Wall clock time and date at job start Tue Mar 31 2020 17:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.08997 * 110.67337 * 52.02985 * 3 2 1 5 5 O 1.44382 * 110.61816 * 289.07012 * 3 2 1 6 6 C 1.43741 * 106.97901 * 201.43832 * 5 3 2 7 7 C 1.54104 * 107.29073 * 26.51251 * 6 5 3 8 8 C 1.54811 * 104.18975 * 357.97086 * 7 6 5 9 9 H 1.09004 * 110.90795 * 97.31576 * 8 7 6 10 10 N 1.46495 * 110.90893 * 220.92299 * 8 7 6 11 11 C 1.34779 * 119.99795 * 273.54396 * 10 8 7 12 12 O 1.21585 * 120.00271 * 0.02562 * 11 10 8 13 13 N 1.34775 * 119.99897 * 179.97438 * 11 10 8 14 14 C 1.46502 * 120.00043 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.38323 * 119.96183 * 90.00198 * 15 14 13 17 17 C 1.38274 * 120.13732 * 179.97438 * 16 15 14 18 18 C 1.38126 * 120.07052 * 359.97438 * 17 16 15 19 19 C 1.38857 * 119.92753 * 0.02562 * 18 17 16 20 20 O 1.35756 * 120.06604 * 179.97438 * 19 18 17 21 21 C 1.34831 * 117.00017 * 354.46210 * 20 19 18 22 22 H 1.08001 * 119.99758 * 5.06236 * 21 20 19 23 23 C 1.38651 * 119.99791 * 185.05309 * 21 20 19 24 24 N 1.31560 * 120.00168 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99840 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47308 * 60.00303 * 25 23 21 27 27 H 1.48502 * 109.47167 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47087 * 300.00069 * 25 23 21 29 29 C 1.38071 * 119.96668 * 269.72800 * 15 14 13 30 30 H 1.08998 * 109.46894 * 299.99855 * 1 2 3 31 31 H 1.08993 * 109.47169 * 60.00507 * 1 2 3 32 32 H 1.09008 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47384 * 240.00006 * 2 1 3 34 34 H 1.09000 * 109.46909 * 119.99804 * 2 1 3 35 35 H 1.09001 * 109.88043 * 267.09302 * 6 5 3 36 36 H 1.09002 * 109.88044 * 145.93554 * 6 5 3 37 37 H 1.09001 * 110.48796 * 239.29280 * 7 6 5 38 38 H 1.09000 * 110.48747 * 116.64861 * 7 6 5 39 39 H 0.97001 * 120.00225 * 93.54898 * 10 8 7 40 40 H 0.97001 * 120.00123 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.47235 * 300.00596 * 14 13 11 42 42 H 1.08997 * 109.46650 * 60.00626 * 14 13 11 43 43 H 1.07997 * 119.93399 * 0.02562 * 16 15 14 44 44 H 1.08002 * 119.96702 * 180.02562 * 17 16 15 45 45 H 1.08000 * 120.03667 * 179.97438 * 18 17 16 46 46 H 0.96998 * 119.99667 * 179.97438 * 24 23 21 47 47 H 1.08000 * 120.03836 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5767 2.0144 0.8039 5 8 1.7932 2.0690 -1.2772 6 6 2.7072 3.1730 -1.3868 7 6 3.9333 2.8409 -0.5142 8 6 3.5845 1.4754 0.1264 9 1 4.0380 0.6565 -0.4321 10 7 3.9948 1.4374 1.5322 11 6 5.2509 1.0732 1.8579 12 8 6.0436 0.7765 0.9851 13 7 5.6286 1.0387 3.1512 14 6 6.9938 0.6422 3.5054 15 6 7.1574 0.6869 5.0028 16 6 6.8815 -0.4361 5.7617 17 6 7.0309 -0.3993 7.1359 18 6 7.4568 0.7597 7.7550 19 6 7.7346 1.8887 6.9958 20 8 8.1529 3.0295 7.6014 21 6 8.1683 3.0366 8.9496 22 1 7.9353 2.1352 9.4970 23 6 8.4834 4.2010 9.6331 24 7 8.7669 5.2991 8.9662 25 14 8.5055 4.2107 11.5009 26 1 9.5045 3.2266 11.9893 27 1 8.8686 5.5670 11.9847 28 1 7.1602 3.8466 12.0138 29 6 7.5879 1.8471 5.6152 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2317 4.0851 -1.0260 36 1 3.0143 3.2983 -2.4251 37 1 4.0702 3.5999 0.2561 38 1 4.8283 2.7557 -1.1305 39 1 3.3625 1.6743 2.2286 40 1 4.9963 1.2757 3.8476 41 1 7.1820 -0.3705 3.1489 42 1 7.7029 1.3282 3.0422 43 1 6.5495 -1.3439 5.2800 44 1 6.8151 -1.2779 7.7258 45 1 7.5729 0.7880 8.8283 46 1 8.9870 6.1137 9.4444 47 1 7.8070 2.7225 5.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477870310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:21 Heat of formation + Delta-G solvation = -85.399947 kcal Electronic energy + Delta-G solvation = -27764.814552 eV Core-core repulsion = 23720.083509 eV Total energy + Delta-G solvation = -4044.731043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59188 -39.48244 -38.98004 -36.87392 -34.92049 -34.43566 -33.85919 -32.36855 -31.40085 -30.36265 -29.15721 -28.15909 -25.89676 -25.07865 -23.82669 -22.06399 -21.72962 -21.47039 -20.83372 -20.69372 -18.67793 -17.70698 -17.31958 -16.98021 -16.35994 -15.90275 -15.51068 -15.38433 -15.10764 -14.63468 -14.52070 -14.28774 -14.01946 -13.90336 -13.75832 -13.69146 -13.49886 -13.40342 -12.90194 -12.68803 -12.40164 -12.24192 -11.93538 -11.89160 -11.69497 -11.41376 -11.31332 -11.20611 -10.98128 -10.94918 -10.85086 -10.73188 -10.51488 -10.26639 -10.05688 -9.44676 -9.37383 -8.91969 -8.85004 -8.28596 -7.36132 -6.51944 -4.11628 1.82343 2.23475 2.68548 3.08484 3.09178 3.12359 3.15825 3.49541 3.90014 4.15212 4.18136 4.32634 4.53025 4.61674 4.69468 4.77979 4.85847 4.90845 4.97259 5.04132 5.14054 5.24913 5.38297 5.40644 5.46809 5.50913 5.63476 5.69219 5.72568 5.73927 5.77319 5.82319 5.89810 5.95744 6.04401 6.22065 6.23172 6.50032 6.51948 6.54444 6.78656 6.83541 6.96983 7.15986 7.24442 7.32621 7.67731 7.91957 7.96256 8.55844 8.93250 9.61700 10.65670 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.002011 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.457366 B =13923.280162 C =14375.235693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.075 0.925 5 O -0.367 6.367 6 C 0.048 3.952 7 C -0.171 4.171 8 C 0.139 3.861 9 H 0.104 0.896 10 N -0.739 5.739 11 C 0.705 3.295 12 O -0.592 6.592 13 N -0.735 5.735 14 C 0.187 3.813 15 C -0.073 4.073 16 C -0.194 4.194 17 C -0.076 4.076 18 C -0.226 4.226 19 C 0.150 3.850 20 O -0.176 6.176 21 C -0.394 4.394 22 H 0.092 0.908 23 C 0.040 3.960 24 N -0.861 5.861 25 Si 0.941 3.059 26 H -0.269 1.269 27 H -0.278 1.278 28 H -0.270 1.270 29 C -0.170 4.170 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.397 0.603 40 H 0.399 0.601 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.128 0.872 46 H 0.271 0.729 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.989 -7.801 -14.384 21.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.014 3.986 4 H 0.093 0.907 5 O -0.286 6.286 6 C -0.029 4.029 7 C -0.211 4.211 8 C 0.033 3.967 9 H 0.122 0.878 10 N -0.396 5.396 11 C 0.405 3.595 12 O -0.470 6.470 13 N -0.390 5.390 14 C 0.064 3.936 15 C -0.074 4.074 16 C -0.214 4.214 17 C -0.095 4.095 18 C -0.245 4.245 19 C 0.096 3.904 20 O -0.079 6.079 21 C -0.470 4.470 22 H 0.109 0.891 23 C -0.165 4.165 24 N -0.495 5.495 25 Si 0.766 3.234 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.190 4.190 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.231 0.769 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.145 0.855 46 H 0.081 0.919 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.231 -7.667 -15.394 21.698 hybrid contribution -0.322 0.416 1.913 1.984 sum -13.553 -7.251 -13.481 20.445 Atomic orbital electron populations 1.21737 0.94994 1.01799 1.02249 1.21573 0.96814 0.93796 1.03289 1.23366 0.92978 0.95038 0.87230 0.90728 1.88923 1.58450 1.45292 1.35912 1.23143 0.89039 0.89870 1.00858 1.23379 0.99314 0.97972 1.00392 1.22315 0.94191 0.98359 0.81855 0.87777 1.44953 1.12446 1.74408 1.07765 1.15914 0.82064 0.78208 0.83288 1.90920 1.51996 1.56140 1.47957 1.45263 1.14925 1.73154 1.05623 1.20007 0.81770 1.00606 0.91235 1.19270 1.00970 0.93809 0.93328 1.20480 1.09311 0.97822 0.93775 1.20749 0.97640 0.96817 0.94262 1.21242 1.08835 0.93626 1.00812 1.19334 0.91800 0.87293 0.91994 1.83984 1.71764 1.30018 1.22141 1.21275 1.49503 0.98100 0.78118 0.89082 1.25298 0.96391 0.94184 1.00591 1.70027 1.42495 1.00661 1.36364 0.85777 0.79119 0.78032 0.80490 1.19455 1.20237 1.19484 1.20091 1.08332 0.98330 0.92231 0.92758 0.92053 0.92543 0.90762 0.90331 0.92136 0.89544 0.90033 0.89639 0.76855 0.76680 0.91079 0.91019 0.87494 0.87291 0.85475 0.91879 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.86 37.16 0.37 -0.63 16 2 C -0.12 -0.85 5.69 -26.73 -0.15 -1.00 16 3 C 0.07 0.57 2.90 -25.68 -0.07 0.50 16 4 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 5 O -0.37 -3.46 11.08 -35.23 -0.39 -3.85 16 6 C 0.05 0.38 7.70 37.73 0.29 0.67 16 7 C -0.17 -1.53 6.76 -25.20 -0.17 -1.70 16 8 C 0.14 1.31 2.84 -65.92 -0.19 1.12 16 9 H 0.10 1.16 7.63 -51.93 -0.40 0.76 16 10 N -0.74 -7.08 5.17 -56.72 -0.29 -7.37 16 11 C 0.71 9.35 8.56 -86.92 -0.74 8.60 16 12 O -0.59 -10.12 16.08 5.29 0.09 -10.03 16 13 N -0.73 -9.26 5.55 -66.41 -0.37 -9.63 16 14 C 0.19 2.69 5.80 -5.19 -0.03 2.66 16 15 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 16 C -0.19 -3.08 9.70 -39.54 -0.38 -3.47 16 17 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 18 C -0.23 -4.62 9.17 -39.39 -0.36 -4.98 16 19 C 0.15 3.43 6.65 -39.11 -0.26 3.17 16 20 O -0.18 -4.84 9.76 0.03 0.00 -4.84 16 21 C -0.39 -10.65 9.49 30.88 0.29 -10.36 16 22 H 0.09 2.26 5.20 -52.49 -0.27 1.99 16 23 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 24 N -0.86 -24.69 13.67 55.48 0.76 -23.93 16 25 Si 0.94 19.94 29.55 -169.99 -5.02 14.92 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 28 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 29 C -0.17 -3.36 9.64 -39.40 -0.38 -3.74 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 32 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.74 8.06 -51.93 -0.42 0.32 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.40 2.82 8.54 -40.82 -0.35 2.47 16 40 H 0.40 4.39 8.48 -40.82 -0.35 4.04 16 41 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 42 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.13 2.61 5.64 -52.49 -0.30 2.32 16 46 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 47 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -31.98 392.98 -9.26 -41.24 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.12 Total: 9.21 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.84 Total: -11.63 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.10 Total: -40.93 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.31 Total: -18.73 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.98 -9.26 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477870310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.156 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds