Wall clock time and date at job start Tue Mar 31 2020 18:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08999 * 109.47015 * 55.00149 * 3 2 1 5 5 C 1.53008 * 109.47269 * 174.99731 * 3 2 1 6 6 N 1.46497 * 109.47485 * 295.00015 * 3 2 1 7 7 C 1.46503 * 120.00023 * 300.00155 * 6 3 2 8 8 C 1.52995 * 109.47424 * 97.44690 * 7 6 3 9 9 C 1.34783 * 120.00136 * 119.99536 * 6 3 2 10 10 O 1.21360 * 119.99564 * 356.26102 * 9 6 3 11 11 C 1.49311 * 119.99871 * 176.25760 * 9 6 3 12 12 O 1.21394 * 120.00205 * 5.71073 * 11 9 6 13 13 N 1.34782 * 119.99965 * 185.71390 * 11 9 6 14 14 C 1.39738 * 120.00025 * 175.02381 * 13 11 9 15 15 C 1.39002 * 120.00940 * 332.60033 * 14 13 11 16 16 C 1.37965 * 119.99354 * 179.74009 * 15 14 13 17 17 C 1.38938 * 120.00525 * 0.51660 * 16 15 14 18 18 O 1.35762 * 119.99073 * 179.74260 * 17 16 15 19 19 C 1.34805 * 116.99747 * 185.94262 * 18 17 16 20 20 H 1.07991 * 120.00069 * 5.52268 * 19 18 17 21 21 C 1.38657 * 119.99681 * 185.51742 * 19 18 17 22 22 N 1.31560 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47025 * 59.99919 * 23 21 19 25 25 H 1.48497 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46904 * 300.00014 * 23 21 19 27 27 C 1.38932 * 120.01561 * 359.75542 * 17 16 15 28 28 C 1.37971 * 120.00737 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46904 * 300.00046 * 1 2 3 31 31 H 1.09004 * 109.46623 * 59.99669 * 1 2 3 32 32 H 1.09001 * 109.47375 * 240.00201 * 2 1 3 33 33 H 1.08996 * 109.47009 * 119.99856 * 2 1 3 34 34 H 1.08999 * 109.46760 * 60.00262 * 5 3 2 35 35 H 1.08993 * 109.47066 * 300.00010 * 5 3 2 36 36 H 1.09001 * 109.47054 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47248 * 217.45093 * 7 6 3 38 38 H 1.09001 * 109.46810 * 337.44385 * 7 6 3 39 39 H 1.08996 * 109.47643 * 180.02562 * 8 7 6 40 40 H 1.09009 * 109.47026 * 300.00154 * 8 7 6 41 41 H 1.08997 * 109.47206 * 59.99313 * 8 7 6 42 42 H 0.96995 * 119.99920 * 355.01788 * 13 11 9 43 43 H 1.08001 * 119.99658 * 359.97438 * 15 14 13 44 44 H 1.08000 * 119.99704 * 180.25287 * 16 15 14 45 45 H 0.96999 * 119.99384 * 180.02562 * 22 21 19 46 46 H 1.07998 * 119.99738 * 179.97438 * 27 17 16 47 47 H 1.07996 * 120.00364 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4444 0.1258 6 7 1.6525 2.0975 -1.2518 7 6 2.1139 1.5590 -2.5337 8 6 1.0186 0.6810 -3.1420 9 6 0.8713 3.1956 -1.2241 10 8 0.4332 3.6020 -0.1678 11 6 0.5450 3.9118 -2.4929 12 8 0.8957 3.4487 -3.5588 13 7 -0.1388 5.0727 -2.4548 14 6 -0.3539 5.7958 -3.6310 15 6 0.5431 5.6879 -4.6873 16 6 0.3274 6.3978 -5.8505 17 6 -0.7805 7.2288 -5.9621 18 8 -0.9896 7.9312 -7.1048 19 6 -2.0112 8.8107 -7.1043 20 1 -2.5635 8.9962 -6.1950 21 6 -2.3529 9.4771 -8.2712 22 7 -1.6803 9.2507 -9.3790 23 14 -3.7681 10.6963 -8.2704 24 1 -3.4808 11.7875 -7.3050 25 1 -3.9287 11.2692 -9.6309 26 1 -5.0195 10.0017 -7.8743 27 6 -1.6742 7.3412 -4.9043 28 6 -1.4621 6.6272 -3.7429 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9995 0.9054 -0.7160 35 1 3.8532 0.9571 1.0571 36 1 3.9282 2.4721 0.1262 37 1 2.3398 2.3811 -3.2130 38 1 3.0119 0.9620 -2.3748 39 1 1.3621 0.2800 -4.0956 40 1 0.7928 -0.1411 -2.4627 41 1 0.1206 1.2781 -3.3008 42 1 -0.4816 5.4061 -1.6109 43 1 1.4067 5.0455 -4.5989 44 1 1.0222 6.3109 -6.6728 45 1 -1.9191 9.7172 -10.1952 46 1 -2.5351 7.9875 -4.9912 47 1 -2.1567 6.7149 -2.9206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350155127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:28 Heat of formation + Delta-G solvation = -76.790273 kcal Electronic energy + Delta-G solvation = -28842.907433 eV Core-core repulsion = 24798.549734 eV Total energy + Delta-G solvation = -4044.357699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32245 -40.94836 -39.99239 -38.37124 -38.07686 -35.58722 -34.31358 -34.13084 -31.91975 -31.88355 -30.50306 -29.82687 -27.45828 -26.19326 -24.72170 -24.27824 -23.96938 -22.93244 -21.70400 -20.49875 -19.88963 -19.12802 -18.87718 -18.33962 -17.69060 -17.21756 -16.73297 -16.38084 -16.05575 -15.84373 -15.49295 -15.37229 -15.10824 -14.95212 -14.64163 -14.60289 -14.54967 -14.44721 -14.12363 -13.59983 -13.59517 -13.40664 -13.30674 -13.28359 -12.94449 -12.73147 -12.68268 -12.48772 -12.29461 -12.13235 -12.08184 -11.93310 -11.84506 -11.57091 -11.41931 -11.07298 -10.60867 -10.39133 -9.88287 -9.81128 -8.63380 -8.45743 -6.12571 0.05538 0.50932 0.74973 1.22113 1.37457 1.47834 1.53473 2.06256 2.19191 2.38535 2.81524 3.14746 3.20261 3.50230 3.75973 4.01448 4.04362 4.07983 4.10724 4.16505 4.42313 4.47011 4.47528 4.49817 4.51893 4.60569 4.67676 4.72452 4.78272 4.89896 4.98571 5.02809 5.05968 5.07302 5.15464 5.19115 5.25357 5.28162 5.30278 5.35847 5.44725 5.48454 5.54537 5.65286 5.94953 6.02154 6.09191 6.23609 6.66534 6.89455 6.98685 7.78297 8.77060 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029767 B = 0.002180 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.418383 B =12839.556752 C =13133.185807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C 0.125 3.875 4 H 0.088 0.912 5 C -0.157 4.157 6 N -0.564 5.564 7 C 0.090 3.910 8 C -0.159 4.159 9 C 0.512 3.488 10 O -0.545 6.545 11 C 0.495 3.505 12 O -0.508 6.508 13 N -0.622 5.622 14 C 0.056 3.944 15 C -0.071 4.071 16 C -0.184 4.184 17 C 0.110 3.890 18 O -0.227 6.227 19 C -0.413 4.413 20 H 0.105 0.895 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.257 1.257 27 C -0.219 4.219 28 C -0.080 4.080 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.033 0.967 42 H 0.426 0.574 43 H 0.146 0.854 44 H 0.118 0.882 45 H 0.273 0.727 46 H 0.132 0.868 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -18.125 20.847 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.106 0.894 5 C -0.215 4.215 6 N -0.296 5.296 7 C -0.032 4.032 8 C -0.217 4.217 9 C 0.294 3.706 10 O -0.423 6.423 11 C 0.278 3.722 12 O -0.384 6.384 13 N -0.268 5.268 14 C -0.037 4.037 15 C -0.091 4.091 16 C -0.204 4.204 17 C 0.059 3.941 18 O -0.134 6.134 19 C -0.489 4.489 20 H 0.123 0.877 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.181 1.181 27 C -0.238 4.238 28 C -0.100 4.100 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.052 0.948 42 H 0.265 0.735 43 H 0.163 0.837 44 H 0.136 0.864 45 H 0.082 0.918 46 H 0.150 0.850 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.456 -18.227 20.268 28.260 hybrid contribution -0.876 0.930 -0.236 1.299 sum 6.581 -17.298 20.032 27.272 Atomic orbital electron populations 1.21796 0.96429 1.01852 1.01028 1.21930 0.95706 0.94580 1.04265 1.21508 0.96613 0.94190 0.85318 0.89412 1.22134 0.92766 1.02512 1.04077 1.48046 1.46991 1.25071 1.09509 1.22157 0.98083 0.99843 0.83085 1.22175 0.98621 0.99422 1.01492 1.19823 0.80373 0.82229 0.88186 1.90734 1.52768 1.66903 1.31903 1.20417 0.80021 0.81607 0.90176 1.90689 1.50826 1.65424 1.31508 1.42878 1.53157 1.20598 1.10172 1.17387 0.97654 1.00181 0.88482 1.20899 0.98768 0.98008 0.91440 1.20277 0.98426 1.01780 0.99886 1.19931 0.94844 0.91963 0.87381 1.83962 1.49148 1.48597 1.31668 1.21803 1.10592 1.18130 0.98364 0.87744 1.26604 1.01606 1.00418 0.93466 1.70184 1.41489 1.42977 1.01116 0.84646 0.76274 0.77014 0.78298 1.18076 1.19880 1.18083 1.21103 1.02145 1.06217 0.94361 1.20779 0.95405 0.96076 0.97703 0.91524 0.93463 0.94395 0.90189 0.88559 0.90821 0.89178 0.93154 0.88569 0.87805 0.90789 0.91301 0.94764 0.73548 0.83669 0.86359 0.91843 0.84999 0.82840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.21 71.98 0.66 -1.48 16 2 C -0.13 -1.29 4.92 30.59 0.15 -1.14 16 3 C 0.13 1.72 2.63 44.99 0.12 1.84 16 4 H 0.09 1.52 6.91 -2.39 -0.02 1.51 16 5 C -0.16 -1.48 9.19 71.98 0.66 -0.82 16 6 N -0.56 -10.20 1.84 -799.55 -1.47 -11.67 16 7 C 0.09 1.45 4.86 86.38 0.42 1.87 16 8 C -0.16 -2.72 8.86 71.98 0.64 -2.08 16 9 C 0.51 12.21 7.67 87.23 0.67 12.88 16 10 O -0.54 -14.69 15.82 -3.28 -0.05 -14.74 16 11 C 0.49 13.30 7.42 87.23 0.65 13.94 16 12 O -0.51 -14.94 9.06 -3.38 -0.03 -14.97 16 13 N -0.62 -16.79 5.35 -304.74 -1.63 -18.42 16 14 C 0.06 1.87 6.39 38.25 0.24 2.12 16 15 C -0.07 -2.64 8.69 22.39 0.19 -2.44 16 16 C -0.18 -8.04 9.98 22.37 0.22 -7.82 16 17 C 0.11 5.42 6.65 22.60 0.15 5.57 16 18 O -0.23 -13.54 9.75 -22.61 -0.22 -13.76 16 19 C -0.41 -23.61 9.44 67.92 0.64 -22.97 16 20 H 0.11 5.39 5.29 -2.92 -0.02 5.37 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.84 16 22 N -0.92 -56.17 13.67 21.61 0.30 -55.88 16 23 Si 1.02 42.23 29.55 68.60 2.03 44.26 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 27 C -0.22 -9.21 9.12 22.37 0.20 -9.00 16 28 C -0.08 -2.68 9.94 22.39 0.22 -2.46 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.04 0.68 6.36 -2.38 -0.02 0.66 16 32 H 0.08 0.70 6.28 -2.39 -0.01 0.68 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.54 6.68 -2.39 -0.02 0.53 16 35 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 1.97 5.45 -2.39 -0.01 1.96 16 38 H 0.10 1.09 6.43 -2.39 -0.02 1.07 16 39 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 0.97 5.02 -2.38 -0.01 0.96 16 41 H 0.03 0.78 6.93 -2.39 -0.02 0.76 16 42 H 0.43 9.64 8.27 -92.71 -0.77 8.88 16 43 H 0.15 4.99 5.95 -2.91 -0.02 4.97 16 44 H 0.12 5.12 8.06 -2.91 -0.02 5.10 16 45 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 46 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 47 H 0.15 3.93 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -71.63 375.35 5.48 -66.15 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.25 Total: 31.86 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 6.31 Total: -12.83 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.80 Total: -85.96 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.30 Total: -43.48 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.63 5.48 -66.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350155127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.640 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds