Wall clock time and date at job start Tue Mar 31 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47127 * 2 1 4 4 H 1.09000 * 109.47229 * 305.24498 * 3 2 1 5 5 C 1.53003 * 109.46902 * 185.23990 * 3 2 1 6 6 C 1.52999 * 109.47041 * 66.27537 * 5 3 2 7 7 F 1.39902 * 109.47386 * 53.65720 * 6 5 3 8 8 F 1.39892 * 109.47129 * 173.66027 * 6 5 3 9 9 F 1.39905 * 109.46867 * 293.66195 * 6 5 3 10 10 C 1.50705 * 109.46963 * 65.24447 * 3 2 1 11 11 O 1.21281 * 119.99820 * 27.04400 * 10 3 2 12 12 N 1.34769 * 119.99869 * 207.31600 * 10 3 2 13 13 C 1.46751 * 125.33219 * 4.51070 * 12 10 3 14 14 C 1.54094 * 106.63849 * 161.58275 * 13 12 10 15 15 H 1.08990 * 113.49784 * 151.36685 * 14 13 12 16 16 C 1.53969 * 109.44651 * 278.64188 * 14 13 12 17 17 N 1.46776 * 106.62738 * 138.17554 * 16 14 13 18 18 C 1.36936 * 125.33912 * 161.52103 * 17 16 14 19 19 H 1.07996 * 119.99974 * 5.34948 * 18 17 16 20 20 C 1.38810 * 120.00135 * 185.35555 * 18 17 16 21 21 N 1.31616 * 119.99876 * 5.90397 * 20 18 17 22 22 Si 1.86800 * 119.99937 * 185.89765 * 20 18 17 23 23 H 1.48501 * 109.47178 * 94.99947 * 22 20 18 24 24 H 1.48502 * 109.47103 * 214.99575 * 22 20 18 25 25 H 1.48494 * 109.47102 * 334.99468 * 22 20 18 26 26 C 1.46675 * 109.32282 * 341.48093 * 17 16 14 27 27 C 1.53722 * 107.94238 * 0.54467 * 26 17 16 28 28 H 1.09000 * 113.05553 * 139.99711 * 27 26 17 29 29 C 1.46643 * 125.32884 * 184.81371 * 12 10 3 30 30 H 1.09001 * 109.47547 * 64.65576 * 1 2 3 31 31 H 1.08996 * 109.47308 * 184.65975 * 1 2 3 32 32 H 1.09002 * 109.47102 * 304.65983 * 1 2 3 33 33 H 1.09001 * 109.47255 * 240.00267 * 2 1 3 34 34 H 1.09004 * 109.47152 * 120.00193 * 2 1 3 35 35 H 1.09005 * 109.46831 * 186.26838 * 5 3 2 36 36 H 1.08997 * 109.47424 * 306.27184 * 5 3 2 37 37 H 1.08995 * 110.00505 * 281.01126 * 13 12 10 38 38 H 1.09004 * 110.00516 * 42.37625 * 13 12 10 39 39 H 1.08992 * 110.02960 * 257.46888 * 16 14 13 40 40 H 1.09002 * 110.02820 * 18.88407 * 16 14 13 41 41 H 0.97000 * 120.00000 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.76989 * 240.92184 * 26 17 16 43 43 H 1.08999 * 109.76594 * 120.16768 * 26 17 16 44 44 H 1.08995 * 109.76080 * 300.44140 * 29 12 10 45 45 H 1.08997 * 109.76140 * 61.16035 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6020 1.9828 -0.8393 5 6 3.5643 1.4445 -0.1317 6 6 3.9579 0.9052 -1.5084 7 9 3.2875 1.6276 -2.5014 8 9 5.3390 1.0410 -1.6850 9 9 3.6070 -0.4462 -1.5976 10 6 1.6465 2.1144 1.2903 11 8 1.4799 1.4522 2.2926 12 7 1.4743 3.4505 1.3290 13 6 1.5469 4.3495 0.1714 14 6 0.8430 5.6570 0.5833 15 1 1.2260 6.5376 0.0679 16 6 -0.6802 5.4877 0.4353 17 7 -1.2891 6.1186 1.6124 18 6 -2.5976 6.5094 1.7136 19 1 -3.2920 6.2827 0.9182 20 6 -3.0316 7.1971 2.8386 21 7 -2.1645 7.5756 3.7537 22 14 -4.8460 7.5857 3.0537 23 1 -5.4821 6.5339 3.8871 24 1 -4.9942 8.9035 3.7219 25 1 -5.5041 7.6284 1.7232 26 6 -0.2766 6.2639 2.6635 27 6 1.0506 5.7081 2.1227 28 1 1.9139 6.3077 2.4116 29 6 1.1914 4.2344 2.5356 30 1 -0.3634 0.4399 -0.9287 31 1 -0.3634 -1.0242 0.0835 32 1 -0.3633 0.5844 0.8453 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9373 2.4626 -0.0202 36 1 3.9969 0.8120 0.6435 37 1 2.5882 4.5476 -0.0822 38 1 1.0336 3.9029 -0.6803 39 1 -1.0242 5.9821 -0.4731 40 1 -0.9369 4.4288 0.4046 41 1 -2.4678 8.0558 4.5400 42 1 -0.5791 5.7018 3.5471 43 1 -0.1587 7.3171 2.9188 44 1 0.2630 3.8889 2.9903 45 1 2.0116 4.1273 3.2455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484413004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:14 Heat of formation + Delta-G solvation = -187.110228 kcal Electronic energy + Delta-G solvation = -30709.390462 eV Core-core repulsion = 26118.392190 eV Total energy + Delta-G solvation = -4590.998272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.11711 -48.62601 -48.54132 -41.73603 -39.95510 -36.69608 -36.44508 -34.07747 -32.36018 -31.78241 -31.26890 -28.23943 -27.18519 -26.75424 -24.70467 -23.83545 -22.82824 -21.93536 -20.85298 -20.18338 -19.59918 -19.43053 -18.79289 -18.57739 -18.00678 -17.10485 -16.73259 -16.43232 -16.02729 -15.66900 -15.53620 -15.51700 -15.18868 -14.94571 -14.80293 -14.73339 -14.70871 -14.61722 -14.57357 -14.04896 -13.89406 -13.60729 -13.51163 -13.28805 -13.12930 -12.99520 -12.84306 -12.74061 -12.71688 -12.24116 -12.02762 -11.97767 -11.87648 -11.78881 -11.59699 -11.57342 -11.43112 -10.88696 -10.71983 -9.66046 -8.88348 -7.85175 -5.22885 1.41523 1.44006 1.45888 1.54444 1.72510 2.02770 2.47959 2.82050 2.99973 3.08454 3.30172 3.35962 3.47997 3.55996 3.72066 3.78445 3.87487 3.95468 4.09902 4.24727 4.29367 4.33121 4.42174 4.44970 4.53945 4.58677 4.72607 4.79321 4.80140 4.85225 4.92417 5.02393 5.05663 5.14816 5.20760 5.24765 5.33387 5.38435 5.46002 5.58644 5.79103 6.21668 6.49993 7.07324 7.10419 7.79171 8.40302 9.22408 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021413 B = 0.002940 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.299291 B = 9521.192468 C = 9795.731318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.100 4.100 4 H 0.121 0.879 5 C -0.152 4.152 6 C 0.463 3.537 7 F -0.182 7.182 8 F -0.184 7.184 9 F -0.181 7.181 10 C 0.534 3.466 11 O -0.577 6.577 12 N -0.608 5.608 13 C 0.109 3.891 14 C -0.095 4.095 15 H 0.129 0.871 16 C 0.137 3.863 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.974 3.026 23 H -0.293 1.293 24 H -0.292 1.292 25 H -0.266 1.266 26 C 0.191 3.809 27 C -0.108 4.108 28 H 0.120 0.880 29 C 0.126 3.874 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.043 0.957 40 H 0.009 0.991 41 H 0.247 0.753 42 H -0.009 1.009 43 H 0.030 0.970 44 H 0.028 0.972 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.328 -11.894 -13.282 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.121 4.121 4 H 0.139 0.861 5 C -0.190 4.190 6 C 0.409 3.591 7 F -0.163 7.163 8 F -0.166 7.166 9 F -0.163 7.163 10 C 0.323 3.677 11 O -0.457 6.457 12 N -0.340 5.340 13 C -0.013 4.013 14 C -0.114 4.114 15 H 0.147 0.853 16 C 0.012 3.988 17 N -0.350 5.350 18 C -0.373 4.373 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.803 3.197 23 H -0.220 1.220 24 H -0.218 1.218 25 H -0.190 1.190 26 C 0.066 3.934 27 C -0.128 4.128 28 H 0.138 0.862 29 C 0.003 3.997 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.111 0.889 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.009 0.991 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 16.120 -12.227 -12.673 23.874 hybrid contribution -1.509 0.316 0.766 1.721 sum 14.612 -11.911 -11.907 22.297 Atomic orbital electron populations 1.21761 0.95864 1.02234 1.01136 1.21891 0.96404 0.93510 1.04608 1.21380 0.95562 0.99097 0.96078 0.86143 1.22795 0.95884 1.07456 0.92904 1.20389 0.74446 0.75632 0.88677 1.93199 1.80305 1.77641 1.65161 1.93201 1.31557 1.95577 1.96251 1.93096 1.91102 1.35181 1.96878 1.20429 0.76585 0.80132 0.90527 1.90695 1.52968 1.63814 1.38189 1.48403 1.69270 1.06163 1.10203 1.22268 1.02574 0.88433 0.88004 1.22988 0.94510 0.98935 0.94991 0.85334 1.21477 0.92417 0.94847 0.90064 1.44530 1.07064 1.70841 1.12527 1.19417 0.85482 1.29012 1.03394 0.90262 1.25609 1.01943 1.00639 0.97478 1.70156 1.33333 1.44267 1.11798 0.85119 0.79950 0.76683 0.77969 1.22040 1.21841 1.19044 1.20811 0.85570 0.97699 0.89358 1.22971 0.98982 0.94258 0.96552 0.86155 1.21695 0.99505 0.90589 0.87943 0.91626 0.91510 0.95541 0.87589 0.91411 0.84680 0.85742 0.87084 0.88911 0.93883 0.97313 0.94407 0.99106 0.95150 0.95368 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.77 71.98 0.70 -2.66 16 2 C -0.13 -2.42 4.78 30.59 0.15 -2.28 16 3 C -0.10 -1.79 1.67 -11.54 -0.02 -1.81 16 4 H 0.12 1.80 5.99 -2.39 -0.01 1.79 16 5 C -0.15 -1.88 4.81 30.59 0.15 -1.74 16 6 C 0.46 6.12 3.13 71.98 0.23 6.34 16 7 F -0.18 -2.57 16.44 44.97 0.74 -1.83 16 8 F -0.18 -2.66 17.32 44.97 0.78 -1.88 16 9 F -0.18 -2.71 14.20 44.97 0.64 -2.07 16 10 C 0.53 14.36 6.04 87.66 0.53 14.89 16 11 O -0.58 -20.65 15.79 -3.03 -0.05 -20.70 16 12 N -0.61 -16.16 3.30 -817.35 -2.70 -18.86 16 13 C 0.11 2.14 5.65 86.70 0.49 2.63 16 14 C -0.09 -2.57 4.16 -9.26 -0.04 -2.61 16 15 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 16 C 0.14 5.18 6.49 86.65 0.56 5.74 16 17 N -0.62 -31.31 3.38 -697.58 -2.36 -33.67 16 18 C -0.24 -13.65 10.24 84.03 0.86 -12.79 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.06 -3.61 5.46 84.86 0.46 -3.15 16 21 N -0.95 -56.70 10.36 21.65 0.22 -56.47 16 22 Si 0.97 46.03 29.56 68.60 2.03 48.06 16 23 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.19 9.09 4.82 86.59 0.42 9.51 16 27 C -0.11 -3.52 4.01 -9.49 -0.04 -3.56 16 28 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 29 C 0.13 4.14 6.22 86.58 0.54 4.68 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.03 0.75 6.87 -2.39 -0.02 0.74 16 33 H 0.11 1.66 5.19 -2.39 -0.01 1.65 16 34 H 0.07 1.47 7.67 -2.38 -0.02 1.46 16 35 H 0.14 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.56 6.88 -2.38 -0.02 1.54 16 39 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.01 0.36 7.72 -2.39 -0.02 0.34 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H -0.01 -0.51 7.17 -2.39 -0.02 -0.53 16 43 H 0.03 1.63 6.92 -2.39 -0.02 1.62 16 44 H 0.03 1.19 7.29 -2.39 -0.02 1.17 16 45 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -73.02 360.04 5.30 -67.72 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.00 Total: 6.51 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 4.99 Total: 13.20 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -4.83 Total: -109.00 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.05 Total: -20.70 kcal Atomic # 9 Polarization: -7.94 SS G_CDS: 2.16 Total: -5.79 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -73.02 5.30 -67.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484413004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.391 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds