Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47335 * 87.93863 * 3 2 1 5 5 C 1.37102 * 119.99557 * 85.27281 * 4 3 2 6 6 H 1.08006 * 119.99561 * 171.58213 * 5 4 3 7 7 C 1.38943 * 120.00067 * 351.57622 * 5 4 3 8 8 N 1.31409 * 120.00420 * 345.51936 * 7 5 4 9 9 Si 1.86804 * 119.99861 * 165.52259 * 7 5 4 10 10 H 1.48496 * 109.47587 * 90.00098 * 9 7 5 11 11 H 1.48504 * 109.47071 * 210.00250 * 9 7 5 12 12 H 1.48506 * 109.47086 * 329.99808 * 9 7 5 13 13 C 1.34776 * 120.00399 * 265.27430 * 4 3 2 14 14 O 1.21287 * 120.00264 * 184.41741 * 13 4 3 15 15 C 1.50703 * 119.99931 * 4.42075 * 13 4 3 16 16 C 1.54875 * 119.93261 * 61.84488 * 15 13 4 17 17 C 1.55150 * 81.98447 * 161.42163 * 16 15 13 18 18 C 1.55688 * 119.16026 * 160.36160 * 15 13 4 19 19 C 1.56753 * 101.77070 * 63.29803 * 17 16 15 20 20 N 1.49192 * 99.23332 * 316.69608 * 19 17 16 21 21 C 1.34772 * 129.44517 * 179.82504 * 20 19 17 22 22 O 1.21516 * 120.00382 * 184.69507 * 21 20 19 23 23 O 1.34639 * 119.99969 * 4.68933 * 21 20 19 24 24 C 1.45198 * 116.99998 * 183.06076 * 23 21 20 25 25 C 1.52991 * 109.47276 * 58.82903 * 24 23 21 26 26 C 1.53001 * 109.46986 * 178.82598 * 24 23 21 27 27 C 1.53001 * 109.47372 * 298.82447 * 24 23 21 28 28 H 4.40644 * 5.51463 * 180.02562 * 4 1 2 29 29 H 1.08996 * 109.47026 * 207.94086 * 3 2 1 30 30 H 1.09003 * 109.47244 * 327.94450 * 3 2 1 31 31 H 0.96996 * 120.00073 * 179.97438 * 8 7 5 32 32 H 1.08999 * 114.45314 * 274.08022 * 16 15 13 33 33 H 1.09000 * 114.45003 * 47.51964 * 16 15 13 34 34 H 1.09003 * 121.02043 * 197.20281 * 17 16 15 35 35 H 1.09003 * 114.53598 * 311.77507 * 18 15 13 36 36 H 1.08993 * 114.53539 * 85.48866 * 18 15 13 37 37 H 1.09000 * 111.43929 * 199.19591 * 19 17 16 38 38 H 1.08993 * 111.44772 * 74.20422 * 19 17 16 39 39 H 1.09003 * 109.47423 * 64.33313 * 25 24 23 40 40 H 1.08999 * 109.47470 * 184.33968 * 25 24 23 41 41 H 1.09004 * 109.47108 * 304.34215 * 25 24 23 42 42 H 1.09009 * 109.47242 * 60.00257 * 26 24 23 43 43 H 1.09002 * 109.47068 * 180.02562 * 26 24 23 44 44 H 1.08997 * 109.47547 * 300.00287 * 26 24 23 45 45 H 1.09005 * 109.46552 * 67.29920 * 27 24 23 46 46 H 1.08999 * 109.47313 * 187.29478 * 27 24 23 47 47 H 1.09000 * 109.47289 * 307.30245 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0488 -1.3803 5 6 3.2701 1.1094 -2.1012 6 1 3.7555 1.0912 -3.0659 7 6 2.7831 2.3065 -1.5910 8 7 1.9530 2.2973 -0.5723 9 14 3.3082 3.9291 -2.3531 10 1 2.3635 4.2949 -3.4388 11 1 3.3019 4.9894 -1.3134 12 1 4.6770 3.7930 -2.9129 13 6 3.4502 -1.2328 -1.9414 14 8 3.9298 -1.2675 -3.0549 15 6 3.2074 -2.5136 -1.1853 16 6 1.7669 -2.9078 -0.7752 17 6 2.4224 -4.3070 -0.6348 18 6 3.1316 -3.8556 -1.9709 19 6 3.4628 -4.0592 0.5111 20 7 4.0025 -2.7422 0.0638 21 6 4.9486 -1.9674 0.6303 22 8 5.2001 -0.8748 0.1617 23 8 5.6152 -2.4040 1.7155 24 6 6.5718 -1.4899 2.3136 25 6 5.8556 -0.2045 2.7326 26 6 7.2037 -2.1455 3.5431 27 6 7.6640 -1.1565 1.2953 28 1 -1.0501 0.0002 -0.0001 29 1 3.0089 0.9087 0.4815 30 1 3.0097 -0.8702 0.5454 31 1 1.6133 3.1330 -0.2159 32 1 1.4338 -2.4795 0.1701 33 1 1.0308 -2.8216 -1.5745 34 1 1.8144 -5.2110 -0.5980 35 1 2.4841 -3.8310 -2.8474 36 1 4.0968 -4.3270 -2.1558 37 1 4.2378 -4.8257 0.5183 38 1 2.9747 -3.9807 1.4825 39 1 5.1302 -0.4309 3.5141 40 1 6.5854 0.5114 3.1106 41 1 5.3407 0.2217 1.8716 42 1 7.7141 -3.0613 3.2446 43 1 7.9215 -1.4591 3.9923 44 1 6.4257 -2.3831 4.2685 45 1 7.2346 -0.5750 0.4794 46 1 8.4487 -0.5765 1.7810 47 1 8.0865 -2.0802 0.9001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358229969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = 27.789356 kcal Electronic energy + Delta-G solvation = -31979.073380 eV Core-core repulsion = 27939.250594 eV Total energy + Delta-G solvation = -4039.822786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.78507 -41.21508 -39.67872 -37.81030 -37.07541 -35.17993 -33.87954 -33.35350 -33.01214 -29.62624 -28.40956 -28.27603 -28.16696 -26.76573 -26.20324 -25.18046 -22.94997 -21.67492 -20.70116 -19.92862 -19.72643 -18.96153 -18.31140 -17.78784 -17.23174 -17.16039 -16.50530 -16.45430 -16.04841 -15.62088 -15.51690 -15.30130 -14.86150 -14.74668 -14.61314 -14.10858 -14.06115 -13.70948 -13.47405 -13.30612 -13.16726 -13.08386 -12.88529 -12.80692 -12.79444 -12.69535 -12.50311 -12.40686 -12.33010 -12.24564 -12.16139 -12.11972 -11.39373 -11.30598 -11.17241 -11.05287 -10.95787 -10.52014 -10.28880 -9.85855 -9.72071 -8.29295 -5.89914 0.76979 1.31032 1.33653 1.46897 1.78425 1.96025 2.10185 2.31038 2.44943 2.83006 3.08830 3.16449 3.21901 3.35320 3.53928 3.57664 3.77733 3.80505 3.90998 3.95361 4.13469 4.37659 4.45905 4.57709 4.59577 4.62980 4.71667 4.74169 4.75507 4.76189 4.82911 4.83624 4.89811 4.93839 5.00631 5.07187 5.12642 5.14826 5.20307 5.29755 5.38164 5.39921 5.46890 5.51071 5.98458 6.42596 6.52101 7.11489 7.21088 7.32769 7.44520 7.98777 8.62325 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010082 B = 0.006272 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2776.565933 B = 4463.237338 C = 5839.035472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.136 4.136 3 C 0.259 3.741 4 N -0.414 5.414 5 C -0.339 4.339 6 H 0.070 0.930 7 C -0.001 4.001 8 N -0.871 5.871 9 Si 0.986 3.014 10 H -0.270 1.270 11 H -0.265 1.265 12 H -0.280 1.280 13 C 0.460 3.540 14 O -0.638 6.638 15 C 0.111 3.889 16 C -0.137 4.137 17 C -0.087 4.087 18 C -0.112 4.112 19 C 0.113 3.887 20 N -0.606 5.606 21 C 0.656 3.344 22 O -0.572 6.572 23 O -0.358 6.358 24 C 0.127 3.873 25 C -0.181 4.181 26 C -0.127 4.127 27 C -0.176 4.176 28 H 0.235 0.765 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.271 0.729 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.178 0.822 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.093 0.907 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -13.719 12.091 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.138 4.138 3 C 0.136 3.864 4 N -0.128 5.128 5 C -0.467 4.467 6 H 0.088 0.912 7 C -0.203 4.203 8 N -0.509 5.509 9 Si 0.810 3.190 10 H -0.195 1.195 11 H -0.190 1.190 12 H -0.206 1.206 13 C 0.249 3.751 14 O -0.526 6.526 15 C 0.024 3.976 16 C -0.175 4.175 17 C -0.105 4.105 18 C -0.151 4.151 19 C -0.007 4.007 20 N -0.350 5.350 21 C 0.412 3.588 22 O -0.460 6.460 23 O -0.273 6.273 24 C 0.091 3.909 25 C -0.238 4.238 26 C -0.184 4.184 27 C -0.233 4.233 28 H 0.251 0.749 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.195 0.805 35 H 0.128 0.872 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.112 0.888 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.319 -13.076 11.697 17.697 hybrid contribution 0.281 1.724 -0.826 1.932 sum 2.599 -11.353 10.871 15.931 Atomic orbital electron populations 1.25001 0.96015 1.05983 1.00311 1.23312 0.94655 0.95902 0.99949 1.18161 0.84364 1.00605 0.83291 1.43527 1.53420 1.04862 1.11013 1.19605 1.37576 0.85953 1.03579 0.91155 1.25951 0.94967 1.01925 0.97421 1.70139 1.27757 1.27960 1.25071 0.85055 0.78385 0.77347 0.78212 1.19505 1.18989 1.20565 1.19681 0.84462 0.84489 0.86507 1.90445 1.51618 1.87229 1.23315 1.23173 0.93919 0.94431 0.86104 1.24259 0.93048 0.97784 1.02427 1.24867 0.96056 0.97939 0.91621 1.24417 1.01893 0.91388 0.97405 1.23338 0.96472 0.82349 0.98511 1.48146 1.37662 1.23855 1.25380 1.17627 0.78857 0.82381 0.79950 1.91124 1.68077 1.21337 1.65486 1.86276 1.52899 1.47161 1.40983 1.22409 0.86243 0.88668 0.93585 1.22472 1.01869 0.97471 1.02024 1.21839 1.01163 1.01946 0.93469 1.22431 0.98665 1.02404 0.99829 0.74859 0.90406 0.91051 0.91826 0.90849 0.88234 0.80521 0.87160 0.90867 0.87987 0.87824 0.91369 0.89324 0.93395 0.90788 0.87963 0.90697 0.93575 0.88816 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.48 19.25 74.32 1.43 -9.05 16 2 C -0.14 -6.46 8.93 31.13 0.28 -6.18 16 3 C 0.26 13.22 3.43 84.57 0.29 13.51 16 4 N -0.41 -23.67 2.01 -645.42 -1.30 -24.97 16 5 C -0.34 -21.05 9.49 84.04 0.80 -20.25 16 6 H 0.07 4.71 7.23 -2.91 -0.02 4.68 16 7 C 0.00 -0.03 5.18 84.93 0.44 0.41 16 8 N -0.87 -47.99 8.39 21.66 0.18 -47.81 16 9 Si 0.99 45.80 29.58 68.60 2.03 47.83 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 13 C 0.46 25.24 6.03 87.66 0.53 25.77 16 14 O -0.64 -39.97 16.37 -3.05 -0.05 -40.02 16 15 C 0.11 4.41 1.42 -0.25 0.00 4.41 16 16 C -0.14 -4.21 5.82 29.29 0.17 -4.04 16 17 C -0.09 -1.79 6.45 -11.05 -0.07 -1.86 16 18 C -0.11 -3.39 7.50 30.57 0.23 -3.16 16 19 C 0.11 2.54 7.35 87.17 0.64 3.18 16 20 N -0.61 -21.59 2.63 -900.08 -2.36 -23.95 16 21 C 0.66 26.17 6.66 129.79 0.86 27.03 16 22 O -0.57 -27.90 8.66 19.79 0.17 -27.73 16 23 O -0.36 -11.56 9.69 -55.48 -0.54 -12.10 16 24 C 0.13 3.50 1.13 -10.80 -0.01 3.49 16 25 C -0.18 -5.38 8.41 71.98 0.61 -4.78 16 26 C -0.13 -2.22 8.85 71.98 0.64 -1.58 16 27 C -0.18 -5.17 8.28 71.98 0.60 -4.57 16 28 H 0.23 7.35 7.80 -4.41 -0.03 7.32 16 29 H 0.08 4.46 6.28 -2.39 -0.02 4.44 16 30 H 0.07 3.38 3.63 -2.39 -0.01 3.37 16 31 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.07 2.35 6.43 -2.39 -0.02 2.34 16 33 H 0.10 3.08 7.92 -2.39 -0.02 3.06 16 34 H 0.18 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 3.25 7.92 -2.39 -0.02 3.23 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 1.91 5.80 -2.38 -0.01 1.90 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.05 1.80 6.08 -2.38 -0.01 1.79 16 46 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -83.21 369.78 6.53 -76.68 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: 0.98 Total: 29.74 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 7.42 Total: 22.33 kcal Atomic # 7 Polarization: -93.25 SS G_CDS: -3.48 Total: -96.73 kcal Atomic # 8 Polarization: -79.43 SS G_CDS: -0.42 Total: -79.85 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -83.21 6.53 -76.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358229969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.471 kcal (2) G-P(sol) polarization free energy of solvation -83.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds