Wall clock time and date at job start Tue Mar 31 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08997 * 109.47150 * 181.26201 * 3 2 1 5 5 C 1.53003 * 109.46707 * 301.25672 * 3 2 1 6 6 C 1.52994 * 109.47253 * 292.89049 * 5 3 2 7 7 F 1.39903 * 109.47016 * 66.62583 * 6 5 3 8 8 F 1.39898 * 109.47141 * 186.62020 * 6 5 3 9 9 F 1.39902 * 109.47454 * 306.62509 * 6 5 3 10 10 C 1.50699 * 109.47200 * 61.25523 * 3 2 1 11 11 O 1.21275 * 120.00223 * 245.55292 * 10 3 2 12 12 N 1.34775 * 119.99865 * 65.55400 * 10 3 2 13 13 C 1.47161 * 120.71371 * 182.29606 * 12 10 3 14 14 C 1.53885 * 108.03493 * 132.73193 * 13 12 10 15 15 H 1.08999 * 112.09704 * 181.90388 * 14 13 12 16 16 C 1.54538 * 108.37130 * 306.25678 * 14 13 12 17 17 C 1.54838 * 104.74456 * 89.16796 * 16 14 13 18 18 C 1.54548 * 104.74108 * 0.02562 * 17 16 14 19 19 H 1.09001 * 112.68075 * 146.80991 * 18 17 16 20 20 C 1.47172 * 120.70876 * 2.27552 * 12 10 3 21 21 N 1.48307 * 104.35948 * 24.82371 * 18 17 16 22 22 C 1.36932 * 128.07809 * 139.08313 * 21 18 17 23 23 H 1.08004 * 120.00155 * 338.19943 * 22 21 18 24 24 C 1.38815 * 120.00094 * 158.19087 * 22 21 18 25 25 N 1.31618 * 119.99961 * 353.77675 * 24 22 21 26 26 Si 1.86802 * 119.99671 * 173.77035 * 24 22 21 27 27 H 1.48503 * 109.46489 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.47147 * 299.99988 * 26 24 22 29 29 H 1.48502 * 109.47040 * 60.00665 * 26 24 22 30 30 H 1.09000 * 109.47015 * 185.73915 * 1 2 3 31 31 H 1.09000 * 109.46655 * 305.73398 * 1 2 3 32 32 H 1.08996 * 109.46911 * 65.73687 * 1 2 3 33 33 H 1.09000 * 109.46860 * 239.99892 * 2 1 3 34 34 H 1.08995 * 109.46876 * 120.00211 * 2 1 3 35 35 H 1.09001 * 109.47439 * 52.89860 * 5 3 2 36 36 H 1.09002 * 109.46380 * 172.89471 * 5 3 2 37 37 H 1.09005 * 109.74481 * 13.10543 * 13 12 10 38 38 H 1.08997 * 109.79060 * 252.39845 * 13 12 10 39 39 H 1.08995 * 110.36669 * 208.13448 * 16 14 13 40 40 H 1.08995 * 110.36413 * 330.45369 * 16 14 13 41 41 H 1.09001 * 110.30650 * 241.24882 * 17 16 14 42 42 H 1.09003 * 110.61004 * 118.91329 * 17 16 14 43 43 H 1.08998 * 109.74747 * 346.90040 * 20 12 10 44 44 H 1.09003 * 109.74639 * 107.58335 * 20 12 10 45 45 H 0.96995 * 119.99929 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4426 -0.0226 5 6 1.5043 2.1727 -1.2332 6 6 2.1289 1.5711 -2.4936 7 9 1.6772 0.2571 -2.6562 8 9 1.7582 2.3328 -3.6069 9 9 3.5225 1.5733 -2.3702 10 6 1.5633 2.1439 1.2457 11 8 0.7834 3.0687 1.1602 12 7 2.0037 1.7434 2.4549 13 6 1.5102 2.3839 3.6845 14 6 1.1270 1.2739 4.6791 15 1 0.7196 1.6769 5.6063 16 6 0.1419 0.3111 3.9786 17 6 1.0429 -0.7505 3.3013 18 6 2.4858 -0.3272 3.6582 19 1 3.1559 -1.1784 3.7785 20 6 2.9881 0.6559 2.5739 21 7 2.3409 0.4533 4.9109 22 6 3.1437 0.4272 6.0199 23 1 3.7718 -0.4301 6.2118 24 6 3.1504 1.5028 6.8974 25 7 2.4808 2.5969 6.6025 26 14 4.1096 1.3972 8.4969 27 1 3.9559 2.6673 9.2508 28 1 3.5885 0.2714 9.3131 29 1 5.5462 1.1689 8.1984 30 1 -0.3633 -1.0225 0.1028 31 1 -0.3632 0.6002 0.8342 32 1 -0.3633 0.4223 -0.9369 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.4206 2.0644 -1.2774 36 1 1.7615 3.2301 -1.1694 37 1 0.6350 2.9926 3.4569 38 1 2.2924 3.0097 4.1142 39 1 -0.5160 -0.1572 4.7107 40 1 -0.4422 0.8451 3.2293 41 1 0.8990 -0.7350 2.2209 42 1 0.8302 -1.7435 3.6974 43 1 3.0789 0.1353 1.6206 44 1 3.9559 1.0652 2.8637 45 1 2.4852 3.3483 7.2158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493928479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:02 Heat of formation + Delta-G solvation = -154.450787 kcal Electronic energy + Delta-G solvation = -31928.097556 eV Core-core repulsion = 27338.515504 eV Total energy + Delta-G solvation = -4589.582052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.27013 -47.76290 -47.70952 -40.48327 -38.12503 -35.70376 -33.78610 -32.42615 -30.95459 -30.54867 -29.22703 -27.32916 -25.93236 -24.00737 -23.72666 -23.48429 -21.59306 -19.74738 -19.57764 -18.84683 -18.70625 -18.32233 -17.37551 -16.70111 -16.07637 -15.73499 -15.51998 -15.09287 -14.70487 -14.60329 -14.54195 -14.22842 -14.02272 -13.87325 -13.83675 -13.51939 -13.24009 -13.15593 -12.90969 -12.83930 -12.68264 -12.35716 -11.90767 -11.80675 -11.72236 -11.50673 -11.21180 -11.13784 -11.00925 -10.90233 -10.88064 -10.49977 -10.38070 -10.05618 -9.88504 -9.77689 -9.61715 -9.20457 -8.76090 -8.10572 -6.81803 -5.90803 -3.29117 2.62059 2.99713 3.32565 3.37669 3.38825 3.41656 3.77313 3.94183 3.96218 4.37375 4.54647 4.71413 4.77787 5.01464 5.15525 5.24159 5.27888 5.34775 5.43664 5.54674 5.62015 5.67257 5.70255 5.72753 5.79479 5.88523 5.96365 6.01912 6.20718 6.27502 6.31303 6.41803 6.49849 6.60518 6.67673 6.77515 6.82513 6.95179 7.27899 7.45600 7.65032 8.03279 8.10273 8.60661 9.00220 9.62017 10.41352 11.22902 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.003477 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.179911 B = 8051.318922 C = 8220.262265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C -0.112 4.112 4 H 0.104 0.896 5 C -0.149 4.149 6 C 0.452 3.548 7 F -0.179 7.179 8 F -0.186 7.186 9 F -0.184 7.184 10 C 0.518 3.482 11 O -0.559 6.559 12 N -0.584 5.584 13 C 0.112 3.888 14 C 0.171 3.829 15 H 0.108 0.892 16 C -0.135 4.135 17 C -0.133 4.133 18 C 0.133 3.867 19 H 0.078 0.922 20 C 0.081 3.919 21 N -0.582 5.582 22 C -0.233 4.233 23 H 0.073 0.927 24 C 0.003 3.997 25 N -0.910 5.910 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 -4.818 -15.370 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C -0.133 4.133 4 H 0.122 0.878 5 C -0.187 4.187 6 C 0.399 3.601 7 F -0.161 7.161 8 F -0.167 7.167 9 F -0.165 7.165 10 C 0.305 3.695 11 O -0.439 6.439 12 N -0.314 5.314 13 C -0.011 4.011 14 C 0.064 3.936 15 H 0.126 0.874 16 C -0.174 4.174 17 C -0.172 4.172 18 C 0.025 3.975 19 H 0.096 0.904 20 C -0.044 4.044 21 N -0.303 5.303 22 C -0.361 4.361 23 H 0.091 0.909 24 C -0.195 4.195 25 N -0.555 5.555 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.279 -4.195 -15.151 15.885 hybrid contribution 0.783 -0.016 0.601 0.988 sum -1.496 -4.211 -14.550 15.221 Atomic orbital electron populations 1.21847 0.94941 1.02172 1.02122 1.22214 0.97532 0.93820 1.04863 1.21313 1.02544 0.96766 0.92689 0.87822 1.22743 1.04168 1.02747 0.89066 1.20664 0.76658 0.76371 0.86457 1.93125 1.88899 1.38079 1.95997 1.93182 1.91315 1.75766 1.56455 1.93178 1.30963 1.96349 1.96039 1.19965 0.81612 0.83599 0.84369 1.90655 1.36515 1.30167 1.86600 1.48142 1.41937 1.35405 1.05951 1.22489 0.99770 0.96437 0.82411 1.21723 0.86242 0.89516 0.96153 0.87441 1.22697 0.97990 0.97867 0.98815 1.22768 0.96517 0.98365 0.99515 1.22135 0.94665 0.93445 0.87287 0.90432 1.22962 0.92089 0.89396 0.99928 1.45123 1.26827 1.46727 1.11660 1.18904 1.18961 1.00046 0.98198 0.90887 1.24960 0.99774 0.94946 0.99806 1.69831 1.44823 1.04203 1.36606 0.86228 0.79697 0.76825 0.83100 1.21580 1.21098 1.21025 0.92170 0.91979 0.92697 0.89698 0.88900 0.86265 0.86639 0.91503 0.89603 0.92857 0.92927 0.91737 0.92683 0.90820 0.91496 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.15 37.16 0.30 -1.42 16 2 C -0.15 -1.62 4.47 -26.73 -0.12 -1.74 16 3 C -0.11 -1.38 1.57 -91.77 -0.14 -1.53 16 4 H 0.10 1.21 6.97 -51.93 -0.36 0.84 16 5 C -0.15 -1.66 3.98 -26.73 -0.11 -1.77 16 6 C 0.45 4.81 3.13 37.15 0.12 4.92 16 7 F -0.18 -1.89 14.35 2.25 0.03 -1.86 16 8 F -0.19 -2.06 17.32 2.25 0.04 -2.02 16 9 F -0.18 -2.07 16.41 2.25 0.04 -2.03 16 10 C 0.52 8.56 5.73 -10.99 -0.06 8.49 16 11 O -0.56 -10.84 15.42 5.56 0.09 -10.76 16 12 N -0.58 -10.42 2.28 -170.99 -0.39 -10.81 16 13 C 0.11 2.36 5.77 -3.22 -0.02 2.34 16 14 C 0.17 3.71 3.06 -65.65 -0.20 3.51 16 15 H 0.11 2.68 6.73 -51.93 -0.35 2.33 16 16 C -0.13 -2.45 6.23 -24.95 -0.16 -2.61 16 17 C -0.13 -2.14 6.20 -24.95 -0.15 -2.29 16 18 C 0.13 2.40 4.32 -65.21 -0.28 2.12 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.08 1.33 5.41 -2.76 -0.01 1.32 16 21 N -0.58 -13.19 2.78 -152.08 -0.42 -13.61 16 22 C -0.23 -5.90 10.35 -15.06 -0.16 -6.05 16 23 H 0.07 1.81 7.84 -52.48 -0.41 1.40 16 24 C 0.00 0.09 5.43 -17.43 -0.09 -0.01 16 25 N -0.91 -24.39 10.17 55.49 0.56 -23.82 16 26 Si 0.91 20.74 29.56 -169.99 -5.02 15.72 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.84 6.99 -51.93 -0.36 0.48 16 32 H 0.05 0.57 6.57 -51.93 -0.34 0.22 16 33 H 0.08 0.84 5.63 -51.93 -0.29 0.55 16 34 H 0.09 1.06 3.27 -51.93 -0.17 0.89 16 35 H 0.12 1.30 6.17 -51.93 -0.32 0.98 16 36 H 0.12 1.31 7.97 -51.93 -0.41 0.90 16 37 H 0.07 1.44 7.13 -51.93 -0.37 1.07 16 38 H 0.09 2.11 7.36 -51.93 -0.38 1.72 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.93 7.86 -51.93 -0.41 0.53 16 41 H 0.06 0.90 3.96 -51.93 -0.21 0.70 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.96 4.10 -51.93 -0.21 0.75 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 340.97 15.07 5.14 5.14 Total: -1.00 -27.63 340.97 -6.88 -34.51 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.85 Total: 4.24 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.09 Total: 5.30 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.25 Total: -48.24 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.11 Total: -5.91 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.63 -6.88 -34.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493928479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.941 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds