Wall clock time and date at job start Tue Mar 31 2020 17:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47123 * 2 1 4 4 H 1.08989 * 110.63964 * 56.68475 * 3 2 1 5 5 C 1.55163 * 110.71725 * 293.54435 * 3 2 1 6 6 C 1.54906 * 101.58153 * 206.13550 * 5 3 2 7 7 N 1.47431 * 104.83121 * 37.01023 * 6 5 3 8 8 S 1.65601 * 125.64888 * 155.83693 * 7 6 5 9 9 O 1.42100 * 106.39915 * 330.98368 * 8 7 6 10 10 O 1.42091 * 106.40228 * 198.06156 * 8 7 6 11 11 N 1.65596 * 107.21744 * 84.51989 * 8 7 6 12 12 C 1.46504 * 120.00079 * 93.31691 * 11 8 7 13 13 C 1.50695 * 109.47408 * 246.21513 * 12 11 8 14 14 H 1.08002 * 120.00333 * 3.12243 * 13 12 11 15 15 C 1.37876 * 120.00289 * 183.11793 * 13 12 11 16 16 N 1.31515 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00218 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47099 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47389 * 120.00180 * 17 15 13 20 20 H 1.48507 * 109.47044 * 239.99812 * 17 15 13 21 21 C 1.46504 * 120.00295 * 273.04264 * 11 8 7 22 22 C 1.53003 * 109.46973 * 265.27286 * 21 11 8 23 23 O 1.42903 * 109.46737 * 64.99976 * 22 21 11 24 24 C 1.42898 * 113.99909 * 179.97438 * 23 22 21 25 25 C 1.47017 * 108.70442 * 336.09776 * 7 6 5 26 26 H 1.09000 * 109.88364 * 120.25092 * 25 7 6 27 27 C 1.52998 * 109.88682 * 241.41885 * 25 7 6 28 28 H 1.08995 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47443 * 300.00543 * 1 2 3 30 30 H 1.09002 * 109.46943 * 60.00196 * 1 2 3 31 31 H 1.09002 * 109.47429 * 240.00244 * 2 1 3 32 32 H 1.08999 * 109.47199 * 119.99332 * 2 1 3 33 33 H 1.08996 * 111.00480 * 88.05954 * 5 3 2 34 34 H 1.09000 * 111.00463 * 324.21081 * 5 3 2 35 35 H 1.09000 * 110.36742 * 278.17314 * 6 5 3 36 36 H 1.08998 * 110.37049 * 155.84858 * 6 5 3 37 37 H 1.09002 * 109.46647 * 6.21804 * 12 11 8 38 38 H 1.09001 * 109.47301 * 126.21040 * 12 11 8 39 39 H 0.97001 * 120.00367 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47209 * 25.27400 * 21 11 8 41 41 H 1.09005 * 109.47168 * 145.28062 * 21 11 8 42 42 H 1.08996 * 109.47108 * 184.99805 * 22 21 11 43 43 H 1.08997 * 109.47362 * 305.00308 * 22 21 11 44 44 H 1.08996 * 109.47534 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47599 * 300.00337 * 24 23 22 46 46 H 1.09005 * 109.47213 * 60.00448 * 24 23 22 47 47 H 1.09002 * 109.47452 * 54.25153 * 27 25 7 48 48 H 1.08994 * 109.47348 * 174.25819 * 27 25 7 49 49 H 1.08998 * 109.46641 * 294.25475 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6399 1.9915 0.8523 5 6 1.6764 2.1533 -1.3305 6 6 2.7875 3.2287 -1.4223 7 7 3.9953 2.5697 -0.8926 8 16 5.5577 2.9908 -1.2448 9 8 5.5380 3.5484 -2.5517 10 8 6.3638 1.8767 -0.8871 11 7 5.9772 4.2204 -0.2180 12 6 6.6480 3.9198 1.0493 13 6 5.7389 4.2788 2.1963 14 1 4.7408 4.6422 2.0011 15 6 6.1813 4.1431 3.4951 16 7 7.3965 3.6999 3.7330 17 14 5.0542 4.5873 4.9170 18 1 3.7493 5.0570 4.3861 19 1 4.8403 3.3917 5.7713 20 1 5.6774 5.6671 5.7239 21 6 5.6830 5.6093 -0.5796 22 6 6.9093 6.2325 -1.2497 23 8 7.1660 5.5658 -2.4873 24 6 8.2969 6.0743 -3.1977 25 6 3.5829 1.4727 -0.0049 26 1 3.9728 0.5263 -0.3794 27 6 4.1000 1.7277 1.4123 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.6905 2.6143 -1.2704 34 1 1.7318 1.4614 -2.1709 35 1 2.5292 4.0942 -0.8122 36 1 2.9420 3.5270 -2.4593 37 1 6.8844 2.8566 1.0919 38 1 7.5682 4.4997 1.1198 39 1 7.7079 3.6048 4.6467 40 1 4.8398 5.6343 -1.2698 41 1 5.4340 6.1738 0.3190 42 1 6.7222 7.2896 -1.4384 43 1 7.7739 6.1278 -0.5944 44 1 8.4243 5.5163 -4.1253 45 1 8.1383 7.1280 -3.4268 46 1 9.1906 5.9666 -2.5830 47 1 3.7731 2.7122 1.7467 48 1 3.7062 0.9660 2.0852 49 1 5.1892 1.6864 1.4144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413320948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:57 Heat of formation + Delta-G solvation = -129.596698 kcal Electronic energy + Delta-G solvation = -30051.358751 eV Core-core repulsion = 26140.155144 eV Total energy + Delta-G solvation = -3911.203606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.89825 -37.65343 -36.44877 -35.36491 -34.98663 -33.78898 -32.56130 -30.93932 -29.36121 -29.14386 -26.70087 -25.75569 -25.37612 -23.06610 -22.63436 -21.73076 -21.16682 -19.97715 -18.01171 -17.15367 -16.62646 -16.40882 -16.20455 -15.79827 -15.36661 -14.92820 -14.54310 -14.43518 -14.34651 -14.13116 -13.45374 -13.28502 -13.16786 -12.75177 -12.59403 -12.43657 -12.24314 -12.12841 -11.86468 -11.77738 -11.56398 -11.37672 -11.32727 -11.20798 -11.14007 -11.11296 -11.08288 -10.94205 -10.75870 -10.55616 -10.52437 -10.44778 -10.39125 -9.99238 -9.95517 -9.66006 -9.21821 -8.58005 -8.47709 -7.95318 -6.09953 -4.14454 1.38447 3.22682 3.31842 3.32965 3.62987 4.25992 4.27911 4.36579 4.57353 4.78831 4.85579 5.14966 5.23857 5.24304 5.37584 5.42290 5.47551 5.52019 5.57037 5.59497 5.64785 5.70041 5.75652 5.77444 5.82005 5.88750 5.93058 5.96819 6.00519 6.02156 6.07067 6.17784 6.20554 6.28727 6.37009 6.48788 6.54590 6.62653 6.85321 6.95445 7.18940 7.42131 7.49434 7.59255 7.71710 7.88013 8.19170 8.89300 9.49668 10.98265 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008349 B = 0.006770 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.990826 B = 4134.605797 C = 6604.220632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.085 0.915 5 C -0.123 4.123 6 C 0.118 3.882 7 N -1.016 6.016 8 S 2.794 3.206 9 O -0.972 6.972 10 O -0.982 6.982 11 N -0.986 5.986 12 C 0.246 3.754 13 C -0.524 4.524 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.141 3.859 22 C 0.037 3.963 23 O -0.368 6.368 24 C 0.031 3.969 25 C 0.156 3.844 26 H 0.068 0.932 27 C -0.173 4.173 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.034 0.966 46 H 0.036 0.964 47 H 0.078 0.922 48 H 0.054 0.946 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.969 -0.023 -8.781 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.113 4.113 4 H 0.104 0.896 5 C -0.162 4.162 6 C -0.007 4.007 7 N -0.854 5.854 8 S 2.804 3.196 9 O -0.955 6.955 10 O -0.967 6.967 11 N -0.827 5.827 12 C 0.123 3.877 13 C -0.564 4.564 14 H 0.081 0.919 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C 0.013 3.987 22 C -0.041 4.041 23 O -0.286 6.286 24 C -0.066 4.066 25 C 0.050 3.950 26 H 0.087 0.913 27 C -0.231 4.231 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.097 0.903 48 H 0.073 0.927 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.288 -0.592 -9.386 13.218 hybrid contribution -0.456 0.767 1.451 1.704 sum -9.744 0.175 -7.935 12.567 Atomic orbital electron populations 1.21758 0.95879 1.01269 1.01804 1.21531 0.95702 0.95814 1.02301 1.22361 0.94464 0.96292 0.98230 0.89618 1.22820 0.97957 0.97751 0.97697 1.21901 0.84649 0.95424 0.98775 1.59348 1.22517 1.43527 1.60011 1.01565 0.71783 0.73084 0.73186 1.93591 1.86209 1.79149 1.36582 1.93548 1.66367 1.52038 1.84717 1.57724 1.72652 1.16612 1.35694 1.19185 0.92620 0.97897 0.77949 1.21444 1.00131 1.44377 0.90416 0.91868 1.24923 0.94998 0.95243 0.98720 1.69950 1.16638 1.45746 1.20513 0.86596 0.80915 0.78148 0.82658 1.19744 1.20975 1.21133 1.21024 0.94852 0.83889 0.98887 1.23119 0.99774 0.95230 0.86010 1.88167 1.47371 1.59259 1.33829 1.22680 0.89024 0.98105 0.96813 1.21299 0.93681 0.89138 0.90869 0.91347 1.22450 1.03605 1.02982 0.94076 0.93053 0.92769 0.92708 0.91863 0.91595 0.90600 0.90939 0.92017 0.90618 0.93061 0.95263 0.92749 0.91443 0.88300 0.93296 0.92593 0.90171 0.94777 0.94571 0.90308 0.92663 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.76 37.16 0.36 -0.96 16 2 C -0.12 -1.23 5.29 -26.73 -0.14 -1.37 16 3 C -0.09 -1.17 2.50 -88.78 -0.22 -1.39 16 4 H 0.09 1.07 7.86 -51.94 -0.41 0.66 16 5 C -0.12 -1.40 5.68 -24.58 -0.14 -1.54 16 6 C 0.12 1.65 7.14 -2.53 -0.02 1.63 16 7 N -1.02 -17.63 3.46 -104.42 -0.36 -18.00 16 8 S 2.79 58.46 5.97 -107.50 -0.64 57.82 16 9 O -0.97 -21.08 14.64 -65.62 -0.96 -22.04 16 10 O -0.98 -23.72 15.55 -57.17 -0.89 -24.60 16 11 N -0.99 -20.61 2.87 -115.66 -0.33 -20.94 16 12 C 0.25 6.00 5.15 -5.19 -0.03 5.97 16 13 C -0.52 -12.99 6.52 -34.44 -0.22 -13.21 16 14 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 17 Si 0.89 20.14 29.54 -169.99 -5.02 15.11 16 18 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.14 2.50 5.72 -4.04 -0.02 2.48 16 22 C 0.04 0.63 6.28 37.16 0.23 0.86 16 23 O -0.37 -6.83 8.59 -55.46 -0.48 -7.31 16 24 C 0.03 0.44 11.01 101.05 1.11 1.55 16 25 C 0.16 2.54 2.99 -66.96 -0.20 2.34 16 26 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 27 C -0.17 -3.20 8.29 37.16 0.31 -2.89 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.45 7.49 -51.93 -0.39 0.06 16 31 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.07 0.79 8.02 -51.93 -0.42 0.37 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.03 7.81 -51.93 -0.41 0.63 16 37 H 0.05 1.39 5.78 -51.93 -0.30 1.09 16 38 H 0.03 0.77 8.04 -51.93 -0.42 0.35 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.07 1.09 7.70 -51.93 -0.40 0.69 16 41 H 0.10 1.70 7.53 -51.93 -0.39 1.31 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 1.53 6.63 -51.93 -0.34 1.19 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.08 1.70 5.79 -51.93 -0.30 1.40 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -31.56 390.66 -9.90 -41.45 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -8.76 Total: 1.70 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 0.92 Total: -4.96 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.04 Total: -63.06 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -2.33 Total: -53.96 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 58.46 SS G_CDS: -0.64 Total: 57.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.56 -9.90 -41.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413320948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.142 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds