Wall clock time and date at job start Tue Mar 31 2020 17:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 H 1.09008 * 110.77808 * 303.21378 * 3 2 1 5 5 C 1.55157 * 110.71938 * 66.45060 * 3 2 1 6 6 C 1.54916 * 101.57795 * 153.87025 * 5 3 2 7 7 N 1.47422 * 104.83284 * 322.99155 * 6 5 3 8 8 S 1.65596 * 125.64891 * 204.09921 * 7 6 5 9 9 O 1.42101 * 106.40045 * 336.47895 * 8 7 6 10 10 O 1.42106 * 106.40310 * 203.56169 * 8 7 6 11 11 N 1.65597 * 107.22389 * 90.02001 * 8 7 6 12 12 C 1.46506 * 119.99791 * 89.99756 * 11 8 7 13 13 C 1.50695 * 109.46747 * 95.00454 * 12 11 8 14 14 H 1.07999 * 120.00684 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31508 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99744 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47160 * 89.99643 * 17 15 13 19 19 H 1.48495 * 109.46933 * 210.00161 * 17 15 13 20 20 H 1.48497 * 109.47066 * 329.99916 * 17 15 13 21 21 C 1.46498 * 119.99910 * 270.27980 * 11 8 7 22 22 C 1.53008 * 109.46912 * 264.71837 * 21 11 8 23 23 O 1.42899 * 109.46944 * 65.00248 * 22 21 11 24 24 C 1.42895 * 113.99974 * 179.97438 * 23 22 21 25 25 C 1.47022 * 108.70494 * 24.35513 * 7 6 5 26 26 H 1.08997 * 109.88796 * 239.30091 * 25 7 6 27 27 C 1.52998 * 109.88294 * 118.12897 * 25 7 6 28 28 H 1.09004 * 109.46772 * 300.00345 * 1 2 3 29 29 H 1.08999 * 109.46683 * 60.00085 * 1 2 3 30 30 H 1.08994 * 109.46871 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47254 * 239.99869 * 2 1 3 32 32 H 1.09000 * 109.47170 * 119.99710 * 2 1 3 33 33 H 1.08991 * 111.00303 * 35.79664 * 5 3 2 34 34 H 1.09002 * 111.03960 * 271.95343 * 5 3 2 35 35 H 1.09000 * 110.36372 * 204.15529 * 6 5 3 36 36 H 1.08995 * 110.45954 * 81.87763 * 6 5 3 37 37 H 1.08999 * 109.47194 * 215.00137 * 12 11 8 38 38 H 1.08998 * 109.47440 * 335.00346 * 12 11 8 39 39 H 0.97008 * 120.00034 * 180.02562 * 16 15 13 40 40 H 1.08990 * 109.47572 * 24.71903 * 21 11 8 41 41 H 1.09003 * 109.47280 * 144.72260 * 21 11 8 42 42 H 1.09002 * 109.46849 * 185.00054 * 22 21 11 43 43 H 1.09003 * 109.47136 * 305.00448 * 22 21 11 44 44 H 1.09003 * 109.47348 * 180.02562 * 24 23 22 45 45 H 1.08998 * 109.47190 * 299.99843 * 24 23 22 46 46 H 1.09005 * 109.47093 * 60.00549 * 24 23 22 47 47 H 1.09008 * 109.46686 * 61.45674 * 27 25 7 48 48 H 1.08997 * 109.47517 * 181.45590 * 27 25 7 49 49 H 1.09001 * 109.47267 * 301.46329 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6427 1.9932 -0.8527 5 6 1.6764 2.1533 1.3304 6 6 2.7877 3.2288 1.4221 7 7 3.9953 2.5698 0.8924 8 16 5.5577 2.9919 1.2433 9 8 5.5241 4.3534 1.6488 10 8 6.3526 2.5220 0.1631 11 7 6.0144 2.1188 2.5743 12 6 6.6369 0.8029 2.4089 13 6 8.1364 0.9497 2.4366 14 1 8.5813 1.9253 2.5650 15 6 8.9405 -0.1619 2.2990 16 7 10.2492 -0.0338 2.3227 17 14 8.1711 -1.8497 2.0776 18 1 7.9759 -2.1187 0.6303 19 1 9.0677 -2.8822 2.6566 20 1 6.8580 -1.8897 2.7700 21 6 5.7903 2.6596 3.9172 22 6 7.0600 3.3619 4.4026 23 8 7.3213 4.4981 3.5763 24 6 8.4919 5.2292 3.9467 25 6 3.5830 1.4796 -0.0037 26 1 3.9756 0.5307 0.3616 27 6 4.0963 1.7479 -1.4198 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7319 1.4615 2.1707 34 1 0.6905 2.6144 1.2709 35 1 2.9421 3.5271 2.4590 36 1 2.5304 4.0953 0.8131 37 1 6.3210 0.1470 3.2200 38 1 6.3313 0.3738 1.4547 39 1 10.8149 -0.8158 2.2255 40 1 4.9680 3.3744 3.8886 41 1 5.5414 1.8466 4.5994 42 1 6.9239 3.6865 5.4342 43 1 7.9013 2.6710 4.3470 44 1 8.6202 6.0757 3.2721 45 1 8.3851 5.5926 4.9687 46 1 9.3631 4.5773 3.8819 47 1 5.1857 1.7843 -1.4105 48 1 3.7651 0.9493 -2.0837 49 1 3.7039 2.7011 -1.7741 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413320946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:53 Heat of formation + Delta-G solvation = -146.651547 kcal Electronic energy + Delta-G solvation = -29920.734250 eV Core-core repulsion = 26008.791090 eV Total energy + Delta-G solvation = -3911.943160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.09409 -39.04764 -38.16959 -37.03159 -36.69438 -34.79259 -34.52249 -32.26321 -31.24368 -30.23655 -28.96239 -27.06725 -26.66231 -24.22700 -23.61969 -23.22155 -22.73004 -21.04816 -19.76946 -19.09732 -18.51335 -18.18777 -17.58940 -17.14414 -16.63319 -16.38743 -16.07627 -15.84256 -15.39179 -15.21432 -15.08465 -14.70677 -14.51023 -14.46027 -14.14565 -13.97931 -13.68363 -13.56647 -13.48886 -13.24573 -12.97986 -12.89934 -12.88861 -12.83555 -12.66333 -12.51873 -12.38285 -12.28942 -12.20546 -12.08059 -11.90101 -11.80606 -11.52529 -11.44152 -11.37656 -11.18014 -10.76426 -10.45461 -10.01306 -9.73885 -8.25088 -6.28791 -0.32416 1.35408 1.39558 1.47123 2.11373 2.36472 2.68999 3.01862 3.08299 3.31848 3.61821 3.81210 3.88051 4.02541 4.24012 4.27130 4.29196 4.33549 4.41704 4.49779 4.52244 4.54348 4.58243 4.61074 4.66196 4.71551 4.76878 4.79329 4.80060 4.88034 4.91694 4.99535 5.05014 5.10056 5.16072 5.25146 5.29630 5.32806 5.39337 5.45256 5.49503 5.53211 5.56280 5.62499 5.88474 6.35249 6.39569 6.75125 7.32918 8.92002 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.005650 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.158010 B = 4954.611127 C = 6565.605182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.083 4.083 4 H 0.095 0.905 5 C -0.114 4.114 6 C 0.111 3.889 7 N -1.018 6.018 8 S 2.798 3.202 9 O -0.986 6.986 10 O -1.008 7.008 11 N -0.989 5.989 12 C 0.236 3.764 13 C -0.528 4.528 14 H 0.033 0.967 15 C 0.008 3.992 16 N -0.950 5.950 17 Si 0.936 3.064 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.227 1.227 21 C 0.133 3.867 22 C 0.029 3.971 23 O -0.400 6.400 24 C 0.029 3.971 25 C 0.142 3.858 26 H 0.064 0.936 27 C -0.186 4.186 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.265 0.735 40 H 0.093 0.907 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.021 0.979 47 H 0.050 0.950 48 H 0.087 0.913 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.983 1.835 1.200 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.103 4.103 4 H 0.113 0.887 5 C -0.152 4.152 6 C -0.014 4.014 7 N -0.859 5.859 8 S 2.809 3.191 9 O -0.969 6.969 10 O -0.992 6.992 11 N -0.828 5.828 12 C 0.111 3.889 13 C -0.567 4.567 14 H 0.052 0.948 15 C -0.189 4.189 16 N -0.590 5.590 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.149 1.149 21 C 0.008 3.992 22 C -0.049 4.049 23 O -0.320 6.320 24 C -0.068 4.068 25 C 0.037 3.963 26 H 0.082 0.918 27 C -0.244 4.244 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.126 0.874 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.106 0.894 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.311 2.462 0.610 22.454 hybrid contribution 1.257 -0.828 0.060 1.507 sum -21.054 1.634 0.670 21.128 Atomic orbital electron populations 1.21725 0.94123 1.02011 1.02466 1.21533 0.97122 0.94350 1.02321 1.22337 0.90623 0.97866 0.99442 0.88667 1.22881 0.98254 0.96810 0.97277 1.22227 0.83786 0.96251 0.99103 1.59214 1.22250 1.45694 1.58783 1.01246 0.72272 0.72811 0.72733 1.93553 1.86820 1.33314 1.83246 1.93518 1.68509 1.82482 1.54714 1.57528 1.73656 1.31648 1.19987 1.19203 0.91469 0.80990 0.97205 1.21683 0.91637 0.94322 1.49050 0.94838 1.25862 0.95054 1.03683 0.94337 1.70072 1.05152 1.31521 1.52287 0.85895 0.80378 0.78604 0.79280 1.19940 1.20645 1.14948 1.21427 0.95867 0.98104 0.83806 1.23263 0.99423 0.87831 0.94391 1.88013 1.44968 1.41776 1.57201 1.22796 0.87043 0.95750 1.01209 1.21562 0.97132 0.88685 0.88961 0.91828 1.22505 1.02181 1.02938 0.96792 0.91787 0.92287 0.92496 0.91805 0.91989 0.89956 0.87385 0.90433 0.91151 0.92543 0.95681 0.92616 0.88840 0.86453 0.90219 0.94073 0.89539 0.91674 0.95994 0.93121 0.89427 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.76 71.98 0.70 -0.86 16 2 C -0.12 -1.68 5.30 30.60 0.16 -1.52 16 3 C -0.08 -1.42 2.51 -9.60 -0.02 -1.44 16 4 H 0.10 1.44 7.84 -2.38 -0.02 1.42 16 5 C -0.11 -1.67 5.69 31.99 0.18 -1.49 16 6 C 0.11 2.40 6.98 86.86 0.61 3.01 16 7 N -1.02 -30.77 3.46 -484.26 -1.67 -32.45 16 8 S 2.80 117.28 6.18 -56.49 -0.35 116.93 16 9 O -0.99 -43.93 14.90 -120.29 -1.79 -45.72 16 10 O -1.01 -51.31 14.27 -128.00 -1.83 -53.13 16 11 N -0.99 -40.42 2.80 -519.84 -1.46 -41.87 16 12 C 0.24 10.90 4.19 85.63 0.36 11.26 16 13 C -0.53 -30.56 8.94 25.60 0.23 -30.33 16 14 H 0.03 2.21 7.04 -2.91 -0.02 2.19 16 15 C 0.01 0.46 5.47 84.66 0.46 0.93 16 16 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 17 Si 0.94 42.92 27.47 68.60 1.88 44.80 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.23 -8.92 6.54 99.48 0.65 -8.27 16 21 C 0.13 4.41 5.84 86.38 0.50 4.91 16 22 C 0.03 1.08 6.03 71.98 0.43 1.51 16 23 O -0.40 -16.97 8.79 -130.76 -1.15 -18.12 16 24 C 0.03 1.01 11.01 113.37 1.25 2.26 16 25 C 0.14 3.77 3.27 45.34 0.15 3.92 16 26 H 0.06 1.79 7.82 -2.39 -0.02 1.77 16 27 C -0.19 -5.27 9.05 71.98 0.65 -4.62 16 28 H 0.06 0.59 7.49 -2.38 -0.02 0.57 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 33 H 0.08 1.16 8.02 -2.39 -0.02 1.14 16 34 H 0.11 1.01 8.13 -2.39 -0.02 1.00 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 2.32 7.06 -2.39 -0.02 2.30 16 38 H 0.03 1.18 7.04 -2.39 -0.02 1.16 16 39 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 40 H 0.09 2.65 7.61 -2.39 -0.02 2.64 16 41 H 0.12 3.07 8.00 -2.39 -0.02 3.05 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.04 1.84 6.27 -2.39 -0.01 1.83 16 44 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.05 1.88 5.79 -2.38 -0.01 1.87 16 48 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -81.39 390.70 0.45 -80.94 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.85 Total: 21.14 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.67 Total: -12.46 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -2.83 Total: -134.38 kcal Atomic # 8 Polarization: -112.20 SS G_CDS: -4.77 Total: -116.97 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.88 Total: 44.80 kcal Atomic # 16 Polarization: 117.28 SS G_CDS: -0.35 Total: 116.93 kcal Total: -81.39 0.45 -80.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413320946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.711 kcal (2) G-P(sol) polarization free energy of solvation -81.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds