5635 8.9962 -6.1950 21 6 -2.3529 9.4771 -8.2712 22 7 -1.6803 9.2507 -9.3790 23 14 -3.7681 10.6963 -8.2704 24 1 -3.4808 11.7875 -7.3050 25 1 -3.9287 11.2692 -9.6309 26 1 -5.0195 10.0017 -7.8743 27 6 -1.6742 7.3412 -4.9043 28 6 -1.4621 6.6272 -3.7429 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9995 0.9054 -0.7160 35 1 3.8532 0.9571 1.0571 36 1 3.9282 2.4721 0.1262 37 1 2.3398 2.3811 -3.2130 38 1 3.0119 0.9620 -2.3748 39 1 1.3621 0.2800 -4.0956 40 1 0.7928 -0.1411 -2.4627 41 1 0.1206 1.2781 -3.3008 42 1 -0.4816 5.4061 -1.6109 43 1 1.4067 5.0455 -4.5989 44 1 1.0222 6.3109 -6.6728 45 1 -1.9191 9.7172 -10.1952 46 1 -2.5351 7.9875 -4.9912 47 1 -2.1567 6.7149 -2.9206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350155127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:29 Heat of formation + Delta-G solvation = -58.051043 kcal Electronic energy + Delta-G solvation = -28842.094839 eV Core-core repulsion = 24798.549734 eV Total energy + Delta-G solvation = -4043.545105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.21339 -39.56328 -38.52970 -37.37635 -36.58564 -34.26036 -33.43650 -32.22602 -31.19438 -30.28204 -29.74628 -28.31187 -25.67635 -24.97577 -23.99497 -23.44178 -22.40625 -21.60273 -20.45301 -19.56896 -18.22060 -17.92765 -17.37764 -17.15051 -16.22082 -16.20685 -15.60285 -14.87483 -14.65016 -14.49499 -14.29640 -14.21260 -13.99495 -13.77601 -13.70467 -13.57966 -13.41901 -12.89369 -12.81785 -12.70855 -12.56668 -12.24939 -12.03234 -11.90543 -11.76077 -11.64007 -11.47794 -11.41200 -11.20820 -11.11254 -10.96050 -10.94895 -10.70884 -10.47058 -9.78511 -9.43483 -9.22310 -8.96225 -8.75163 -8.26602 -6.97059 -6.48325 -4.05917 1.25516 2.13554 2.17216 2.33680 3.11064 3.11875 3.15572 3.22840 3.41836 3.94271 4.24937 4.42587 4.53568 4.64438 4.73084 4.81962 5.03718 5.07050 5.11824 5.19612 5.24455 5.26458 5.37504 5.41521 5.50351 5.51468 5.63286 5.65044 5.69693 5.73330 5.78674 5.88115 5.97247 6.05724 6.11636 6.14297 6.25258 6.27083 6.72176 6.74433 6.82479 6.94660 7.06246 7.16301 7.32165 7.45618 7.67731 7.74337 7.95768 8.09228 8.96785 9.66301 10.69297 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029767 B = 0.002180 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.418383 B =12839.556752 C =13133.185807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.130 3.870 4 H 0.103 0.897 5 C -0.162 4.162 6 N -0.575 5.575 7 C 0.091 3.909 8 C -0.165 4.165 9 C 0.511 3.489 10 O -0.527 6.527 11 C 0.493 3.507 12 O -0.500 6.500 13 N -0.623 5.623 14 C 0.028 3.972 15 C -0.070 4.070 16 C -0.177 4.177 17 C 0.148 3.852 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.092 0.908 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.218 4.218 28 C -0.086 4.086 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.413 0.587 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.271 0.729 46 H 0.133 0.867 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 -16.252 17.731 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.027 3.973 4 H 0.121 0.879 5 C -0.220 4.220 6 N -0.309 5.309 7 C -0.031 4.031 8 C -0.222 4.222 9 C 0.294 3.706 10 O -0.403 6.403 11 C 0.276 3.724 12 O -0.376 6.376 13 N -0.267 5.267 14 C -0.064 4.064 15 C -0.090 4.090 16 C -0.197 4.197 17 C 0.093 3.907 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.237 4.237 28 C -0.106 4.106 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.249 0.751 43 H 0.150 0.850 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.150 0.850 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.251 -16.289 17.078 24.690 hybrid contribution -1.005 0.681 0.430 1.288 sum 6.246 -15.608 17.508 24.273 Atomic orbital electron populations 1.21802 0.95299 1.01518 1.02481 1.21934 0.96837 0.95593 1.02722 1.21285 0.95225 0.93699 0.87044 0.87929 1.22156 0.94608 1.02747 1.02499 1.47915 1.48508 1.26228 1.08250 1.22115 0.97001 1.00148 0.83840 1.22229 0.99884 0.99477 1.00660 1.20167 0.79651 0.81477 0.89343 1.90733 1.51654 1.66127 1.31821 1.20001 0.81004 0.81898 0.89534 1.90673 1.50971 1.65194 1.30762 1.42919 1.52692 1.20438 1.10688 1.17273 0.99019 1.01894 0.88223 1.20751 0.98028 0.98331 0.91882 1.20127 0.98922 1.01763 0.98901 1.19464 0.93164 0.90782 0.87263 1.83997 1.47672 1.46558 1.29411 1.21277 1.10497 1.17619 0.97454 0.89077 1.25305 0.98658 0.98379 0.94172 1.70030 1.38705 1.40529 1.00180 0.85777 0.79992 0.79664 0.77991 1.19460 1.20262 1.19473 1.20977 1.02710 1.06009 0.94044 1.20464 0.94927 0.97406 0.97800 0.92724 0.92581 0.92384 0.91156 0.90763 0.91959 0.91145 0.92032 0.86813 0.90865 0.91531 0.92684 0.91945 0.75061 0.84969 0.85992 0.91883 0.84955 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.21 37.16 0.34 -0.90 16 2 C -0.13 -0.90 4.92 -26.73 -0.13 -1.03 16 3 C 0.13 1.07 2.63 -67.93 -0.18 0.89 16 4 H 0.10 0.99 6.91 -51.93 -0.36 0.63 16 5 C -0.16 -1.04 9.19 37.16 0.34 -0.70 16 6 N -0.58 -5.82 1.84 -166.66 -0.31 -6.13 16 7 C 0.09 0.84 4.86 -4.04 -0.02 0.82 16 8 C -0.16 -1.56 8.86 37.15 0.33 -1.24 16 9 C 0.51 6.52 7.67 -11.65 -0.09 6.43 16 10 O -0.53 -7.52 15.82 5.49 0.09 -7.43 16 11 C 0.49 7.04 7.42 -11.65 -0.09 6.95 16 12 O -0.50 -7.67 9.06 5.46 0.05 -7.62 16 13 N -0.62 -9.10 5.35 -10.27 -0.05 -9.15 16 14 C 0.03 0.50 6.39 -83.69 -0.53 -0.04 16 15 C -0.07 -1.32 8.69 -39.40 -0.34 -1.66 16 16 C -0.18 -3.76 9.98 -39.42 -0.39 -4.16 16 17 C 0.15 3.51 6.65 -39.07 -0.26 3.25 16 18 O -0.17 -4.87 9.75 0.09 0.00 -4.87 16 19 C -0.39 -10.75 9.44 30.89 0.29 -10.46 16 20 H 0.09 2.29 5.29 -52.49 -0.28 2.01 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.92 13.67 55.48 0.76 -24.17 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.22 -4.58 9.12 -39.42 -0.36 -4.94 16 28 C -0.09 -1.53 9.94 -39.40 -0.39 -1.92 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 32 H 0.07 0.45 6.28 -51.93 -0.33 0.13 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.36 6.68 -51.93 -0.35 0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 1.27 5.45 -51.93 -0.28 0.99 16 38 H 0.07 0.52 6.43 -51.93 -0.33 0.19 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.46 5.02 -51.92 -0.26 0.20 16 41 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 42 H 0.41 5.23 8.27 -40.82 -0.34 4.89 16 43 H 0.13 2.34 5.95 -52.49 -0.31 2.02 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 45 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.13 2.76 5.71 -52.49 -0.30 2.46 16 47 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -30.89 375.35 -6.75 -37.65 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.34 Total: 8.62 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.58 Total: -7.72 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.40 Total: -39.44 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.14 Total: -19.92 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.89 -6.75 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350155127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.403 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds