Wall clock time and date at job start Tue Mar 31 2020 17:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47369 * 2 1 4 4 C 1.50694 * 109.47519 * 120.00226 * 2 1 3 5 5 O 1.21284 * 119.99580 * 359.97438 * 4 2 1 6 6 N 1.34770 * 120.00585 * 179.97438 * 4 2 1 7 7 C 1.46496 * 120.00566 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.47057 * 324.99763 * 7 6 4 9 9 C 1.52998 * 109.47495 * 84.99611 * 7 6 4 10 10 O 1.42904 * 109.46959 * 65.00328 * 9 7 6 11 11 C 1.50695 * 109.47339 * 205.00076 * 7 6 4 12 12 O 1.21289 * 120.00068 * 359.97438 * 11 7 6 13 13 N 1.34778 * 120.00041 * 179.97438 * 11 7 6 14 14 C 1.39925 * 119.99850 * 175.36854 * 13 11 7 15 15 C 1.38873 * 120.06818 * 214.80774 * 14 13 11 16 16 C 1.38116 * 119.93119 * 179.74680 * 15 14 13 17 17 C 1.38289 * 120.06548 * 0.53062 * 16 15 14 18 18 C 1.50703 * 119.92771 * 179.72396 * 17 16 15 19 19 C 1.50697 * 109.47129 * 270.02373 * 18 17 16 20 20 H 1.08004 * 119.99822 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00365 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99572 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00483 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47039 * 59.99742 * 23 21 19 25 25 H 1.48492 * 109.47197 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46864 * 300.00091 * 23 21 19 27 27 C 1.38281 * 120.14345 * 359.74187 * 17 16 15 28 28 C 1.38119 * 120.06729 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.46687 * 300.00084 * 1 2 3 30 30 H 1.08997 * 109.47215 * 59.99593 * 1 2 3 31 31 H 1.08993 * 109.47312 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46654 * 240.00434 * 2 1 3 33 33 H 1.09000 * 109.47284 * 60.00282 * 3 2 1 34 34 H 1.08999 * 109.47442 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.47048 * 300.00490 * 3 2 1 36 36 H 0.97002 * 119.99815 * 359.97438 * 6 4 2 37 37 H 1.09001 * 109.46919 * 305.00511 * 9 7 6 38 38 H 1.08994 * 109.47407 * 185.00489 * 9 7 6 39 39 H 0.96699 * 113.99951 * 180.02562 * 10 9 7 40 40 H 0.97002 * 120.00337 * 355.36065 * 13 11 7 41 41 H 1.08000 * 120.03675 * 0.02737 * 15 14 13 42 42 H 1.07997 * 119.97112 * 180.27436 * 16 15 14 43 43 H 1.09001 * 109.47046 * 30.02216 * 18 17 16 44 44 H 1.08999 * 109.46753 * 150.02105 * 18 17 16 45 45 H 0.97001 * 120.00029 * 180.02562 * 22 21 19 46 46 H 1.07993 * 119.96517 * 179.97438 * 27 17 16 47 47 H 1.07998 * 120.02981 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2443 -1.1710 2.0289 6 7 3.3574 -0.8340 1.4434 7 6 3.8459 -1.5251 2.6392 8 1 3.1735 -1.3263 3.4739 9 6 3.8968 -3.0309 2.3730 10 8 4.8649 -3.3026 1.3576 11 6 5.2275 -1.0278 2.9778 12 8 5.7528 -0.1798 2.2878 13 7 5.8795 -1.5253 4.0473 14 6 7.1983 -1.1358 4.3061 15 6 8.0974 -2.0428 4.8514 16 6 9.3999 -1.6569 5.1009 17 6 9.8060 -0.3655 4.8184 18 6 11.2262 0.0541 5.0977 19 6 11.3228 0.5982 6.4997 20 1 10.4436 0.6367 7.1258 21 6 12.5333 1.0478 6.9829 22 7 13.6039 1.0014 6.2203 23 14 12.6530 1.7229 8.7205 24 1 12.2482 0.6721 9.6887 25 1 14.0524 2.1362 8.9956 26 1 11.7534 2.8963 8.8586 27 6 8.9116 0.5418 4.2807 28 6 7.6093 0.1602 4.0235 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 3.9878 -0.4660 0.8045 37 1 2.9168 -3.3747 2.0421 38 1 4.1747 -3.5526 3.2888 39 1 4.9507 -4.2401 1.1367 40 1 5.4345 -2.1533 4.6377 41 1 7.7798 -3.0504 5.0759 42 1 10.1008 -2.3630 5.5208 43 1 11.8863 -0.8073 4.9960 44 1 11.5235 0.8255 4.3873 45 1 14.4556 1.3173 6.5603 46 1 9.2317 1.5496 4.0617 47 1 6.9112 0.8694 3.6039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412636374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:22 Heat of formation + Delta-G solvation = -109.552228 kcal Electronic energy + Delta-G solvation = -28189.682512 eV Core-core repulsion = 24143.904148 eV Total energy + Delta-G solvation = -4045.778364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99278 -39.90415 -38.32416 -37.16555 -35.11729 -34.84102 -34.59983 -33.05624 -30.93908 -30.32308 -29.63510 -27.43668 -26.64786 -24.90510 -23.79873 -22.70410 -22.36700 -20.70546 -20.40841 -19.96966 -18.33325 -17.99037 -17.32412 -16.52310 -16.36704 -16.24902 -15.91413 -15.35770 -15.13473 -14.90805 -14.35162 -14.27766 -14.21799 -13.97231 -13.92958 -13.21289 -13.09616 -12.84045 -12.81352 -12.66252 -12.55922 -12.37774 -12.19868 -11.99218 -11.53532 -11.45467 -11.41201 -11.29119 -10.86235 -10.67230 -10.58291 -10.39078 -10.13702 -10.07200 -9.87671 -9.54210 -9.38577 -9.28983 -8.42126 -8.30700 -7.43483 -6.03617 -4.07800 1.80162 2.04288 2.25896 2.43572 2.65401 3.13365 3.31882 3.36085 3.39183 3.73272 4.20124 4.31260 4.39398 4.50401 4.52910 4.57140 4.62214 4.81219 4.90224 5.07938 5.09730 5.23943 5.30161 5.37635 5.40574 5.45773 5.55797 5.56977 5.78775 5.85081 5.88592 5.96289 6.02530 6.09756 6.18075 6.62729 6.73292 6.85738 7.14614 7.14889 7.18377 7.19116 7.39029 7.50774 7.68115 7.85200 7.85856 7.91887 8.02500 8.32249 8.97190 9.55810 11.05926 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002095 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.645257 B =13364.806019 C =13891.141915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.521 3.479 5 O -0.545 6.545 6 N -0.704 5.704 7 C 0.130 3.870 8 H 0.127 0.873 9 C 0.069 3.931 10 O -0.562 6.562 11 C 0.519 3.481 12 O -0.513 6.513 13 N -0.660 5.660 14 C 0.103 3.897 15 C -0.140 4.140 16 C -0.109 4.109 17 C -0.040 4.040 18 C 0.048 3.952 19 C -0.512 4.512 20 H 0.056 0.944 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.109 4.109 28 C -0.116 4.116 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.415 0.585 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.383 0.617 40 H 0.405 0.595 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.121 0.879 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.622 -7.783 -11.751 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 C -0.205 4.205 4 C 0.308 3.692 5 O -0.422 6.422 6 N -0.358 5.358 7 C 0.021 3.979 8 H 0.145 0.855 9 C -0.011 4.011 10 O -0.368 6.368 11 C 0.304 3.696 12 O -0.387 6.387 13 N -0.305 5.305 14 C 0.011 3.989 15 C -0.160 4.160 16 C -0.128 4.128 17 C -0.041 4.041 18 C 0.011 3.989 19 C -0.550 4.550 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.724 3.276 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.128 4.128 28 C -0.136 4.136 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.252 0.748 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.231 0.769 40 H 0.240 0.760 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.139 0.861 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.579 -6.809 -11.688 28.055 hybrid contribution 0.205 -0.491 1.053 1.180 sum -24.374 -7.301 -10.635 27.577 Atomic orbital electron populations 1.21617 0.92310 1.02787 1.02257 1.21294 0.98357 0.97500 0.96251 1.21823 1.01757 0.93842 1.03072 1.20798 0.81533 0.79010 0.87855 1.90691 1.55316 1.49138 1.47090 1.45683 1.07562 1.58151 1.24358 1.20866 0.94119 0.91667 0.91280 0.85531 1.22509 0.92968 0.93664 0.91931 1.86558 1.60886 1.31041 1.58324 1.20271 0.87010 0.82002 0.80307 1.90707 1.67296 1.30777 1.49968 1.43175 1.13109 1.46912 1.27304 1.17482 0.83276 0.93862 1.04325 1.20734 0.93511 0.97822 1.03923 1.20889 0.94646 0.96771 1.00463 1.20739 0.98890 0.92342 0.92105 1.18354 0.86178 0.97214 0.97172 1.21019 0.94668 1.41400 0.97891 0.92524 1.25019 0.95759 0.95858 0.97752 1.69950 0.99799 1.47112 1.36427 0.86591 0.76984 0.79480 0.84588 1.20197 1.21251 1.20176 1.21018 0.92474 0.99832 0.99489 1.21100 0.97065 0.94236 1.01162 0.91862 0.91917 0.92001 0.88307 0.91948 0.91669 0.91202 0.74768 0.91795 0.92114 0.76931 0.76019 0.86829 0.85969 0.95294 0.95278 0.92790 0.86069 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 8.48 37.16 0.32 -0.59 16 2 C -0.11 -0.80 3.26 -91.77 -0.30 -1.10 16 3 C -0.15 -0.95 9.09 37.16 0.34 -0.61 16 4 C 0.52 5.13 7.12 -10.99 -0.08 5.05 16 5 O -0.55 -6.84 15.65 5.55 0.09 -6.75 16 6 N -0.70 -6.86 4.79 -54.94 -0.26 -7.12 16 7 C 0.13 1.25 2.78 -69.09 -0.19 1.06 16 8 H 0.13 1.12 7.58 -51.93 -0.39 0.73 16 9 C 0.07 0.52 6.73 37.16 0.25 0.77 16 10 O -0.56 -4.93 13.09 -35.23 -0.46 -5.39 16 11 C 0.52 6.56 6.58 -10.99 -0.07 6.48 16 12 O -0.51 -8.25 13.27 5.55 0.07 -8.17 16 13 N -0.66 -7.97 5.22 -9.86 -0.05 -8.02 16 14 C 0.10 1.65 6.30 -83.70 -0.53 1.12 16 15 C -0.14 -2.23 9.97 -39.39 -0.39 -2.63 16 16 C -0.11 -2.08 9.69 -39.61 -0.38 -2.46 16 17 C -0.04 -0.88 5.07 -104.59 -0.53 -1.41 16 18 C 0.05 1.23 5.10 -29.03 -0.15 1.08 16 19 C -0.51 -14.28 9.09 -34.44 -0.31 -14.60 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 23 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C -0.11 -2.23 9.69 -39.61 -0.38 -2.61 16 28 C -0.12 -2.12 8.70 -39.39 -0.34 -2.46 16 29 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.44 7.57 -51.93 -0.39 0.05 16 35 H 0.07 0.35 8.14 -51.92 -0.42 -0.08 16 36 H 0.41 4.12 7.21 -40.82 -0.29 3.83 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.33 7.83 -51.93 -0.41 -0.08 16 39 H 0.38 1.70 9.12 45.56 0.42 2.12 16 40 H 0.40 3.40 8.49 -40.82 -0.35 3.05 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 42 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 47 H 0.13 2.30 6.23 -52.49 -0.33 1.97 16 LS Contribution 396.58 15.07 5.98 5.98 Total: -1.00 -35.05 396.58 -8.13 -43.18 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.35 Total: 6.82 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.86 Total: -11.36 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.42 Total: -40.80 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.30 Total: -20.31 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.05 -8.13 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412636374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.371 kcal (2) G-P(sol) polarization free energy of solvation -35.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds