Wall clock time and date at job start Tue Mar 31 2020 17:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 H 1.08997 * 110.67337 * 52.02985 * 3 2 1 5 5 O 1.44382 * 110.61816 * 289.07012 * 3 2 1 6 6 C 1.43741 * 106.97901 * 201.43832 * 5 3 2 7 7 C 1.54104 * 107.29073 * 26.51251 * 6 5 3 8 8 C 1.54811 * 104.18975 * 357.97086 * 7 6 5 9 9 H 1.09004 * 110.90795 * 97.31576 * 8 7 6 10 10 N 1.46495 * 110.90893 * 220.92299 * 8 7 6 11 11 C 1.34779 * 119.99795 * 273.54396 * 10 8 7 12 12 O 1.21585 * 120.00271 * 0.02562 * 11 10 8 13 13 N 1.34775 * 119.99897 * 179.97438 * 11 10 8 14 14 C 1.46502 * 120.00043 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47075 * 179.97438 * 14 13 11 16 16 C 1.38323 * 119.96183 * 90.00198 * 15 14 13 17 17 C 1.38274 * 120.13732 * 179.97438 * 16 15 14 18 18 C 1.38126 * 120.07052 * 359.97438 * 17 16 15 19 19 C 1.38857 * 119.92753 * 0.02562 * 18 17 16 20 20 O 1.35756 * 120.06604 * 179.97438 * 19 18 17 21 21 C 1.34831 * 117.00017 * 354.46210 * 20 19 18 22 22 H 1.08001 * 119.99758 * 5.06236 * 21 20 19 23 23 C 1.38651 * 119.99791 * 185.05309 * 21 20 19 24 24 N 1.31560 * 120.00168 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99840 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47308 * 60.00303 * 25 23 21 27 27 H 1.48502 * 109.47167 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47087 * 300.00069 * 25 23 21 29 29 C 1.38071 * 119.96668 * 269.72800 * 15 14 13 30 30 H 1.08998 * 109.46894 * 299.99855 * 1 2 3 31 31 H 1.08993 * 109.47169 * 60.00507 * 1 2 3 32 32 H 1.09008 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47384 * 240.00006 * 2 1 3 34 34 H 1.09000 * 109.46909 * 119.99804 * 2 1 3 35 35 H 1.09001 * 109.88043 * 267.09302 * 6 5 3 36 36 H 1.09002 * 109.88044 * 145.93554 * 6 5 3 37 37 H 1.09001 * 110.48796 * 239.29280 * 7 6 5 38 38 H 1.09000 * 110.48747 * 116.64861 * 7 6 5 39 39 H 0.97001 * 120.00225 * 93.54898 * 10 8 7 40 40 H 0.97001 * 120.00123 * 0.02562 * 13 11 10 41 41 H 1.08997 * 109.47235 * 300.00596 * 14 13 11 42 42 H 1.08997 * 109.46650 * 60.00626 * 14 13 11 43 43 H 1.07997 * 119.93399 * 0.02562 * 16 15 14 44 44 H 1.08002 * 119.96702 * 180.02562 * 17 16 15 45 45 H 1.08000 * 120.03667 * 179.97438 * 18 17 16 46 46 H 0.96998 * 119.99667 * 179.97438 * 24 23 21 47 47 H 1.08000 * 120.03836 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5767 2.0144 0.8039 5 8 1.7932 2.0690 -1.2772 6 6 2.7072 3.1730 -1.3868 7 6 3.9333 2.8409 -0.5142 8 6 3.5845 1.4754 0.1264 9 1 4.0380 0.6565 -0.4321 10 7 3.9948 1.4374 1.5322 11 6 5.2509 1.0732 1.8579 12 8 6.0436 0.7765 0.9851 13 7 5.6286 1.0387 3.1512 14 6 6.9938 0.6422 3.5054 15 6 7.1574 0.6869 5.0028 16 6 6.8815 -0.4361 5.7617 17 6 7.0309 -0.3993 7.1359 18 6 7.4568 0.7597 7.7550 19 6 7.7346 1.8887 6.9958 20 8 8.1529 3.0295 7.6014 21 6 8.1683 3.0366 8.9496 22 1 7.9353 2.1352 9.4970 23 6 8.4834 4.2010 9.6331 24 7 8.7669 5.2991 8.9662 25 14 8.5055 4.2107 11.5009 26 1 9.5045 3.2266 11.9893 27 1 8.8686 5.5670 11.9847 28 1 7.1602 3.8466 12.0138 29 6 7.5879 1.8471 5.6152 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2317 4.0851 -1.0260 36 1 3.0143 3.2983 -2.4251 37 1 4.0702 3.5999 0.2561 38 1 4.8283 2.7557 -1.1305 39 1 3.3625 1.6743 2.2286 40 1 4.9963 1.2757 3.8476 41 1 7.1820 -0.3705 3.1489 42 1 7.7029 1.3282 3.0422 43 1 6.5495 -1.3439 5.2800 44 1 6.8151 -1.2779 7.7258 45 1 7.5729 0.7880 8.8283 46 1 8.9870 6.1137 9.4444 47 1 7.8070 2.7225 5.0217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477870310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:20 Heat of formation + Delta-G solvation = -107.462588 kcal Electronic energy + Delta-G solvation = -27765.771260 eV Core-core repulsion = 23720.083509 eV Total energy + Delta-G solvation = -4045.687751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50360 -40.83554 -40.14962 -38.47799 -35.90679 -35.60374 -34.46804 -34.28158 -32.51786 -31.45587 -30.69059 -28.89210 -27.51555 -26.62294 -24.48232 -23.27659 -22.94209 -22.36058 -22.11355 -21.62483 -19.89587 -19.28259 -18.72765 -18.06381 -17.15597 -16.84985 -16.63220 -16.59692 -16.28385 -16.13146 -16.06800 -15.52839 -15.44049 -14.93004 -14.75002 -14.59144 -14.44339 -14.32506 -14.02468 -13.91816 -13.77164 -13.54401 -13.28989 -13.01064 -12.59990 -12.54204 -12.53501 -12.35921 -12.26019 -12.13761 -11.95157 -11.78495 -11.67429 -11.44913 -11.20301 -10.80019 -10.71899 -10.40190 -9.83802 -9.76497 -9.02843 -8.46689 -6.15222 0.36957 0.71391 1.35981 1.45828 1.51896 1.68218 2.10043 2.17890 2.75817 2.85735 3.13234 3.36976 3.40541 3.49312 3.63033 3.83888 3.92672 4.06122 4.10459 4.12560 4.21905 4.32079 4.40340 4.43564 4.51311 4.53978 4.66944 4.73873 4.76445 4.80298 4.86930 4.96457 5.02310 5.02954 5.11720 5.12039 5.20939 5.26520 5.38962 5.41884 5.43103 5.63019 5.71454 5.72783 5.85937 5.94819 6.02130 6.17786 6.98085 7.02705 7.52854 7.78491 8.76130 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016395 B = 0.002011 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.457366 B =13923.280162 C =14375.235693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.079 3.921 4 H 0.090 0.910 5 O -0.382 6.382 6 C 0.050 3.950 7 C -0.170 4.170 8 C 0.138 3.862 9 H 0.085 0.915 10 N -0.722 5.722 11 C 0.705 3.295 12 O -0.631 6.631 13 N -0.728 5.728 14 C 0.194 3.806 15 C -0.057 4.057 16 C -0.167 4.167 17 C -0.070 4.070 18 C -0.234 4.234 19 C 0.111 3.889 20 O -0.232 6.232 21 C -0.412 4.412 22 H 0.104 0.896 23 C -0.023 4.023 24 N -0.921 5.921 25 Si 1.017 2.983 26 H -0.258 1.258 27 H -0.274 1.274 28 H -0.256 1.256 29 C -0.180 4.180 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.409 0.591 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.120 0.880 46 H 0.272 0.728 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.004 -10.356 -14.123 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.108 0.892 5 O -0.301 6.301 6 C -0.027 4.027 7 C -0.209 4.209 8 C 0.031 3.969 9 H 0.104 0.896 10 N -0.378 5.378 11 C 0.405 3.595 12 O -0.512 6.512 13 N -0.383 5.383 14 C 0.070 3.930 15 C -0.058 4.058 16 C -0.185 4.185 17 C -0.088 4.088 18 C -0.254 4.254 19 C 0.061 3.939 20 O -0.139 6.139 21 C -0.488 4.488 22 H 0.121 0.879 23 C -0.221 4.221 24 N -0.559 5.559 25 Si 0.837 3.163 26 H -0.182 1.182 27 H -0.199 1.199 28 H -0.180 1.180 29 C -0.200 4.200 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.245 0.755 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.166 0.834 44 H 0.166 0.834 45 H 0.138 0.862 46 H 0.081 0.919 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.309 -10.266 -15.147 23.857 hybrid contribution 0.205 0.950 1.553 1.832 sum -15.104 -9.316 -13.594 22.354 Atomic orbital electron populations 1.21711 0.94335 1.02290 1.02150 1.21587 0.97333 0.93268 1.03229 1.23402 0.91629 0.95681 0.87233 0.89212 1.88914 1.58766 1.45818 1.36635 1.23205 0.88315 0.89920 1.01249 1.23340 0.99495 0.97692 1.00411 1.22321 0.95305 0.97944 0.81292 0.89649 1.44765 1.11467 1.73166 1.08452 1.16001 0.82657 0.77992 0.82838 1.90902 1.53407 1.57932 1.49006 1.45048 1.14396 1.73070 1.05826 1.19862 0.82548 1.01163 0.89409 1.19426 0.99193 0.92727 0.94461 1.20995 1.05684 0.98525 0.93341 1.21164 0.95854 0.96602 0.95140 1.21378 1.09169 0.94205 1.00606 1.19868 0.93437 0.87288 0.93298 1.83950 1.74941 1.32533 1.22472 1.21781 1.49535 0.98887 0.78644 0.87893 1.26580 0.95864 0.93514 1.06137 1.70182 1.45545 1.01593 1.38603 0.84661 0.79866 0.78283 0.73518 1.18193 1.19903 1.18013 1.20220 1.09011 0.99525 0.91244 0.91989 0.92978 0.91810 0.91599 0.89650 0.90832 0.88692 0.90071 0.90836 0.75062 0.75519 0.89681 0.92235 0.83381 0.83357 0.86185 0.91900 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.86 71.98 0.71 -0.95 16 2 C -0.12 -1.49 5.69 30.60 0.17 -1.32 16 3 C 0.08 1.11 2.90 31.28 0.09 1.20 16 4 H 0.09 1.02 8.01 -2.39 -0.02 1.00 16 5 O -0.38 -6.65 11.08 -148.98 -1.65 -8.30 16 6 C 0.05 0.72 7.70 72.36 0.56 1.27 16 7 C -0.17 -2.91 6.76 31.59 0.21 -2.70 16 8 C 0.14 2.43 2.84 46.29 0.13 2.56 16 9 H 0.09 1.87 7.63 -2.39 -0.02 1.85 16 10 N -0.72 -12.53 5.17 -451.61 -2.33 -14.86 16 11 C 0.71 17.58 8.56 179.05 1.53 19.12 16 12 O -0.63 -21.08 16.08 -3.98 -0.06 -21.15 16 13 N -0.73 -16.74 5.55 -482.30 -2.68 -19.42 16 14 C 0.19 5.16 5.80 85.63 0.50 5.65 16 15 C -0.06 -1.75 5.25 -19.88 -0.10 -1.86 16 16 C -0.17 -4.53 9.70 22.30 0.22 -4.31 16 17 C -0.07 -2.11 10.04 22.25 0.22 -1.89 16 18 C -0.23 -9.42 9.17 22.39 0.21 -9.21 16 19 C 0.11 5.25 6.65 22.58 0.15 5.40 16 20 O -0.23 -13.55 9.76 -22.81 -0.22 -13.77 16 21 C -0.41 -23.28 9.49 67.92 0.64 -22.63 16 22 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 23 C -0.02 -1.30 5.49 84.83 0.47 -0.84 16 24 N -0.92 -55.73 13.67 21.61 0.30 -55.44 16 25 Si 1.02 41.71 29.55 68.60 2.03 43.74 16 26 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 29 C -0.18 -7.21 9.64 22.39 0.22 -6.99 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.69 8.06 -2.39 -0.02 0.67 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.39 8.06 -2.39 -0.02 1.37 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.41 4.78 8.54 -92.71 -0.79 3.99 16 40 H 0.41 7.90 8.48 -92.71 -0.79 7.11 16 41 H 0.09 2.10 8.09 -2.39 -0.02 2.08 16 42 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 43 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 45 H 0.12 4.93 5.64 -2.91 -0.02 4.91 16 46 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -74.29 392.98 0.72 -73.57 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.58 Total: 33.13 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: 5.92 Total: -17.50 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -4.72 Total: -89.72 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.94 Total: -43.22 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -74.29 0.72 -73.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477870310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.890 kcal (2) G-P(sol) polarization free energy of solvation -74.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds