Wall clock time and date at job start Tue Mar 31 2020 17:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 H 1.09000 * 109.47229 * 305.24498 * 3 2 1 5 5 C 1.53003 * 109.46902 * 185.23990 * 3 2 1 6 6 C 1.52999 * 109.47041 * 66.27537 * 5 3 2 7 7 F 1.39902 * 109.47386 * 53.65720 * 6 5 3 8 8 F 1.39892 * 109.47129 * 173.66027 * 6 5 3 9 9 F 1.39905 * 109.46867 * 293.66195 * 6 5 3 10 10 C 1.50705 * 109.46963 * 65.24447 * 3 2 1 11 11 O 1.21281 * 119.99820 * 27.04400 * 10 3 2 12 12 N 1.34769 * 119.99869 * 207.31600 * 10 3 2 13 13 C 1.46751 * 125.33219 * 4.51070 * 12 10 3 14 14 C 1.54094 * 106.63849 * 161.58275 * 13 12 10 15 15 H 1.08990 * 113.49784 * 151.36685 * 14 13 12 16 16 C 1.53969 * 109.44651 * 278.64188 * 14 13 12 17 17 N 1.46776 * 106.62738 * 138.17554 * 16 14 13 18 18 C 1.36936 * 125.33912 * 161.52103 * 17 16 14 19 19 H 1.07996 * 119.99974 * 5.34948 * 18 17 16 20 20 C 1.38810 * 120.00135 * 185.35555 * 18 17 16 21 21 N 1.31616 * 119.99876 * 5.90397 * 20 18 17 22 22 Si 1.86800 * 119.99937 * 185.89765 * 20 18 17 23 23 H 1.48501 * 109.47178 * 94.99947 * 22 20 18 24 24 H 1.48502 * 109.47103 * 214.99575 * 22 20 18 25 25 H 1.48494 * 109.47102 * 334.99468 * 22 20 18 26 26 C 1.46675 * 109.32282 * 341.48093 * 17 16 14 27 27 C 1.53722 * 107.94238 * 0.54467 * 26 17 16 28 28 H 1.09000 * 113.05553 * 139.99711 * 27 26 17 29 29 C 1.46643 * 125.32884 * 184.81371 * 12 10 3 30 30 H 1.09001 * 109.47547 * 64.65576 * 1 2 3 31 31 H 1.08996 * 109.47308 * 184.65975 * 1 2 3 32 32 H 1.09002 * 109.47102 * 304.65983 * 1 2 3 33 33 H 1.09001 * 109.47255 * 240.00267 * 2 1 3 34 34 H 1.09004 * 109.47152 * 120.00193 * 2 1 3 35 35 H 1.09005 * 109.46831 * 186.26838 * 5 3 2 36 36 H 1.08997 * 109.47424 * 306.27184 * 5 3 2 37 37 H 1.08995 * 110.00505 * 281.01126 * 13 12 10 38 38 H 1.09004 * 110.00516 * 42.37625 * 13 12 10 39 39 H 1.08992 * 110.02960 * 257.46888 * 16 14 13 40 40 H 1.09002 * 110.02820 * 18.88407 * 16 14 13 41 41 H 0.97000 * 120.00000 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.76989 * 240.92184 * 26 17 16 43 43 H 1.08999 * 109.76594 * 120.16768 * 26 17 16 44 44 H 1.08995 * 109.76080 * 300.44140 * 29 12 10 45 45 H 1.08997 * 109.76140 * 61.16035 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6020 1.9828 -0.8393 5 6 3.5643 1.4445 -0.1317 6 6 3.9579 0.9052 -1.5084 7 9 3.2875 1.6276 -2.5014 8 9 5.3390 1.0410 -1.6850 9 9 3.6070 -0.4462 -1.5976 10 6 1.6465 2.1144 1.2903 11 8 1.4799 1.4522 2.2926 12 7 1.4743 3.4505 1.3290 13 6 1.5469 4.3495 0.1714 14 6 0.8430 5.6570 0.5833 15 1 1.2260 6.5376 0.0679 16 6 -0.6802 5.4877 0.4353 17 7 -1.2891 6.1186 1.6124 18 6 -2.5976 6.5094 1.7136 19 1 -3.2920 6.2827 0.9182 20 6 -3.0316 7.1971 2.8386 21 7 -2.1645 7.5756 3.7537 22 14 -4.8460 7.5857 3.0537 23 1 -5.4821 6.5339 3.8871 24 1 -4.9942 8.9035 3.7219 25 1 -5.5041 7.6284 1.7232 26 6 -0.2766 6.2639 2.6635 27 6 1.0506 5.7081 2.1227 28 1 1.9139 6.3077 2.4116 29 6 1.1914 4.2344 2.5356 30 1 -0.3634 0.4399 -0.9287 31 1 -0.3634 -1.0242 0.0835 32 1 -0.3633 0.5844 0.8453 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9373 2.4626 -0.0202 36 1 3.9969 0.8120 0.6435 37 1 2.5882 4.5476 -0.0822 38 1 1.0336 3.9029 -0.6803 39 1 -1.0242 5.9821 -0.4731 40 1 -0.9369 4.4288 0.4046 41 1 -2.4678 8.0558 4.5400 42 1 -0.5791 5.7018 3.5471 43 1 -0.1587 7.3171 2.9188 44 1 0.2630 3.8889 2.9903 45 1 2.0116 4.1273 3.2455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484413004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:15 Heat of formation + Delta-G solvation = -168.673612 kcal Electronic energy + Delta-G solvation = -30708.590990 eV Core-core repulsion = 26118.392190 eV Total energy + Delta-G solvation = -4590.198800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.47292 -47.97537 -47.89865 -40.54270 -38.64723 -35.55655 -35.06973 -32.31291 -31.50896 -30.33232 -29.71453 -27.13224 -25.56821 -25.38023 -23.33811 -23.12030 -21.77022 -20.25927 -19.47593 -19.26890 -18.89184 -18.54209 -17.90626 -17.16871 -16.68180 -15.86251 -15.36458 -15.07148 -14.85858 -14.78924 -14.75371 -14.35406 -14.22804 -14.08399 -13.98601 -13.78037 -13.72845 -13.48421 -13.21580 -12.89370 -12.69556 -12.28598 -12.24348 -12.05400 -11.86407 -11.75282 -11.56026 -11.31813 -11.15236 -10.93246 -10.86431 -10.83840 -10.37732 -10.14038 -10.07577 -9.96380 -9.73184 -9.68821 -8.66789 -8.47213 -6.86785 -5.74798 -3.10939 2.30182 2.62478 3.02561 3.38192 3.43649 3.45289 3.48369 3.69635 3.71102 4.30134 4.44417 4.45451 4.50889 4.70421 4.82876 4.97782 5.01156 5.12130 5.19175 5.32063 5.38978 5.45736 5.49119 5.56797 5.64301 5.66921 5.72314 5.87992 5.92075 6.05064 6.09517 6.18999 6.25240 6.27970 6.44452 6.56349 6.63545 6.77963 7.40901 7.56694 7.62044 7.76261 8.18423 8.23164 9.17700 9.78576 10.42064 11.34798 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.002940 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.299291 B = 9521.192468 C = 9795.731318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.109 4.109 4 H 0.105 0.895 5 C -0.157 4.157 6 C 0.457 3.543 7 F -0.180 7.180 8 F -0.183 7.183 9 F -0.177 7.177 10 C 0.535 3.465 11 O -0.533 6.533 12 N -0.606 5.606 13 C 0.107 3.893 14 C -0.109 4.109 15 H 0.100 0.900 16 C 0.144 3.856 17 N -0.601 5.601 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.182 3.818 27 C -0.121 4.121 28 H 0.089 0.911 29 C 0.118 3.882 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.473 -11.587 -10.585 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.130 4.130 4 H 0.123 0.877 5 C -0.196 4.196 6 C 0.403 3.597 7 F -0.161 7.161 8 F -0.165 7.165 9 F -0.158 7.158 10 C 0.323 3.677 11 O -0.410 6.410 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.129 4.129 15 H 0.118 0.882 16 C 0.018 3.982 17 N -0.327 5.327 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.057 3.943 27 C -0.141 4.141 28 H 0.108 0.892 29 C -0.004 4.004 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.250 -11.912 -9.917 21.055 hybrid contribution -0.872 0.271 -0.071 0.916 sum 13.378 -11.641 -9.987 20.353 Atomic orbital electron populations 1.21763 0.94874 1.02239 1.02137 1.21878 0.97320 0.93130 1.04316 1.21415 0.93656 0.99758 0.98191 0.87731 1.22798 0.97936 1.05916 0.92909 1.20450 0.74590 0.75910 0.88788 1.93198 1.80289 1.77650 1.65007 1.93199 1.31415 1.95590 1.96258 1.93106 1.91094 1.34729 1.96865 1.19747 0.77691 0.80540 0.89739 1.90710 1.51163 1.62935 1.36213 1.48321 1.69521 1.05755 1.10326 1.22051 1.00005 0.90823 0.88787 1.22967 0.97575 0.95874 0.96449 0.88161 1.21255 0.89266 0.95968 0.91733 1.44208 1.07304 1.70876 1.10302 1.19043 0.83711 1.29670 1.03418 0.90446 1.24804 0.98028 1.00007 0.97447 1.69935 1.31822 1.43418 1.11563 0.86097 0.84474 0.77457 0.77720 1.21627 1.21709 1.20599 1.21097 0.82685 1.00093 0.90415 1.23135 1.01599 0.94236 0.95159 0.89244 1.22016 1.01308 0.90521 0.86573 0.92821 0.92283 0.92092 0.89466 0.90234 0.86760 0.86338 0.91778 0.90771 0.94614 0.96537 0.93699 0.94601 0.91800 0.90601 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.77 37.16 0.36 -1.39 16 2 C -0.13 -1.35 4.78 -26.73 -0.13 -1.48 16 3 C -0.11 -1.13 1.67 -91.77 -0.15 -1.28 16 4 H 0.10 1.00 5.99 -51.93 -0.31 0.69 16 5 C -0.16 -1.27 4.81 -26.73 -0.13 -1.39 16 6 C 0.46 3.85 3.13 37.16 0.12 3.96 16 7 F -0.18 -1.64 16.44 2.25 0.04 -1.60 16 8 F -0.18 -1.63 17.32 2.25 0.04 -1.59 16 9 F -0.18 -1.59 14.20 2.25 0.03 -1.56 16 10 C 0.54 7.59 6.04 -10.99 -0.07 7.53 16 11 O -0.53 -9.46 15.79 5.56 0.09 -9.37 16 12 N -0.61 -8.68 3.30 -172.27 -0.57 -9.25 16 13 C 0.11 1.28 5.65 -3.33 -0.02 1.26 16 14 C -0.11 -1.64 4.16 -88.26 -0.37 -2.01 16 15 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 16 C 0.14 2.79 6.49 -3.39 -0.02 2.77 16 17 N -0.60 -14.73 3.38 -171.84 -0.58 -15.31 16 18 C -0.23 -6.29 10.24 -15.06 -0.15 -6.44 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.18 5.46 -17.43 -0.10 -0.27 16 21 N -0.92 -26.38 10.36 55.49 0.57 -25.80 16 22 Si 0.91 21.88 29.56 -169.99 -5.02 16.85 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.18 4.16 4.82 -3.57 -0.02 4.14 16 27 C -0.12 -2.04 4.01 -88.60 -0.36 -2.40 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 C 0.12 1.95 6.22 -3.60 -0.02 1.92 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.86 6.87 -51.93 -0.36 0.51 16 33 H 0.09 0.80 5.19 -51.93 -0.27 0.53 16 34 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.81 6.88 -51.93 -0.36 0.45 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.34 7.72 -51.93 -0.40 -0.06 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.04 0.92 7.17 -51.93 -0.37 0.55 16 43 H 0.06 1.64 6.92 -51.93 -0.36 1.28 16 44 H 0.08 1.51 7.29 -51.93 -0.38 1.13 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -31.16 360.04 -7.58 -38.75 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.55 Total: -1.46 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.05 Total: 4.93 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.57 Total: -50.36 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.11 Total: -4.75 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.16 -7.58 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484413004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.928 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds