Wall clock time and date at job start Tue Mar 31 2020 17:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47369 * 2 1 4 4 C 1.50694 * 109.47519 * 120.00226 * 2 1 3 5 5 O 1.21284 * 119.99580 * 359.97438 * 4 2 1 6 6 N 1.34770 * 120.00585 * 179.97438 * 4 2 1 7 7 C 1.46496 * 120.00566 * 180.02562 * 6 4 2 8 8 H 1.09007 * 109.47057 * 324.99763 * 7 6 4 9 9 C 1.52998 * 109.47495 * 84.99611 * 7 6 4 10 10 O 1.42904 * 109.46959 * 65.00328 * 9 7 6 11 11 C 1.50695 * 109.47339 * 205.00076 * 7 6 4 12 12 O 1.21289 * 120.00068 * 359.97438 * 11 7 6 13 13 N 1.34778 * 120.00041 * 179.97438 * 11 7 6 14 14 C 1.39925 * 119.99850 * 175.36854 * 13 11 7 15 15 C 1.38873 * 120.06818 * 214.80774 * 14 13 11 16 16 C 1.38116 * 119.93119 * 179.74680 * 15 14 13 17 17 C 1.38289 * 120.06548 * 0.53062 * 16 15 14 18 18 C 1.50703 * 119.92771 * 179.72396 * 17 16 15 19 19 C 1.50697 * 109.47129 * 270.02373 * 18 17 16 20 20 H 1.08004 * 119.99822 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00365 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99572 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00483 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47039 * 59.99742 * 23 21 19 25 25 H 1.48492 * 109.47197 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46864 * 300.00091 * 23 21 19 27 27 C 1.38281 * 120.14345 * 359.74187 * 17 16 15 28 28 C 1.38119 * 120.06729 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.46687 * 300.00084 * 1 2 3 30 30 H 1.08997 * 109.47215 * 59.99593 * 1 2 3 31 31 H 1.08993 * 109.47312 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46654 * 240.00434 * 2 1 3 33 33 H 1.09000 * 109.47284 * 60.00282 * 3 2 1 34 34 H 1.08999 * 109.47442 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.47048 * 300.00490 * 3 2 1 36 36 H 0.97002 * 119.99815 * 359.97438 * 6 4 2 37 37 H 1.09001 * 109.46919 * 305.00511 * 9 7 6 38 38 H 1.08994 * 109.47407 * 185.00489 * 9 7 6 39 39 H 0.96699 * 113.99951 * 180.02562 * 10 9 7 40 40 H 0.97002 * 120.00337 * 355.36065 * 13 11 7 41 41 H 1.08000 * 120.03675 * 0.02737 * 15 14 13 42 42 H 1.07997 * 119.97112 * 180.27436 * 16 15 14 43 43 H 1.09001 * 109.47046 * 30.02216 * 18 17 16 44 44 H 1.08999 * 109.46753 * 150.02105 * 18 17 16 45 45 H 0.97001 * 120.00029 * 180.02562 * 22 21 19 46 46 H 1.07993 * 119.96517 * 179.97438 * 27 17 16 47 47 H 1.07998 * 120.02981 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2443 -1.1710 2.0289 6 7 3.3574 -0.8340 1.4434 7 6 3.8459 -1.5251 2.6392 8 1 3.1735 -1.3263 3.4739 9 6 3.8968 -3.0309 2.3730 10 8 4.8649 -3.3026 1.3576 11 6 5.2275 -1.0278 2.9778 12 8 5.7528 -0.1798 2.2878 13 7 5.8795 -1.5253 4.0473 14 6 7.1983 -1.1358 4.3061 15 6 8.0974 -2.0428 4.8514 16 6 9.3999 -1.6569 5.1009 17 6 9.8060 -0.3655 4.8184 18 6 11.2262 0.0541 5.0977 19 6 11.3228 0.5982 6.4997 20 1 10.4436 0.6367 7.1258 21 6 12.5333 1.0478 6.9829 22 7 13.6039 1.0014 6.2203 23 14 12.6530 1.7229 8.7205 24 1 12.2482 0.6721 9.6887 25 1 14.0524 2.1362 8.9956 26 1 11.7534 2.8963 8.8586 27 6 8.9116 0.5418 4.2807 28 6 7.6093 0.1602 4.0235 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 3.9878 -0.4660 0.8045 37 1 2.9168 -3.3747 2.0421 38 1 4.1747 -3.5526 3.2888 39 1 4.9507 -4.2401 1.1367 40 1 5.4345 -2.1533 4.6377 41 1 7.7798 -3.0504 5.0759 42 1 10.1008 -2.3630 5.5208 43 1 11.8863 -0.8073 4.9960 44 1 11.5235 0.8255 4.3873 45 1 14.4556 1.3173 6.5603 46 1 9.2317 1.5496 4.0617 47 1 6.9112 0.8694 3.6039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412636374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:21 Heat of formation + Delta-G solvation = -135.678822 kcal Electronic energy + Delta-G solvation = -28190.815446 eV Core-core repulsion = 24143.904148 eV Total energy + Delta-G solvation = -4046.911298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95992 -40.86413 -39.62050 -37.88136 -36.40918 -35.51097 -35.37808 -35.00113 -32.45298 -31.78011 -30.68112 -28.36145 -27.93924 -25.76860 -25.15872 -24.00563 -23.67660 -22.05534 -21.27794 -21.00439 -19.24175 -18.75628 -18.49784 -18.17881 -17.45887 -17.22450 -16.81802 -16.69652 -16.25983 -15.94421 -15.85430 -15.44602 -14.99302 -14.92535 -14.72694 -14.53727 -14.46314 -14.26473 -13.87322 -13.67210 -13.53613 -13.27750 -13.21174 -13.17538 -12.95449 -12.78667 -12.60544 -12.47118 -12.07938 -12.06215 -12.00338 -11.68523 -11.55234 -11.24461 -11.10285 -10.90540 -10.72975 -10.59421 -10.25093 -9.76575 -8.91476 -8.18114 -6.32668 0.41592 0.56961 1.39538 1.42848 1.43138 1.48959 1.51265 1.74079 2.26005 2.40253 2.98542 3.11190 3.16986 3.39104 3.65515 3.89488 3.97672 4.04614 4.06795 4.15044 4.26922 4.34291 4.38354 4.50279 4.52268 4.60758 4.65084 4.71128 4.74914 4.86223 4.93862 5.07171 5.12126 5.17354 5.28882 5.31663 5.33291 5.36356 5.42045 5.45624 5.59427 5.75612 6.07784 6.11511 6.23979 6.34712 6.40077 6.79781 6.80821 7.01624 7.10064 7.35622 8.89819 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022473 B = 0.002095 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.645257 B =13364.806019 C =13891.141915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.519 3.481 5 O -0.575 6.575 6 N -0.704 5.704 7 C 0.131 3.869 8 H 0.138 0.862 9 C 0.073 3.927 10 O -0.585 6.585 11 C 0.519 3.481 12 O -0.549 6.549 13 N -0.647 5.647 14 C 0.119 3.881 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.074 4.074 18 C 0.057 3.943 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.270 1.270 27 C -0.122 4.122 28 C -0.123 4.123 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.414 0.586 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.401 0.599 40 H 0.427 0.573 41 H 0.161 0.839 42 H 0.127 0.873 43 H 0.007 0.993 44 H -0.002 1.002 45 H 0.265 0.735 46 H 0.109 0.891 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.000 -9.288 -11.237 30.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.131 4.131 3 C -0.202 4.202 4 C 0.307 3.693 5 O -0.454 6.454 6 N -0.357 5.357 7 C 0.022 3.978 8 H 0.155 0.845 9 C -0.006 4.006 10 O -0.394 6.394 11 C 0.307 3.693 12 O -0.426 6.426 13 N -0.293 5.293 14 C 0.026 3.974 15 C -0.143 4.143 16 C -0.133 4.133 17 C -0.074 4.074 18 C 0.020 3.980 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.195 1.195 27 C -0.141 4.141 28 C -0.143 4.143 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.251 0.749 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.266 0.734 41 H 0.178 0.822 42 H 0.145 0.855 43 H 0.025 0.975 44 H 0.017 0.983 45 H 0.074 0.926 46 H 0.127 0.873 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.987 -8.357 -11.170 30.380 hybrid contribution 0.859 -0.061 0.797 1.173 sum -26.129 -8.419 -10.373 29.346 Atomic orbital electron populations 1.21609 0.92077 1.02425 1.02624 1.21361 0.98476 0.97659 0.95609 1.21810 1.01411 0.93478 1.03499 1.21278 0.81161 0.78527 0.88286 1.90673 1.55889 1.50531 1.48301 1.45757 1.07613 1.58045 1.24296 1.20992 0.91954 0.93110 0.91718 0.84505 1.22528 0.93081 0.91958 0.93057 1.86512 1.61103 1.32997 1.58811 1.20834 0.87820 0.81059 0.79619 1.90703 1.68371 1.32377 1.51144 1.43068 1.11544 1.47079 1.27657 1.17548 0.85033 0.92807 1.02046 1.21039 0.91706 0.99624 1.01893 1.20988 0.96398 0.95507 1.00399 1.20427 0.97006 0.94400 0.95578 1.18092 0.88812 0.95276 0.95835 1.21349 0.94790 1.41501 0.98884 0.92617 1.25955 0.95317 0.96055 1.02253 1.70082 1.00383 1.48052 1.38514 0.85481 0.77211 0.79015 0.79241 1.18972 1.20638 1.19507 1.20929 0.93495 0.99309 1.00367 1.21111 0.96012 0.95640 1.01504 0.93257 0.89769 0.92717 0.86428 0.92995 0.92157 0.89318 0.74890 0.91570 0.89186 0.74845 0.73369 0.82177 0.85542 0.97458 0.98319 0.92595 0.87314 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.48 71.98 0.61 -0.98 16 2 C -0.11 -1.39 3.26 -11.54 -0.04 -1.42 16 3 C -0.14 -1.66 9.09 71.98 0.65 -1.01 16 4 C 0.52 9.56 7.12 87.66 0.62 10.18 16 5 O -0.57 -13.77 15.65 -3.04 -0.05 -13.81 16 6 N -0.70 -12.71 4.79 -446.12 -2.14 -14.85 16 7 C 0.13 2.23 2.78 44.24 0.12 2.35 16 8 H 0.14 2.07 7.58 -2.38 -0.02 2.06 16 9 C 0.07 0.88 6.73 71.98 0.48 1.36 16 10 O -0.59 -8.63 13.09 -148.98 -1.95 -10.58 16 11 C 0.52 12.01 6.58 87.66 0.58 12.59 16 12 O -0.55 -17.12 13.27 -3.06 -0.04 -17.16 16 13 N -0.65 -13.51 5.22 -303.51 -1.59 -15.09 16 14 C 0.12 3.55 6.30 38.15 0.24 3.79 16 15 C -0.12 -3.55 9.97 22.39 0.22 -3.33 16 16 C -0.11 -4.28 9.69 22.25 0.22 -4.06 16 17 C -0.07 -3.32 5.07 -19.84 -0.10 -3.42 16 18 C 0.06 3.10 5.10 29.10 0.15 3.25 16 19 C -0.53 -30.37 9.09 25.60 0.23 -30.14 16 20 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 21 C 0.00 0.13 5.46 84.65 0.46 0.59 16 22 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 23 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 C -0.12 -5.16 9.69 22.25 0.22 -4.94 16 28 C -0.12 -4.46 8.70 22.39 0.19 -4.26 16 29 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.75 8.10 -2.39 -0.02 0.73 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.76 7.57 -2.39 -0.02 0.74 16 35 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.41 7.79 7.21 -92.71 -0.67 7.12 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.09 0.56 7.83 -2.39 -0.02 0.54 16 39 H 0.40 2.41 9.12 -74.06 -0.68 1.73 16 40 H 0.43 5.23 8.49 -92.71 -0.79 4.44 16 41 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 43 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 44 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 45 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 47 H 0.13 4.61 6.23 -2.91 -0.02 4.59 16 Total: -1.00 -78.64 396.58 0.30 -78.34 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -1.12 Total: 22.38 kcal Atomic # 6 Polarization: -24.31 SS G_CDS: 4.87 Total: -19.45 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -3.44 Total: -86.24 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -2.04 Total: -41.56 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -78.64 0.30 -78.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412636374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.336 kcal (2) G-P(sol) polarization free energy of solvation -78.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds