Wall clock time and date at job start Tue Mar 31 2020 17:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.09008 * 110.77808 * 303.21378 * 3 2 1 5 5 C 1.55157 * 110.71938 * 66.45060 * 3 2 1 6 6 C 1.54916 * 101.57795 * 153.87025 * 5 3 2 7 7 N 1.47422 * 104.83284 * 322.99155 * 6 5 3 8 8 S 1.65596 * 125.64891 * 204.09921 * 7 6 5 9 9 O 1.42101 * 106.40045 * 336.47895 * 8 7 6 10 10 O 1.42106 * 106.40310 * 203.56169 * 8 7 6 11 11 N 1.65597 * 107.22389 * 90.02001 * 8 7 6 12 12 C 1.46506 * 119.99791 * 89.99756 * 11 8 7 13 13 C 1.50695 * 109.46747 * 95.00454 * 12 11 8 14 14 H 1.07999 * 120.00684 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99744 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47160 * 89.99643 * 17 15 13 19 19 H 1.48495 * 109.46933 * 210.00161 * 17 15 13 20 20 H 1.48497 * 109.47066 * 329.99916 * 17 15 13 21 21 C 1.46498 * 119.99910 * 270.27980 * 11 8 7 22 22 C 1.53008 * 109.46912 * 264.71837 * 21 11 8 23 23 O 1.42899 * 109.46944 * 65.00248 * 22 21 11 24 24 C 1.42895 * 113.99974 * 179.97438 * 23 22 21 25 25 C 1.47022 * 108.70494 * 24.35513 * 7 6 5 26 26 H 1.08997 * 109.88796 * 239.30091 * 25 7 6 27 27 C 1.52998 * 109.88294 * 118.12897 * 25 7 6 28 28 H 1.09004 * 109.46772 * 300.00345 * 1 2 3 29 29 H 1.08999 * 109.46683 * 60.00085 * 1 2 3 30 30 H 1.08994 * 109.46871 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47254 * 239.99869 * 2 1 3 32 32 H 1.09000 * 109.47170 * 119.99710 * 2 1 3 33 33 H 1.08991 * 111.00303 * 35.79664 * 5 3 2 34 34 H 1.09002 * 111.03960 * 271.95343 * 5 3 2 35 35 H 1.09000 * 110.36372 * 204.15529 * 6 5 3 36 36 H 1.08995 * 110.45954 * 81.87763 * 6 5 3 37 37 H 1.08999 * 109.47194 * 215.00137 * 12 11 8 38 38 H 1.08998 * 109.47440 * 335.00346 * 12 11 8 39 39 H 0.97008 * 120.00034 * 180.02562 * 16 15 13 40 40 H 1.08990 * 109.47572 * 24.71903 * 21 11 8 41 41 H 1.09003 * 109.47280 * 144.72260 * 21 11 8 42 42 H 1.09002 * 109.46849 * 185.00054 * 22 21 11 43 43 H 1.09003 * 109.47136 * 305.00448 * 22 21 11 44 44 H 1.09003 * 109.47348 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47190 * 299.99843 * 24 23 22 46 46 H 1.09005 * 109.47093 * 60.00549 * 24 23 22 47 47 H 1.09008 * 109.46686 * 61.45674 * 27 25 7 48 48 H 1.08997 * 109.47517 * 181.45590 * 27 25 7 49 49 H 1.09001 * 109.47267 * 301.46329 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6427 1.9932 -0.8527 5 6 1.6764 2.1533 1.3304 6 6 2.7877 3.2288 1.4221 7 7 3.9953 2.5698 0.8924 8 16 5.5577 2.9919 1.2433 9 8 5.5241 4.3534 1.6488 10 8 6.3526 2.5220 0.1631 11 7 6.0144 2.1188 2.5743 12 6 6.6369 0.8029 2.4089 13 6 8.1364 0.9497 2.4366 14 1 8.5813 1.9253 2.5650 15 6 8.9405 -0.1619 2.2990 16 7 10.2492 -0.0338 2.3227 17 14 8.1711 -1.8497 2.0776 18 1 7.9759 -2.1187 0.6303 19 1 9.0677 -2.8822 2.6566 20 1 6.8580 -1.8897 2.7700 21 6 5.7903 2.6596 3.9172 22 6 7.0600 3.3619 4.4026 23 8 7.3213 4.4981 3.5763 24 6 8.4919 5.2292 3.9467 25 6 3.5830 1.4796 -0.0037 26 1 3.9756 0.5307 0.3616 27 6 4.0963 1.7479 -1.4198 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7319 1.4615 2.1707 34 1 0.6905 2.6144 1.2709 35 1 2.9421 3.5271 2.4590 36 1 2.5304 4.0953 0.8131 37 1 6.3210 0.1470 3.2200 38 1 6.3313 0.3738 1.4547 39 1 10.8149 -0.8158 2.2255 40 1 4.9680 3.3744 3.8886 41 1 5.5414 1.8466 4.5994 42 1 6.9239 3.6865 5.4342 43 1 7.9013 2.6710 4.3470 44 1 8.6202 6.0757 3.2721 45 1 8.3851 5.5926 4.9687 46 1 9.3631 4.5773 3.8819 47 1 5.1857 1.7843 -1.4105 48 1 3.7651 0.9493 -2.0837 49 1 3.7039 2.7011 -1.7741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413320946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:54 Heat of formation + Delta-G solvation = -121.773964 kcal Electronic energy + Delta-G solvation = -29919.655477 eV Core-core repulsion = 26008.791090 eV Total energy + Delta-G solvation = -3910.864387 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.12709 -37.52496 -36.45640 -35.38061 -34.97603 -33.96329 -32.42423 -31.23915 -29.57535 -29.32762 -27.14040 -25.76853 -25.56582 -22.87207 -22.33589 -21.82851 -21.44066 -20.21484 -18.29425 -17.13949 -17.02817 -16.55769 -16.09583 -15.91633 -15.06643 -14.90558 -14.64430 -14.44954 -14.27645 -14.13273 -13.64997 -13.49039 -13.30271 -12.95801 -12.63968 -12.49196 -12.40723 -12.32283 -12.22353 -11.99585 -11.85360 -11.59808 -11.38183 -11.33291 -11.18727 -11.13394 -11.07432 -10.92794 -10.71567 -10.69494 -10.60572 -10.49541 -10.41703 -10.21266 -10.13084 -9.48096 -8.92944 -8.79888 -8.56410 -8.07418 -6.06332 -4.04411 1.23949 3.26846 3.31854 3.34371 3.56972 4.16382 4.37472 4.39165 4.43153 4.59837 4.69806 5.02466 5.08161 5.22286 5.23066 5.24734 5.28303 5.42904 5.45240 5.51980 5.62856 5.64363 5.66488 5.68713 5.72603 5.78810 5.83492 5.87045 5.90029 5.94875 6.01140 6.05903 6.09968 6.14966 6.19070 6.25252 6.30337 6.47650 6.60393 6.64899 6.68307 6.78467 7.12110 7.47135 7.60855 7.83528 8.52331 9.01055 9.53420 11.06926 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.005650 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.158010 B = 4954.611127 C = 6565.605182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.093 4.093 4 H 0.083 0.917 5 C -0.126 4.126 6 C 0.124 3.876 7 N -1.022 6.022 8 S 2.790 3.210 9 O -0.965 6.965 10 O -0.960 6.960 11 N -0.983 5.983 12 C 0.227 3.773 13 C -0.525 4.525 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.868 3.132 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.143 3.857 22 C 0.033 3.967 23 O -0.370 6.370 24 C 0.033 3.967 25 C 0.153 3.847 26 H 0.073 0.927 27 C -0.184 4.184 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.030 0.970 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.030 0.970 46 H 0.042 0.958 47 H 0.091 0.909 48 H 0.062 0.938 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 2.936 0.285 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.113 4.113 4 H 0.101 0.899 5 C -0.164 4.164 6 C -0.002 4.002 7 N -0.861 5.861 8 S 2.800 3.200 9 O -0.948 6.948 10 O -0.943 6.943 11 N -0.823 5.823 12 C 0.104 3.896 13 C -0.564 4.564 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.695 3.305 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C 0.016 3.984 22 C -0.046 4.046 23 O -0.288 6.288 24 C -0.064 4.064 25 C 0.046 3.954 26 H 0.091 0.909 27 C -0.243 4.243 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.110 0.890 48 H 0.081 0.919 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.946 3.531 -0.332 18.293 hybrid contribution -0.118 -1.314 0.360 1.368 sum -18.064 2.217 0.028 18.200 Atomic orbital electron populations 1.21755 0.95708 1.01458 1.01781 1.21537 0.95856 0.95523 1.02527 1.22355 0.94026 0.96558 0.98333 0.89858 1.22867 0.98074 0.97781 0.97710 1.21846 0.84496 0.95133 0.98679 1.59645 1.23010 1.44888 1.58523 1.01869 0.71495 0.73292 0.73346 1.93595 1.86063 1.32108 1.83076 1.93573 1.66012 1.81930 1.52834 1.57609 1.73459 1.32734 1.18543 1.19425 0.94567 0.79127 0.96502 1.21429 0.88756 0.96274 1.49974 0.89993 1.24866 0.94696 0.98730 0.94629 1.69892 1.03181 1.30112 1.50265 0.86978 0.79614 0.84748 0.79132 1.19853 1.21093 1.19025 1.21044 0.95902 0.96651 0.84816 1.23172 1.00154 0.88815 0.92430 1.88060 1.44020 1.41072 1.55665 1.22654 0.88630 0.96177 0.98915 1.21289 0.94197 0.89833 0.90034 0.90927 1.22516 1.04862 1.01485 0.95423 0.92602 0.92853 0.92895 0.91640 0.91556 0.90603 0.90443 0.91144 0.91819 0.95202 0.95539 0.92633 0.91179 0.89717 0.94055 0.90157 0.90392 0.95097 0.93920 0.89012 0.91855 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.76 37.16 0.36 -0.74 16 2 C -0.12 -1.05 5.30 -26.73 -0.14 -1.19 16 3 C -0.09 -0.95 2.51 -88.78 -0.22 -1.18 16 4 H 0.08 0.80 7.84 -51.92 -0.41 0.39 16 5 C -0.13 -1.19 5.69 -24.58 -0.14 -1.33 16 6 C 0.12 1.52 6.98 -2.53 -0.02 1.50 16 7 N -1.02 -16.10 3.46 -104.42 -0.36 -16.46 16 8 S 2.79 57.71 6.18 -107.50 -0.66 57.04 16 9 O -0.96 -21.26 14.90 -65.24 -0.97 -22.23 16 10 O -0.96 -23.29 14.27 -57.17 -0.82 -24.11 16 11 N -0.98 -20.23 2.80 -115.66 -0.32 -20.55 16 12 C 0.23 5.29 4.19 -5.19 -0.02 5.27 16 13 C -0.53 -14.67 8.94 -34.44 -0.31 -14.98 16 14 H 0.08 2.53 7.04 -52.49 -0.37 2.16 16 15 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 17 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 21 C 0.14 2.47 5.84 -4.04 -0.02 2.45 16 22 C 0.03 0.61 6.03 37.16 0.22 0.83 16 23 O -0.37 -7.68 8.79 -54.29 -0.48 -8.16 16 24 C 0.03 0.57 11.01 101.05 1.11 1.69 16 25 C 0.15 2.14 3.27 -66.95 -0.22 1.93 16 26 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 27 C -0.18 -2.66 9.05 37.16 0.34 -2.32 16 28 H 0.05 0.39 7.49 -51.93 -0.39 0.00 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 34 H 0.08 0.58 8.13 -51.93 -0.42 0.15 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.66 7.06 -51.93 -0.37 0.29 16 38 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.07 1.08 7.61 -51.93 -0.40 0.68 16 41 H 0.08 1.24 8.00 -51.93 -0.42 0.83 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 1.71 6.27 -51.93 -0.33 1.39 16 44 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 1.65 5.79 -51.92 -0.30 1.34 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -34.78 390.70 -9.59 -44.37 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -8.82 Total: 0.54 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 0.84 Total: -6.09 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: 0.09 Total: -63.48 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -2.26 Total: -54.50 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Atomic # 16 Polarization: 57.71 SS G_CDS: -0.66 Total: 57.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.78 -9.59 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413320946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.399 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds