Wall clock time and date at job start Tue Mar 31 2020 17:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47123 * 2 1 4 4 H 1.08989 * 110.63964 * 56.68475 * 3 2 1 5 5 C 1.55163 * 110.71725 * 293.54435 * 3 2 1 6 6 C 1.54906 * 101.58153 * 206.13550 * 5 3 2 7 7 N 1.47431 * 104.83121 * 37.01023 * 6 5 3 8 8 S 1.65601 * 125.64888 * 155.83693 * 7 6 5 9 9 O 1.42100 * 106.39915 * 330.98368 * 8 7 6 10 10 O 1.42091 * 106.40228 * 198.06156 * 8 7 6 11 11 N 1.65596 * 107.21744 * 84.51989 * 8 7 6 12 12 C 1.46504 * 120.00079 * 93.31691 * 11 8 7 13 13 C 1.50695 * 109.47408 * 246.21513 * 12 11 8 14 14 H 1.08002 * 120.00333 * 3.12243 * 13 12 11 15 15 C 1.37876 * 120.00289 * 183.11793 * 13 12 11 16 16 N 1.31515 * 120.00004 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00218 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47099 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47389 * 120.00180 * 17 15 13 20 20 H 1.48507 * 109.47044 * 239.99812 * 17 15 13 21 21 C 1.46504 * 120.00295 * 273.04264 * 11 8 7 22 22 C 1.53003 * 109.46973 * 265.27286 * 21 11 8 23 23 O 1.42903 * 109.46737 * 64.99976 * 22 21 11 24 24 C 1.42898 * 113.99909 * 179.97438 * 23 22 21 25 25 C 1.47017 * 108.70442 * 336.09776 * 7 6 5 26 26 H 1.09000 * 109.88364 * 120.25092 * 25 7 6 27 27 C 1.52998 * 109.88682 * 241.41885 * 25 7 6 28 28 H 1.08995 * 109.46938 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47443 * 300.00543 * 1 2 3 30 30 H 1.09002 * 109.46943 * 60.00196 * 1 2 3 31 31 H 1.09002 * 109.47429 * 240.00244 * 2 1 3 32 32 H 1.08999 * 109.47199 * 119.99332 * 2 1 3 33 33 H 1.08996 * 111.00480 * 88.05954 * 5 3 2 34 34 H 1.09000 * 111.00463 * 324.21081 * 5 3 2 35 35 H 1.09000 * 110.36742 * 278.17314 * 6 5 3 36 36 H 1.08998 * 110.37049 * 155.84858 * 6 5 3 37 37 H 1.09002 * 109.46647 * 6.21804 * 12 11 8 38 38 H 1.09001 * 109.47301 * 126.21040 * 12 11 8 39 39 H 0.97001 * 120.00367 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.47209 * 25.27400 * 21 11 8 41 41 H 1.09005 * 109.47168 * 145.28062 * 21 11 8 42 42 H 1.08996 * 109.47108 * 184.99805 * 22 21 11 43 43 H 1.08997 * 109.47362 * 305.00308 * 22 21 11 44 44 H 1.08996 * 109.47534 * 180.02562 * 24 23 22 45 45 H 1.08995 * 109.47599 * 300.00337 * 24 23 22 46 46 H 1.09005 * 109.47213 * 60.00448 * 24 23 22 47 47 H 1.09002 * 109.47452 * 54.25153 * 27 25 7 48 48 H 1.08994 * 109.47348 * 174.25819 * 27 25 7 49 49 H 1.08998 * 109.46641 * 294.25475 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6399 1.9915 0.8523 5 6 1.6764 2.1533 -1.3305 6 6 2.7875 3.2287 -1.4223 7 7 3.9953 2.5697 -0.8926 8 16 5.5577 2.9908 -1.2448 9 8 5.5380 3.5484 -2.5517 10 8 6.3638 1.8767 -0.8871 11 7 5.9772 4.2204 -0.2180 12 6 6.6480 3.9198 1.0493 13 6 5.7389 4.2788 2.1963 14 1 4.7408 4.6422 2.0011 15 6 6.1813 4.1431 3.4951 16 7 7.3965 3.6999 3.7330 17 14 5.0542 4.5873 4.9170 18 1 3.7493 5.0570 4.3861 19 1 4.8403 3.3917 5.7713 20 1 5.6774 5.6671 5.7239 21 6 5.6830 5.6093 -0.5796 22 6 6.9093 6.2325 -1.2497 23 8 7.1660 5.5658 -2.4873 24 6 8.2969 6.0743 -3.1977 25 6 3.5829 1.4727 -0.0049 26 1 3.9728 0.5263 -0.3794 27 6 4.1000 1.7277 1.4123 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 0.6905 2.6143 -1.2704 34 1 1.7318 1.4614 -2.1709 35 1 2.5292 4.0942 -0.8122 36 1 2.9420 3.5270 -2.4593 37 1 6.8844 2.8566 1.0919 38 1 7.5682 4.4997 1.1198 39 1 7.7079 3.6048 4.6467 40 1 4.8398 5.6343 -1.2698 41 1 5.4340 6.1738 0.3190 42 1 6.7222 7.2896 -1.4384 43 1 7.7739 6.1278 -0.5944 44 1 8.4243 5.5163 -4.1253 45 1 8.1383 7.1280 -3.4268 46 1 9.1906 5.9666 -2.5830 47 1 3.7731 2.7122 1.7467 48 1 3.7062 0.9660 2.0852 49 1 5.1892 1.6864 1.4144 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413320948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:56 Heat of formation + Delta-G solvation = -150.328930 kcal Electronic energy + Delta-G solvation = -30052.257768 eV Core-core repulsion = 26140.155144 eV Total energy + Delta-G solvation = -3912.102623 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.05215 -39.03860 -38.20107 -37.01901 -36.74421 -34.77587 -34.49486 -32.22462 -30.91818 -30.20794 -28.47386 -27.04251 -26.55565 -24.83228 -23.59894 -23.17681 -22.57143 -21.01429 -19.57733 -18.71659 -18.43940 -18.14303 -17.65453 -17.05707 -16.82068 -16.40244 -16.12451 -15.79955 -15.32639 -15.27617 -15.00861 -14.69520 -14.47367 -14.39219 -13.92558 -13.66413 -13.57798 -13.38174 -13.30772 -13.12491 -13.05337 -13.00902 -12.87619 -12.78352 -12.66628 -12.59497 -12.41480 -12.29356 -12.26913 -12.02075 -11.89254 -11.73050 -11.53039 -11.42520 -11.37109 -11.15937 -10.56079 -10.51459 -9.92685 -9.67293 -8.11352 -6.22025 -0.24879 1.43550 1.46252 1.56381 2.07632 2.45891 2.67525 3.00363 3.21376 3.34871 3.65119 3.84429 3.90165 4.09740 4.22778 4.28434 4.34485 4.40780 4.42484 4.53585 4.55186 4.56598 4.60364 4.63602 4.72613 4.73878 4.82758 4.83554 4.95784 4.96711 5.03031 5.06069 5.11127 5.19116 5.28672 5.30329 5.34696 5.41234 5.49664 5.51758 5.59037 5.63061 5.66708 5.84377 6.00199 6.18124 6.37013 6.88322 7.45971 8.97921 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008349 B = 0.006770 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3352.990826 B = 4134.605797 C = 6604.220632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.091 0.909 5 C -0.112 4.112 6 C 0.107 3.893 7 N -1.016 6.016 8 S 2.802 3.198 9 O -0.980 6.980 10 O -1.024 7.024 11 N -0.990 5.990 12 C 0.265 3.735 13 C -0.512 4.512 14 H 0.074 0.926 15 C 0.012 3.988 16 N -0.933 5.933 17 Si 0.954 3.046 18 H -0.255 1.255 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.132 3.868 22 C 0.037 3.963 23 O -0.401 6.401 24 C 0.023 3.977 25 C 0.151 3.849 26 H 0.060 0.940 27 C -0.166 4.166 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.016 0.984 38 H 0.003 0.997 39 H 0.262 0.738 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.038 0.962 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 1.036 -9.250 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.104 4.104 4 H 0.109 0.891 5 C -0.151 4.151 6 C -0.018 4.018 7 N -0.857 5.857 8 S 2.814 3.186 9 O -0.964 6.964 10 O -1.009 7.009 11 N -0.830 5.830 12 C 0.142 3.858 13 C -0.551 4.551 14 H 0.092 0.908 15 C -0.187 4.187 16 N -0.573 5.573 17 Si 0.779 3.221 18 H -0.179 1.179 19 H -0.212 1.212 20 H -0.212 1.212 21 C 0.006 3.994 22 C -0.041 4.041 23 O -0.320 6.320 24 C -0.073 4.073 25 C 0.045 3.955 26 H 0.078 0.922 27 C -0.224 4.224 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.021 0.979 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.695 0.496 -9.890 16.101 hybrid contribution 0.629 0.429 1.517 1.698 sum -12.066 0.925 -8.373 14.716 Atomic orbital electron populations 1.21722 0.94007 1.02083 1.02433 1.21532 0.97223 0.94338 1.02174 1.22328 0.90898 0.97902 0.99321 0.89066 1.22844 0.98363 0.96872 0.96996 1.22258 0.83889 0.96627 0.99015 1.59088 1.22333 1.44006 1.60296 1.01016 0.72339 0.72380 0.72912 1.93567 1.86728 1.79190 1.36926 1.93487 1.68427 1.53774 1.85200 1.57609 1.72894 1.18308 1.34182 1.18681 0.92102 0.95265 0.79793 1.21599 1.00203 1.42989 0.90303 0.90761 1.25727 0.96189 0.95292 1.01447 1.70096 1.18742 1.47544 1.20967 0.85569 0.79656 0.77542 0.79295 1.17864 1.21219 1.21189 1.21305 0.96173 0.82156 0.99731 1.23136 0.98578 0.97000 0.85395 1.88106 1.48898 1.60632 1.34365 1.22891 0.87913 0.99829 0.96695 1.21451 0.96715 0.88299 0.89005 0.92206 1.22343 1.00724 1.03044 0.96333 0.92253 0.92503 0.91673 0.91866 0.92069 0.87328 0.90249 0.90808 0.90301 0.96565 0.97897 0.92877 0.89489 0.87673 0.89641 0.94348 0.89450 0.92033 0.94493 0.91214 0.90887 0.94880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.76 71.98 0.70 -1.35 16 2 C -0.11 -2.15 5.29 30.60 0.16 -1.99 16 3 C -0.08 -1.89 2.50 -9.60 -0.02 -1.91 16 4 H 0.09 1.98 7.86 -2.39 -0.02 1.96 16 5 C -0.11 -2.13 5.68 31.99 0.18 -1.95 16 6 C 0.11 2.70 7.14 86.85 0.62 3.32 16 7 N -1.02 -34.77 3.46 -484.29 -1.67 -36.45 16 8 S 2.80 119.97 5.97 -56.49 -0.34 119.64 16 9 O -0.98 -42.62 14.64 -119.92 -1.76 -44.38 16 10 O -1.02 -52.20 15.55 -128.00 -1.99 -54.19 16 11 N -0.99 -42.32 2.87 -519.83 -1.49 -43.82 16 12 C 0.27 13.57 5.15 85.63 0.44 14.01 16 13 C -0.51 -25.70 6.52 25.60 0.17 -25.54 16 14 H 0.07 3.51 7.33 -2.91 -0.02 3.49 16 15 C 0.01 0.64 5.46 84.65 0.46 1.10 16 16 N -0.93 -53.86 13.29 21.45 0.28 -53.58 16 17 Si 0.95 41.15 29.54 68.60 2.03 43.18 16 18 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 21 C 0.13 4.61 5.72 86.38 0.49 5.11 16 22 C 0.04 1.23 6.28 71.98 0.45 1.68 16 23 O -0.40 -14.71 8.59 -129.64 -1.11 -15.82 16 24 C 0.02 0.64 11.01 113.37 1.25 1.89 16 25 C 0.15 4.85 2.99 45.34 0.14 4.98 16 26 H 0.06 2.01 7.82 -2.39 -0.02 1.99 16 27 C -0.17 -6.22 8.29 71.98 0.60 -5.63 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.80 7.49 -2.39 -0.02 0.78 16 31 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.44 8.13 -2.39 -0.02 1.42 16 34 H 0.08 1.44 8.02 -2.39 -0.02 1.42 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.96 7.81 -2.39 -0.02 1.94 16 37 H 0.02 0.95 5.78 -2.39 -0.01 0.94 16 38 H 0.00 0.17 8.04 -2.39 -0.02 0.15 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.09 2.68 7.70 -2.39 -0.02 2.66 16 41 H 0.11 3.50 7.53 -2.38 -0.02 3.48 16 42 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.04 1.38 8.04 -2.39 -0.02 1.36 16 44 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.07 2.69 6.63 -2.39 -0.02 2.67 16 48 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.03 1.52 5.79 -2.39 -0.01 1.50 16 Total: -1.00 -70.96 390.66 0.49 -70.47 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.90 Total: 21.21 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.64 Total: -6.26 kcal Atomic # 7 Polarization: -130.96 SS G_CDS: -2.88 Total: -133.84 kcal Atomic # 8 Polarization: -109.53 SS G_CDS: -4.86 Total: -114.39 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 119.97 SS G_CDS: -0.34 Total: 119.64 kcal Total: -70.96 0.49 -70.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413320948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.864 kcal (2) G-P(sol) polarization free energy of solvation -70.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds