Wall clock time and date at job start Tue Mar 31 2020 18:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47360 * 2 1 4 4 H 1.09002 * 109.46848 * 305.00244 * 3 2 1 5 5 C 1.52998 * 109.47390 * 185.00038 * 3 2 1 6 6 N 1.46499 * 109.47049 * 64.99625 * 3 2 1 7 7 C 1.46500 * 120.00189 * 60.00660 * 6 3 2 8 8 C 1.53001 * 109.47371 * 95.62901 * 7 6 3 9 9 C 1.34780 * 120.00148 * 240.00153 * 6 3 2 10 10 O 1.21364 * 119.99972 * 4.60158 * 9 6 3 11 11 C 1.49322 * 120.00069 * 184.60227 * 9 6 3 12 12 O 1.21390 * 119.99731 * 5.30549 * 11 9 6 13 13 N 1.34771 * 119.99721 * 185.30848 * 11 9 6 14 14 C 1.39743 * 119.99948 * 174.43694 * 13 11 9 15 15 C 1.38995 * 120.00930 * 329.40567 * 14 13 11 16 16 C 1.37962 * 119.99633 * 179.73912 * 15 14 13 17 17 C 1.38940 * 120.00221 * 0.50822 * 16 15 14 18 18 O 1.35762 * 119.98920 * 179.74511 * 17 16 15 19 19 C 1.34800 * 116.99880 * 185.35250 * 18 17 16 20 20 H 1.07995 * 119.99991 * 5.35587 * 19 18 17 21 21 C 1.38657 * 119.99964 * 185.35591 * 19 18 17 22 22 N 1.31552 * 119.99990 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99764 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47202 * 89.99962 * 23 21 19 25 25 H 1.48500 * 109.46750 * 209.99811 * 23 21 19 26 26 H 1.48506 * 109.47193 * 329.99765 * 23 21 19 27 27 C 1.38933 * 120.01734 * 359.76384 * 17 16 15 28 28 C 1.37967 * 120.00530 * 359.97438 * 27 17 16 29 29 H 1.08999 * 109.47421 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46909 * 300.00400 * 1 2 3 31 31 H 1.08995 * 109.46919 * 60.00436 * 1 2 3 32 32 H 1.08998 * 109.47354 * 239.99885 * 2 1 3 33 33 H 1.09005 * 109.46987 * 119.99680 * 2 1 3 34 34 H 1.09002 * 109.47125 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.46554 * 299.99871 * 5 3 2 36 36 H 1.08994 * 109.47141 * 59.99843 * 5 3 2 37 37 H 1.08996 * 109.46973 * 215.63315 * 7 6 3 38 38 H 1.09007 * 109.46921 * 335.63003 * 7 6 3 39 39 H 1.08997 * 109.46935 * 180.02562 * 8 7 6 40 40 H 1.08992 * 109.46944 * 300.00009 * 8 7 6 41 41 H 1.09002 * 109.46567 * 60.00262 * 8 7 6 42 42 H 0.97006 * 120.00404 * 354.43512 * 13 11 9 43 43 H 1.08007 * 120.00052 * 359.97438 * 15 14 13 44 44 H 1.08000 * 119.99937 * 180.24819 * 16 15 14 45 45 H 0.97000 * 120.00170 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.99559 * 179.97438 * 27 17 16 47 47 H 1.07999 * 120.00437 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0975 1.2518 7 6 2.1139 1.5591 2.5337 8 6 3.3747 2.3046 2.9759 9 6 0.8714 3.1955 1.2241 10 8 0.4206 3.5931 0.1697 11 6 0.5607 3.9229 2.4906 12 8 1.0878 3.5839 3.5301 13 7 -0.3050 4.9558 2.4794 14 6 -0.6852 5.5618 3.6798 15 6 -0.7367 4.8140 4.8503 16 6 -1.1069 5.4138 6.0363 17 6 -1.4383 6.7629 6.0587 18 8 -1.8074 7.3517 7.2250 19 6 -2.2225 8.6325 7.1593 20 1 -2.3327 9.1160 6.1999 21 6 -2.5080 9.3294 8.3236 22 7 -2.3742 8.7403 9.4923 23 14 -3.0839 11.1040 8.2326 24 1 -4.5658 11.1396 8.1427 25 1 -2.6443 11.8302 9.4511 26 1 -2.4993 11.7532 7.0316 27 6 -1.3923 7.5095 4.8879 28 6 -1.0170 6.9114 3.7026 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9283 2.4720 -0.1253 35 1 3.9994 0.9053 0.7162 36 1 3.8532 0.9570 -1.0570 37 1 1.3337 1.6879 3.2838 38 1 2.3393 0.4984 2.4223 39 1 3.7182 1.9037 3.9295 40 1 4.1548 2.1757 2.2258 41 1 3.1493 3.3652 3.0873 42 1 -0.6643 5.2786 1.6381 43 1 -0.4834 3.7642 4.8321 44 1 -1.1431 4.8337 6.9466 45 1 -2.5743 9.2277 10.3068 46 1 -1.6504 8.5581 4.9057 47 1 -0.9817 7.4916 2.7924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350155130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:31 Heat of formation + Delta-G solvation = -78.996539 kcal Electronic energy + Delta-G solvation = -28816.347367 eV Core-core repulsion = 24771.893997 eV Total energy + Delta-G solvation = -4044.453370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.30070 -40.94281 -39.97761 -38.36089 -38.06443 -35.58620 -34.43691 -34.14504 -31.91682 -31.29750 -30.91852 -29.85449 -27.46774 -26.25230 -24.54707 -24.37757 -23.96228 -22.93767 -21.69257 -20.45765 -19.87886 -19.16156 -18.89041 -18.34620 -17.67401 -17.15213 -16.77624 -16.37549 -16.10111 -15.78919 -15.49317 -15.47784 -15.18551 -14.79012 -14.68854 -14.57112 -14.45105 -14.24033 -14.15871 -13.82368 -13.60320 -13.37748 -13.35152 -13.23653 -13.01422 -12.78187 -12.63148 -12.44510 -12.24327 -12.16307 -12.10471 -11.92150 -11.82685 -11.57359 -11.39364 -11.04036 -10.60382 -10.45498 -9.87669 -9.85428 -8.64751 -8.46189 -6.12939 0.06392 0.50592 0.74196 1.22864 1.37432 1.46318 1.54704 2.06861 2.18743 2.38396 2.81024 3.14589 3.21455 3.49253 3.75358 4.01604 4.04270 4.07801 4.09580 4.15238 4.41871 4.46538 4.47453 4.52625 4.53562 4.60562 4.65934 4.72844 4.79187 4.90970 4.95423 5.03225 5.05461 5.10478 5.13593 5.18901 5.24258 5.29234 5.34284 5.37514 5.41476 5.50224 5.53193 5.64791 5.93945 6.01930 6.08712 6.23823 6.66376 6.90537 6.98432 7.77897 8.76851 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.029142 B = 0.002186 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.590344 B =12806.892349 C =13076.131162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.126 3.874 4 H 0.088 0.912 5 C -0.157 4.157 6 N -0.565 5.565 7 C 0.101 3.899 8 C -0.160 4.160 9 C 0.512 3.488 10 O -0.544 6.544 11 C 0.494 3.506 12 O -0.507 6.507 13 N -0.624 5.624 14 C 0.056 3.944 15 C -0.067 4.067 16 C -0.184 4.184 17 C 0.111 3.889 18 O -0.227 6.227 19 C -0.412 4.412 20 H 0.106 0.894 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.019 2.981 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.251 1.251 27 C -0.219 4.219 28 C -0.078 4.078 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.426 0.574 43 H 0.141 0.859 44 H 0.119 0.881 45 H 0.273 0.727 46 H 0.132 0.868 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.975 -16.203 -21.256 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.025 3.975 4 H 0.106 0.894 5 C -0.215 4.215 6 N -0.297 5.297 7 C -0.021 4.021 8 C -0.217 4.217 9 C 0.294 3.706 10 O -0.422 6.422 11 C 0.276 3.724 12 O -0.383 6.383 13 N -0.270 5.270 14 C -0.037 4.037 15 C -0.087 4.087 16 C -0.204 4.204 17 C 0.060 3.940 18 O -0.134 6.134 19 C -0.488 4.488 20 H 0.123 0.877 21 C -0.221 4.221 22 N -0.558 5.558 23 Si 0.838 3.162 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.174 1.174 27 C -0.239 4.239 28 C -0.098 4.098 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.264 0.736 43 H 0.159 0.841 44 H 0.137 0.863 45 H 0.082 0.918 46 H 0.150 0.850 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.108 -16.346 -20.673 28.226 hybrid contribution -0.558 1.145 0.241 1.296 sum 9.550 -15.201 -20.432 27.198 Atomic orbital electron populations 1.21723 0.96331 1.01875 1.00886 1.21907 0.95727 0.94470 1.04355 1.21498 0.96525 0.94243 0.85278 0.89397 1.22189 0.92950 1.02352 1.04008 1.48035 1.46793 1.25396 1.09520 1.21958 0.98053 0.98884 0.83183 1.22169 0.97068 1.00644 1.01867 1.19855 0.80239 0.82262 0.88230 1.90734 1.52274 1.67175 1.32048 1.20399 0.79988 0.81998 0.89982 1.90751 1.49394 1.64706 1.33455 1.42872 1.43181 1.31954 1.09033 1.17354 1.07906 0.92278 0.86150 1.20771 0.97631 0.99932 0.90367 1.20256 1.08762 0.92204 0.99147 1.19920 0.93842 0.93304 0.86939 1.83960 1.73389 1.28160 1.27846 1.21844 1.45093 0.86280 0.95609 0.87710 1.26602 0.96980 1.05045 0.93475 1.70185 1.47589 1.39497 0.98493 0.84583 0.78786 0.73945 0.78891 1.18843 1.19840 1.17436 1.21104 1.09454 1.01093 0.92232 1.20796 0.98785 0.92096 0.98138 0.91430 0.94765 0.93387 0.88430 0.90203 0.93333 0.90773 0.89250 0.89707 0.87828 0.90993 0.91573 0.94173 0.73585 0.84130 0.86343 0.91841 0.85020 0.82884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.80 71.98 0.71 -1.33 16 2 C -0.13 -1.24 5.36 30.60 0.16 -1.08 16 3 C 0.13 1.73 2.63 44.99 0.12 1.85 16 4 H 0.09 1.52 6.91 -2.39 -0.02 1.51 16 5 C -0.16 -1.54 8.24 71.98 0.59 -0.95 16 6 N -0.56 -10.24 1.84 -799.54 -1.47 -11.71 16 7 C 0.10 1.64 4.92 86.38 0.43 2.06 16 8 C -0.16 -2.77 9.42 71.98 0.68 -2.10 16 9 C 0.51 12.23 7.69 87.23 0.67 12.90 16 10 O -0.54 -14.67 15.82 -3.29 -0.05 -14.72 16 11 C 0.49 13.30 7.36 87.23 0.64 13.94 16 12 O -0.51 -15.01 8.84 -3.37 -0.03 -15.04 16 13 N -0.62 -16.86 5.34 -304.75 -1.63 -18.48 16 14 C 0.06 1.88 6.33 38.24 0.24 2.12 16 15 C -0.07 -2.48 8.66 22.39 0.19 -2.28 16 16 C -0.18 -8.02 9.98 22.37 0.22 -7.80 16 17 C 0.11 5.47 6.65 22.60 0.15 5.62 16 18 O -0.23 -13.52 9.75 -22.57 -0.22 -13.74 16 19 C -0.41 -23.56 9.44 67.92 0.64 -22.91 16 20 H 0.11 5.41 5.28 -2.91 -0.02 5.39 16 21 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 22 N -0.92 -56.13 13.67 21.61 0.30 -55.83 16 23 Si 1.02 42.24 29.55 68.60 2.03 44.27 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 C -0.22 -9.23 9.13 22.37 0.20 -9.03 16 28 C -0.08 -2.64 9.95 22.39 0.22 -2.41 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.59 7.75 -2.39 -0.02 0.57 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.64 6.50 -2.38 -0.02 0.62 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.60 6.60 -2.39 -0.02 0.58 16 36 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 1.73 5.90 -2.39 -0.01 1.71 16 38 H 0.10 1.10 6.36 -2.38 -0.02 1.08 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 0.93 6.07 -2.39 -0.01 0.92 16 41 H 0.04 0.95 6.34 -2.39 -0.02 0.93 16 42 H 0.43 9.67 8.28 -92.70 -0.77 8.90 16 43 H 0.14 4.81 6.21 -2.91 -0.02 4.79 16 44 H 0.12 5.12 8.06 -2.91 -0.02 5.09 16 45 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.13 5.51 5.70 -2.91 -0.02 5.50 16 47 H 0.15 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -71.61 378.38 5.51 -66.09 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.24 Total: 31.42 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 6.34 Total: -12.25 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.80 Total: -86.03 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.30 Total: -43.50 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -71.61 5.51 -66.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350155130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.902 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds