Wall clock time and date at job start Tue Mar 31 2020 18:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47360 * 2 1 4 4 H 1.09002 * 109.46848 * 305.00244 * 3 2 1 5 5 C 1.52998 * 109.47390 * 185.00038 * 3 2 1 6 6 N 1.46499 * 109.47049 * 64.99625 * 3 2 1 7 7 C 1.46500 * 120.00189 * 60.00660 * 6 3 2 8 8 C 1.53001 * 109.47371 * 95.62901 * 7 6 3 9 9 C 1.34780 * 120.00148 * 240.00153 * 6 3 2 10 10 O 1.21364 * 119.99972 * 4.60158 * 9 6 3 11 11 C 1.49322 * 120.00069 * 184.60227 * 9 6 3 12 12 O 1.21390 * 119.99731 * 5.30549 * 11 9 6 13 13 N 1.34771 * 119.99721 * 185.30848 * 11 9 6 14 14 C 1.39743 * 119.99948 * 174.43694 * 13 11 9 15 15 C 1.38995 * 120.00930 * 329.40567 * 14 13 11 16 16 C 1.37962 * 119.99633 * 179.73912 * 15 14 13 17 17 C 1.38940 * 120.00221 * 0.50822 * 16 15 14 18 18 O 1.35762 * 119.98920 * 179.74511 * 17 16 15 19 19 C 1.34800 * 116.99880 * 185.35250 * 18 17 16 20 20 H 1.07995 * 119.99991 * 5.35587 * 19 18 17 21 21 C 1.38657 * 119.99964 * 185.35591 * 19 18 17 22 22 N 1.31552 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99764 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47202 * 89.99962 * 23 21 19 25 25 H 1.48500 * 109.46750 * 209.99811 * 23 21 19 26 26 H 1.48506 * 109.47193 * 329.99765 * 23 21 19 27 27 C 1.38933 * 120.01734 * 359.76384 * 17 16 15 28 28 C 1.37967 * 120.00530 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46909 * 300.00400 * 1 2 3 31 31 H 1.08995 * 109.46919 * 60.00436 * 1 2 3 32 32 H 1.08998 * 109.47354 * 239.99885 * 2 1 3 33 33 H 1.09005 * 109.46987 * 119.99680 * 2 1 3 34 34 H 1.09002 * 109.47125 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.46554 * 299.99871 * 5 3 2 36 36 H 1.08994 * 109.47141 * 59.99843 * 5 3 2 37 37 H 1.08996 * 109.46973 * 215.63315 * 7 6 3 38 38 H 1.09007 * 109.46921 * 335.63003 * 7 6 3 39 39 H 1.08997 * 109.46935 * 180.02562 * 8 7 6 40 40 H 1.08992 * 109.46944 * 300.00009 * 8 7 6 41 41 H 1.09002 * 109.46567 * 60.00262 * 8 7 6 42 42 H 0.97006 * 120.00404 * 354.43512 * 13 11 9 43 43 H 1.08007 * 120.00052 * 359.97438 * 15 14 13 44 44 H 1.08000 * 119.99937 * 180.24819 * 16 15 14 45 45 H 0.97000 * 120.00170 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.99559 * 179.97438 * 27 17 16 47 47 H 1.07999 * 120.00437 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 2.1139 1.5591 2.5337 8 6 3.3747 2.3046 2.9759 9 6 0.8714 3.1955 1.2241 10 8 0.4206 3.5931 0.1697 11 6 0.5607 3.9229 2.4906 12 8 1.0878 3.5839 3.5301 13 7 -0.3050 4.9558 2.4794 14 6 -0.6852 5.5618 3.6798 15 6 -0.7367 4.8140 4.8503 16 6 -1.1069 5.4138 6.0363 17 6 -1.4383 6.7629 6.0587 18 8 -1.8074 7.3517 7.2250 19 6 -2.2225 8.6325 7.1593 20 1 -2.3327 9.1160 6.1999 21 6 -2.5080 9.3294 8.3236 22 7 -2.3742 8.7403 9.4923 23 14 -3.0839 11.1040 8.2326 24 1 -4.5658 11.1396 8.1427 25 1 -2.6443 11.8302 9.4511 26 1 -2.4993 11.7532 7.0316 27 6 -1.3923 7.5095 4.8879 28 6 -1.0170 6.9114 3.7026 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9283 2.4720 -0.1253 35 1 3.9994 0.9053 0.7162 36 1 3.8532 0.9570 -1.0570 37 1 1.3337 1.6879 3.2838 38 1 2.3393 0.4984 2.4223 39 1 3.7182 1.9037 3.9295 40 1 4.1548 2.1757 2.2258 41 1 3.1493 3.3652 3.0873 42 1 -0.6643 5.2786 1.6381 43 1 -0.4834 3.7642 4.8321 44 1 -1.1431 4.8337 6.9466 45 1 -2.5743 9.2277 10.3068 46 1 -1.6504 8.5581 4.9057 47 1 -0.9817 7.4916 2.7924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350155130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:32 Heat of formation + Delta-G solvation = -60.381092 kcal Electronic energy + Delta-G solvation = -28815.540140 eV Core-core repulsion = 24771.893997 eV Total energy + Delta-G solvation = -4043.646144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.19177 -39.54388 -38.52417 -37.35107 -36.58909 -34.29768 -33.53981 -32.22956 -30.56516 -30.28986 -30.21436 -28.31327 -25.70060 -25.02507 -23.77001 -23.59530 -22.38527 -21.60597 -20.44670 -19.52063 -18.22222 -17.93654 -17.40892 -17.15137 -16.21748 -16.11713 -15.67959 -14.86509 -14.69985 -14.56852 -14.28517 -14.16019 -13.82638 -13.78787 -13.60704 -13.53990 -13.40178 -13.11529 -12.87290 -12.58258 -12.54429 -12.37275 -12.07709 -11.86477 -11.71234 -11.61660 -11.53126 -11.32299 -11.21333 -11.12538 -11.03174 -10.88926 -10.68856 -10.46745 -9.75843 -9.43479 -9.23752 -9.02227 -8.75732 -8.27202 -6.98318 -6.48849 -4.06354 1.26365 2.13286 2.17638 2.33221 3.10001 3.11824 3.16664 3.22922 3.42104 3.93823 4.25559 4.42762 4.53276 4.63842 4.72305 4.80938 5.04084 5.06709 5.10596 5.22794 5.24521 5.25502 5.38255 5.40022 5.50682 5.52424 5.60876 5.67644 5.69472 5.73893 5.77990 5.89933 5.98595 6.03558 6.11961 6.13804 6.24696 6.31748 6.72288 6.73123 6.81681 6.94620 7.05879 7.16549 7.31815 7.45273 7.67440 7.74018 7.95385 8.10522 8.96423 9.65863 10.68862 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029142 B = 0.002186 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.590344 B =12806.892349 C =13076.131162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.131 3.869 4 H 0.103 0.897 5 C -0.162 4.162 6 N -0.576 5.576 7 C 0.101 3.899 8 C -0.165 4.165 9 C 0.511 3.489 10 O -0.526 6.526 11 C 0.492 3.508 12 O -0.498 6.498 13 N -0.625 5.625 14 C 0.028 3.972 15 C -0.066 4.066 16 C -0.177 4.177 17 C 0.148 3.852 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.218 4.218 28 C -0.084 4.084 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.413 0.587 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.271 0.729 46 H 0.133 0.867 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.731 -15.043 -18.005 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.028 3.972 4 H 0.121 0.879 5 C -0.220 4.220 6 N -0.310 5.310 7 C -0.020 4.020 8 C -0.222 4.222 9 C 0.294 3.706 10 O -0.403 6.403 11 C 0.274 3.726 12 O -0.374 6.374 13 N -0.270 5.270 14 C -0.064 4.064 15 C -0.086 4.086 16 C -0.197 4.197 17 C 0.094 3.906 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.238 4.238 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.249 0.751 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.151 0.849 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.827 -15.124 -17.347 24.649 hybrid contribution -0.339 1.121 -0.472 1.262 sum 8.488 -14.003 -17.818 24.200 Atomic orbital electron populations 1.21724 0.95211 1.01522 1.02331 1.21908 0.96847 0.95601 1.02733 1.21275 0.95266 0.93635 0.87000 0.87925 1.22217 0.94641 1.02702 1.02451 1.47906 1.48294 1.26551 1.08264 1.21903 0.98843 0.97251 0.84034 1.22229 0.96511 1.02616 1.00892 1.20202 0.79498 0.81541 0.89384 1.90733 1.51167 1.66402 1.31974 1.19993 0.80669 0.82541 0.89364 1.90736 1.49271 1.64709 1.32701 1.42915 1.42708 1.31756 1.09605 1.17239 1.11240 0.92390 0.85523 1.20626 0.98035 0.99236 0.90722 1.20106 1.08705 0.92796 0.98116 1.19454 0.92125 0.92209 0.86802 1.83994 1.70523 1.27452 1.25665 1.21328 1.44757 0.86045 0.94686 0.89005 1.25307 0.96984 1.00081 0.94156 1.70034 1.44622 1.37208 0.97556 0.85706 0.79039 0.80296 0.78360 1.19834 1.20238 1.19168 1.20983 1.09732 1.01087 0.92007 1.20483 1.00317 0.91811 0.97831 0.92648 0.92789 0.92489 0.90616 0.91341 0.92074 0.91766 0.91299 0.88009 0.90865 0.91657 0.93128 0.91203 0.75097 0.85465 0.85992 0.91929 0.84944 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.80 37.16 0.36 -0.82 16 2 C -0.13 -0.88 5.36 -26.73 -0.14 -1.02 16 3 C 0.13 1.07 2.63 -67.93 -0.18 0.90 16 4 H 0.10 0.99 6.91 -51.93 -0.36 0.63 16 5 C -0.16 -1.07 8.24 37.16 0.31 -0.76 16 6 N -0.58 -5.84 1.84 -166.66 -0.31 -6.14 16 7 C 0.10 0.95 4.92 -4.04 -0.02 0.93 16 8 C -0.16 -1.60 9.42 37.16 0.35 -1.25 16 9 C 0.51 6.52 7.69 -11.64 -0.09 6.43 16 10 O -0.53 -7.51 15.82 5.48 0.09 -7.42 16 11 C 0.49 7.03 7.36 -11.65 -0.09 6.95 16 12 O -0.50 -7.69 8.84 5.46 0.05 -7.64 16 13 N -0.62 -9.13 5.34 -10.27 -0.05 -9.18 16 14 C 0.03 0.50 6.33 -83.69 -0.53 -0.03 16 15 C -0.07 -1.24 8.66 -39.40 -0.34 -1.58 16 16 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 17 C 0.15 3.53 6.65 -39.06 -0.26 3.27 16 18 O -0.17 -4.86 9.75 0.10 0.00 -4.86 16 19 C -0.39 -10.74 9.44 30.89 0.29 -10.44 16 20 H 0.09 2.31 5.28 -52.49 -0.28 2.03 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 23 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 27 C -0.22 -4.60 9.13 -39.42 -0.36 -4.96 16 28 C -0.08 -1.50 9.95 -39.40 -0.39 -1.90 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.42 6.50 -51.93 -0.34 0.08 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.39 6.60 -51.93 -0.34 0.05 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 1.12 5.90 -51.93 -0.31 0.82 16 38 H 0.07 0.52 6.36 -51.93 -0.33 0.19 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.43 6.07 -51.93 -0.32 0.11 16 41 H 0.07 0.87 6.34 -51.93 -0.33 0.54 16 42 H 0.41 5.24 8.28 -40.82 -0.34 4.90 16 43 H 0.13 2.24 6.21 -52.48 -0.33 1.91 16 44 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.13 2.77 5.70 -52.48 -0.30 2.47 16 47 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -30.89 378.38 -6.84 -37.74 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.48 Total: 8.27 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.58 Total: -7.48 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.40 Total: -39.47 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.14 Total: -19.93 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.89 -6.84 -37.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350155130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.644 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds