Wall clock time and date at job start Tue Mar 31 2020 17:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47335 * 87.93863 * 3 2 1 5 5 C 1.37102 * 119.99557 * 85.27281 * 4 3 2 6 6 H 1.08006 * 119.99561 * 171.58213 * 5 4 3 7 7 C 1.38943 * 120.00067 * 351.57622 * 5 4 3 8 8 N 1.31409 * 120.00420 * 345.51936 * 7 5 4 9 9 Si 1.86804 * 119.99861 * 165.52259 * 7 5 4 10 10 H 1.48496 * 109.47587 * 90.00098 * 9 7 5 11 11 H 1.48504 * 109.47071 * 210.00250 * 9 7 5 12 12 H 1.48506 * 109.47086 * 329.99808 * 9 7 5 13 13 C 1.34776 * 120.00399 * 265.27430 * 4 3 2 14 14 O 1.21287 * 120.00264 * 184.41741 * 13 4 3 15 15 C 1.50703 * 119.99931 * 4.42075 * 13 4 3 16 16 C 1.54875 * 119.93261 * 61.84488 * 15 13 4 17 17 C 1.55150 * 81.98447 * 161.42163 * 16 15 13 18 18 C 1.55688 * 119.16026 * 160.36160 * 15 13 4 19 19 C 1.56753 * 101.77070 * 63.29803 * 17 16 15 20 20 N 1.49192 * 99.23332 * 316.69608 * 19 17 16 21 21 C 1.34772 * 129.44517 * 179.82504 * 20 19 17 22 22 O 1.21516 * 120.00382 * 184.69507 * 21 20 19 23 23 O 1.34639 * 119.99969 * 4.68933 * 21 20 19 24 24 C 1.45198 * 116.99998 * 183.06076 * 23 21 20 25 25 C 1.52991 * 109.47276 * 58.82903 * 24 23 21 26 26 C 1.53001 * 109.46986 * 178.82598 * 24 23 21 27 27 C 1.53001 * 109.47372 * 298.82447 * 24 23 21 28 28 H 4.40644 * 5.51463 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47026 * 207.94086 * 3 2 1 30 30 H 1.09003 * 109.47244 * 327.94450 * 3 2 1 31 31 H 0.96996 * 120.00073 * 179.97438 * 8 7 5 32 32 H 1.08999 * 114.45314 * 274.08022 * 16 15 13 33 33 H 1.09000 * 114.45003 * 47.51964 * 16 15 13 34 34 H 1.09003 * 121.02043 * 197.20281 * 17 16 15 35 35 H 1.09003 * 114.53598 * 311.77507 * 18 15 13 36 36 H 1.08993 * 114.53539 * 85.48866 * 18 15 13 37 37 H 1.09000 * 111.43929 * 199.19591 * 19 17 16 38 38 H 1.08993 * 111.44772 * 74.20422 * 19 17 16 39 39 H 1.09003 * 109.47423 * 64.33313 * 25 24 23 40 40 H 1.08999 * 109.47470 * 184.33968 * 25 24 23 41 41 H 1.09004 * 109.47108 * 304.34215 * 25 24 23 42 42 H 1.09009 * 109.47242 * 60.00257 * 26 24 23 43 43 H 1.09002 * 109.47068 * 180.02562 * 26 24 23 44 44 H 1.08997 * 109.47547 * 300.00287 * 26 24 23 45 45 H 1.09005 * 109.46552 * 67.29920 * 27 24 23 46 46 H 1.08999 * 109.47313 * 187.29478 * 27 24 23 47 47 H 1.09000 * 109.47289 * 307.30245 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0488 -1.3803 5 6 3.2701 1.1094 -2.1012 6 1 3.7555 1.0912 -3.0659 7 6 2.7831 2.3065 -1.5910 8 7 1.9530 2.2973 -0.5723 9 14 3.3082 3.9291 -2.3531 10 1 2.3635 4.2949 -3.4388 11 1 3.3019 4.9894 -1.3134 12 1 4.6770 3.7930 -2.9129 13 6 3.4502 -1.2328 -1.9414 14 8 3.9298 -1.2675 -3.0549 15 6 3.2074 -2.5136 -1.1853 16 6 1.7669 -2.9078 -0.7752 17 6 2.4224 -4.3070 -0.6348 18 6 3.1316 -3.8556 -1.9709 19 6 3.4628 -4.0592 0.5111 20 7 4.0025 -2.7422 0.0638 21 6 4.9486 -1.9674 0.6303 22 8 5.2001 -0.8748 0.1617 23 8 5.6152 -2.4040 1.7155 24 6 6.5718 -1.4899 2.3136 25 6 5.8556 -0.2045 2.7326 26 6 7.2037 -2.1455 3.5431 27 6 7.6640 -1.1565 1.2953 28 1 -1.0501 0.0002 -0.0001 29 1 3.0089 0.9087 0.4815 30 1 3.0097 -0.8702 0.5454 31 1 1.6133 3.1330 -0.2159 32 1 1.4338 -2.4795 0.1701 33 1 1.0308 -2.8216 -1.5745 34 1 1.8144 -5.2110 -0.5980 35 1 2.4841 -3.8310 -2.8474 36 1 4.0968 -4.3270 -2.1558 37 1 4.2378 -4.8257 0.5183 38 1 2.9747 -3.9807 1.4825 39 1 5.1302 -0.4309 3.5141 40 1 6.5854 0.5114 3.1106 41 1 5.3407 0.2217 1.8716 42 1 7.7141 -3.0613 3.2446 43 1 7.9215 -1.4591 3.9923 44 1 6.4257 -2.3831 4.2685 45 1 7.2346 -0.5750 0.4794 46 1 8.4487 -0.5765 1.7810 47 1 8.0865 -2.0802 0.9001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001358229969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:25 Heat of formation + Delta-G solvation = 48.889987 kcal Electronic energy + Delta-G solvation = -31978.158388 eV Core-core repulsion = 27939.250594 eV Total energy + Delta-G solvation = -4038.907794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41037 -39.88860 -37.78973 -36.41632 -35.05327 -33.92577 -32.03811 -31.87640 -31.12069 -28.24218 -27.31470 -27.19845 -26.32131 -25.07338 -24.81315 -23.65879 -21.48784 -20.26985 -19.53116 -18.47546 -17.82454 -17.26251 -16.50971 -16.34723 -15.79300 -15.59405 -15.09207 -14.77737 -14.42785 -14.11472 -13.91645 -13.71603 -13.60379 -13.47837 -13.24359 -12.46336 -12.42989 -12.24814 -12.03250 -11.98365 -11.81113 -11.70674 -11.65511 -11.51869 -11.33497 -11.24603 -11.07253 -10.99560 -10.90038 -10.87756 -10.44975 -10.20084 -10.12137 -9.95905 -9.59096 -9.27886 -9.16472 -8.64473 -8.38600 -8.31611 -7.79890 -6.21527 -3.72509 2.12812 3.19169 3.23489 3.28486 3.36066 3.73223 3.90500 4.16742 4.21743 4.27291 4.35328 4.54579 4.69822 4.81590 4.84712 4.88371 5.01499 5.03791 5.20424 5.42667 5.52664 5.60113 5.62419 5.63271 5.70898 5.73488 5.78581 5.83110 5.84958 5.99196 6.02546 6.04694 6.06288 6.08613 6.21244 6.26131 6.40665 6.51947 6.55192 6.57979 6.76228 7.12814 7.23022 7.61478 7.86014 8.10871 8.52476 8.74034 8.98451 9.21404 9.47168 10.00889 10.73165 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.006272 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.565933 B = 4463.237338 C = 5839.035472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.089 4.089 3 C 0.239 3.761 4 N -0.404 5.404 5 C -0.292 4.292 6 H 0.105 0.895 7 C 0.027 3.973 8 N -0.868 5.868 9 Si 0.927 3.073 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.474 3.526 14 O -0.586 6.586 15 C 0.143 3.857 16 C -0.140 4.140 17 C -0.141 4.141 18 C -0.111 4.111 19 C 0.119 3.881 20 N -0.601 5.601 21 C 0.665 3.335 22 O -0.528 6.528 23 O -0.367 6.367 24 C 0.137 3.863 25 C -0.186 4.186 26 C -0.137 4.137 27 C -0.181 4.181 28 H 0.195 0.805 29 H 0.113 0.887 30 H 0.058 0.942 31 H 0.267 0.733 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.092 0.908 46 H 0.065 0.935 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -11.498 9.519 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.091 4.091 3 C 0.116 3.884 4 N -0.118 5.118 5 C -0.420 4.420 6 H 0.123 0.877 7 C -0.175 4.175 8 N -0.508 5.508 9 Si 0.754 3.246 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.261 3.739 14 O -0.470 6.470 15 C 0.057 3.943 16 C -0.178 4.178 17 C -0.160 4.160 18 C -0.150 4.150 19 C -0.003 4.003 20 N -0.346 5.346 21 C 0.420 3.580 22 O -0.413 6.413 23 O -0.283 6.283 24 C 0.100 3.900 25 C -0.243 4.243 26 C -0.194 4.194 27 C -0.238 4.238 28 H 0.212 0.788 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.084 0.916 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.478 -10.817 9.065 14.535 hybrid contribution -0.099 0.990 -0.037 0.996 sum 3.379 -9.827 9.028 13.766 Atomic orbital electron populations 1.24132 0.95208 1.08487 1.02696 1.23275 0.94348 0.93687 0.97778 1.18527 0.83411 1.01785 0.84711 1.43393 1.53221 1.04898 1.10328 1.19747 1.35128 0.83594 1.03578 0.87750 1.25264 0.95531 0.99716 0.97011 1.70021 1.28416 1.27183 1.25163 0.85914 0.79369 0.80911 0.78417 1.20497 1.20869 1.19421 1.18587 0.86248 0.82668 0.86430 1.90517 1.49813 1.85905 1.20791 1.23106 0.90824 0.96008 0.84363 1.24268 0.95459 0.95041 1.03033 1.24862 0.97914 0.98461 0.94739 1.24329 1.01114 0.93915 0.95595 1.22880 0.95569 0.84513 0.97352 1.48092 1.38237 1.22216 1.26014 1.17354 0.78522 0.82649 0.79476 1.91121 1.66763 1.19236 1.64192 1.86265 1.52844 1.46908 1.42244 1.22007 0.86946 0.88580 0.92422 1.22542 1.01360 0.96629 1.03767 1.21832 1.00673 1.01323 0.95606 1.22498 0.97932 1.02632 1.00759 0.78767 0.86910 0.92380 0.92194 0.90218 0.88079 0.86013 0.87342 0.90838 0.90524 0.90145 0.92380 0.91335 0.88732 0.91761 0.90376 0.91683 0.88963 0.91562 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.11 19.25 29.55 0.57 -5.54 16 2 C -0.09 -2.08 8.93 -37.12 -0.33 -2.41 16 3 C 0.24 5.80 3.43 -6.83 -0.02 5.78 16 4 N -0.40 -10.78 2.01 -117.94 -0.24 -11.02 16 5 C -0.29 -8.43 9.49 -14.93 -0.14 -8.57 16 6 H 0.10 3.17 7.23 -52.48 -0.38 2.79 16 7 C 0.03 0.74 5.18 -17.47 -0.09 0.65 16 8 N -0.87 -23.25 8.39 55.50 0.47 -22.78 16 9 Si 0.93 21.49 29.58 -169.99 -5.03 16.46 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.47 12.19 6.03 -10.98 -0.07 12.13 16 14 O -0.59 -16.97 16.37 5.55 0.09 -16.88 16 15 C 0.14 2.82 1.42 -134.92 -0.19 2.63 16 16 C -0.14 -2.26 5.82 -28.74 -0.17 -2.43 16 17 C -0.14 -1.74 6.45 -91.01 -0.59 -2.33 16 18 C -0.11 -1.74 7.50 -26.77 -0.20 -1.94 16 19 C 0.12 1.55 7.35 -0.52 0.00 1.55 16 20 N -0.60 -10.79 2.63 -163.02 -0.43 -11.21 16 21 C 0.66 12.86 6.66 54.05 0.36 13.22 16 22 O -0.53 -11.93 8.66 -19.28 -0.17 -12.10 16 23 O -0.37 -6.01 9.69 -40.32 -0.39 -6.40 16 24 C 0.14 1.93 1.13 -90.62 -0.10 1.83 16 25 C -0.19 -2.72 8.41 37.15 0.31 -2.41 16 26 C -0.14 -1.40 8.85 37.16 0.33 -1.07 16 27 C -0.18 -2.61 8.28 37.16 0.31 -2.30 16 28 H 0.20 3.40 7.80 -54.09 -0.42 2.98 16 29 H 0.11 3.01 6.28 -51.93 -0.33 2.68 16 30 H 0.06 1.31 3.63 -51.93 -0.19 1.12 16 31 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.08 1.35 6.43 -51.93 -0.33 1.01 16 33 H 0.10 1.63 7.92 -51.93 -0.41 1.22 16 34 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.11 1.64 7.92 -51.93 -0.41 1.23 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.76 5.80 -51.93 -0.30 1.46 16 42 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.67 6.08 -51.93 -0.32 1.35 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -33.63 369.78 -7.02 -40.65 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.87 Total: 8.93 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.03 Total: 8.77 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: -0.20 Total: -45.02 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.47 Total: -35.37 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.63 -7.02 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358229969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.544 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds