Wall clock time and date at job start Tue Mar 31 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08997 * 109.47150 * 181.26201 * 3 2 1 5 5 C 1.53003 * 109.46707 * 301.25672 * 3 2 1 6 6 C 1.52994 * 109.47253 * 292.89049 * 5 3 2 7 7 F 1.39903 * 109.47016 * 66.62583 * 6 5 3 8 8 F 1.39898 * 109.47141 * 186.62020 * 6 5 3 9 9 F 1.39902 * 109.47454 * 306.62509 * 6 5 3 10 10 C 1.50699 * 109.47200 * 61.25523 * 3 2 1 11 11 O 1.21275 * 120.00223 * 245.55292 * 10 3 2 12 12 N 1.34775 * 119.99865 * 65.55400 * 10 3 2 13 13 C 1.47161 * 120.71371 * 182.29606 * 12 10 3 14 14 C 1.53885 * 108.03493 * 132.73193 * 13 12 10 15 15 H 1.08999 * 112.09704 * 181.90388 * 14 13 12 16 16 C 1.54538 * 108.37130 * 306.25678 * 14 13 12 17 17 C 1.54838 * 104.74456 * 89.16796 * 16 14 13 18 18 C 1.54548 * 104.74108 * 0.02562 * 17 16 14 19 19 H 1.09001 * 112.68075 * 146.80991 * 18 17 16 20 20 C 1.47172 * 120.70876 * 2.27552 * 12 10 3 21 21 N 1.48307 * 104.35948 * 24.82371 * 18 17 16 22 22 C 1.36932 * 128.07809 * 139.08313 * 21 18 17 23 23 H 1.08004 * 120.00155 * 338.19943 * 22 21 18 24 24 C 1.38815 * 120.00094 * 158.19087 * 22 21 18 25 25 N 1.31618 * 119.99961 * 353.77675 * 24 22 21 26 26 Si 1.86802 * 119.99671 * 173.77035 * 24 22 21 27 27 H 1.48503 * 109.46489 * 180.02562 * 26 24 22 28 28 H 1.48497 * 109.47147 * 299.99988 * 26 24 22 29 29 H 1.48502 * 109.47040 * 60.00665 * 26 24 22 30 30 H 1.09000 * 109.47015 * 185.73915 * 1 2 3 31 31 H 1.09000 * 109.46655 * 305.73398 * 1 2 3 32 32 H 1.08996 * 109.46911 * 65.73687 * 1 2 3 33 33 H 1.09000 * 109.46860 * 239.99892 * 2 1 3 34 34 H 1.08995 * 109.46876 * 120.00211 * 2 1 3 35 35 H 1.09001 * 109.47439 * 52.89860 * 5 3 2 36 36 H 1.09002 * 109.46380 * 172.89471 * 5 3 2 37 37 H 1.09005 * 109.74481 * 13.10543 * 13 12 10 38 38 H 1.08997 * 109.79060 * 252.39845 * 13 12 10 39 39 H 1.08995 * 110.36669 * 208.13448 * 16 14 13 40 40 H 1.08995 * 110.36413 * 330.45369 * 16 14 13 41 41 H 1.09001 * 110.30650 * 241.24882 * 17 16 14 42 42 H 1.09003 * 110.61004 * 118.91329 * 17 16 14 43 43 H 1.08998 * 109.74747 * 346.90040 * 20 12 10 44 44 H 1.09003 * 109.74639 * 107.58335 * 20 12 10 45 45 H 0.96995 * 119.99929 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4426 -0.0226 5 6 1.5043 2.1727 -1.2332 6 6 2.1289 1.5711 -2.4936 7 9 1.6772 0.2571 -2.6562 8 9 1.7582 2.3328 -3.6069 9 9 3.5225 1.5733 -2.3702 10 6 1.5633 2.1439 1.2457 11 8 0.7834 3.0687 1.1602 12 7 2.0037 1.7434 2.4549 13 6 1.5102 2.3839 3.6845 14 6 1.1270 1.2739 4.6791 15 1 0.7196 1.6769 5.6063 16 6 0.1419 0.3111 3.9786 17 6 1.0429 -0.7505 3.3013 18 6 2.4858 -0.3272 3.6582 19 1 3.1559 -1.1784 3.7785 20 6 2.9881 0.6559 2.5739 21 7 2.3409 0.4533 4.9109 22 6 3.1437 0.4272 6.0199 23 1 3.7718 -0.4301 6.2118 24 6 3.1504 1.5028 6.8974 25 7 2.4808 2.5969 6.6025 26 14 4.1096 1.3972 8.4969 27 1 3.9559 2.6673 9.2508 28 1 3.5885 0.2714 9.3131 29 1 5.5462 1.1689 8.1984 30 1 -0.3633 -1.0225 0.1028 31 1 -0.3632 0.6002 0.8342 32 1 -0.3633 0.4223 -0.9369 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.4206 2.0644 -1.2774 36 1 1.7615 3.2301 -1.1694 37 1 0.6350 2.9926 3.4569 38 1 2.2924 3.0097 4.1142 39 1 -0.5160 -0.1572 4.7107 40 1 -0.4422 0.8451 3.2293 41 1 0.8990 -0.7350 2.2209 42 1 0.8302 -1.7435 3.6974 43 1 3.0789 0.1353 1.6206 44 1 3.9559 1.0652 2.8637 45 1 2.4852 3.3483 7.2158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493928479.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:01 Heat of formation + Delta-G solvation = -168.507237 kcal Electronic energy + Delta-G solvation = -31928.707090 eV Core-core repulsion = 27338.515504 eV Total energy + Delta-G solvation = -4590.191586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.11440 -48.60152 -48.55679 -41.87943 -39.58516 -36.82937 -35.38141 -34.16036 -32.25612 -31.77121 -30.88033 -28.53527 -27.35361 -25.56228 -25.30138 -24.41575 -22.77809 -21.24231 -20.98121 -20.21906 -19.55329 -19.41190 -18.41418 -18.18958 -17.40007 -17.04728 -16.72572 -16.45823 -16.37930 -15.68777 -15.50461 -15.41410 -15.12562 -14.91642 -14.74793 -14.71156 -14.64231 -14.46968 -14.29319 -14.10349 -13.91805 -13.53849 -13.23589 -13.19448 -13.10163 -12.79775 -12.75113 -12.66334 -12.48146 -12.22178 -12.01052 -11.92047 -11.76032 -11.72505 -11.50814 -11.27036 -11.10633 -10.69764 -10.51785 -9.69858 -8.61423 -7.86139 -5.24042 1.49784 1.50600 1.56769 1.66840 1.70902 2.15107 2.51698 2.84903 2.99276 3.11147 3.35209 3.45621 3.57257 3.77143 3.78837 4.06381 4.08973 4.15621 4.26447 4.29736 4.34169 4.44223 4.48223 4.54734 4.63411 4.73609 4.78379 4.88605 4.91347 5.00604 5.03270 5.11333 5.16759 5.18603 5.25511 5.31009 5.42099 5.50601 5.57722 5.61324 5.85138 6.25603 6.63378 7.07212 7.22206 7.73781 8.55320 9.26171 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023227 B = 0.003477 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.179911 B = 8051.318922 C = 8220.262265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C -0.105 4.105 4 H 0.119 0.881 5 C -0.146 4.146 6 C 0.463 3.537 7 F -0.175 7.175 8 F -0.188 7.188 9 F -0.185 7.185 10 C 0.518 3.482 11 O -0.589 6.589 12 N -0.588 5.588 13 C 0.128 3.872 14 C 0.169 3.831 15 H 0.065 0.935 16 C -0.125 4.125 17 C -0.120 4.120 18 C 0.127 3.873 19 H 0.093 0.907 20 C 0.087 3.913 21 N -0.603 5.603 22 C -0.236 4.236 23 H 0.079 0.921 24 C -0.050 4.050 25 N -0.935 5.935 26 Si 0.969 3.031 27 H -0.301 1.301 28 H -0.281 1.281 29 H -0.278 1.278 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.118 0.882 44 H 0.048 0.952 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 -7.226 -17.682 19.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.180 4.180 3 C -0.126 4.126 4 H 0.137 0.863 5 C -0.185 4.185 6 C 0.409 3.591 7 F -0.156 7.156 8 F -0.169 7.169 9 F -0.167 7.167 10 C 0.308 3.692 11 O -0.471 6.471 12 N -0.318 5.318 13 C 0.004 3.996 14 C 0.062 3.938 15 H 0.083 0.917 16 C -0.165 4.165 17 C -0.158 4.158 18 C 0.020 3.980 19 H 0.111 0.889 20 C -0.037 4.037 21 N -0.325 5.325 22 C -0.365 4.365 23 H 0.096 0.904 24 C -0.245 4.245 25 N -0.582 5.582 26 Si 0.798 3.202 27 H -0.227 1.227 28 H -0.207 1.207 29 H -0.204 1.204 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.845 -6.645 -17.503 18.813 hybrid contribution 0.621 0.747 1.267 1.597 sum -1.224 -5.898 -16.236 17.317 Atomic orbital electron populations 1.21856 0.94950 1.02804 1.01551 1.22233 0.97478 0.92469 1.05784 1.21329 1.03376 0.97370 0.90549 0.86340 1.22689 1.04471 1.02492 0.88820 1.20410 0.76401 0.76364 0.85971 1.93131 1.88836 1.37730 1.95944 1.93184 1.91334 1.75901 1.56477 1.93181 1.31135 1.96361 1.96025 1.20680 0.80593 0.83042 0.84919 1.90644 1.37805 1.31596 1.87057 1.48110 1.42467 1.35859 1.05373 1.21942 0.97804 0.95890 0.83976 1.21549 0.87074 0.90329 0.94873 0.91680 1.22568 0.97485 0.97686 0.98717 1.22716 0.94224 0.97953 1.00945 1.22424 0.96378 0.93603 0.85613 0.88860 1.22971 0.90574 0.88592 1.01581 1.45304 1.26984 1.47279 1.12948 1.19228 1.18406 0.99812 0.99057 0.90382 1.25630 1.01239 0.95025 1.02607 1.70029 1.46484 1.04584 1.37072 0.85314 0.78767 0.76092 0.80008 1.22740 1.20708 1.20412 0.90494 0.94548 0.91816 0.87535 0.88952 0.85872 0.87040 0.92711 0.93810 0.92858 0.92560 0.89094 0.91269 0.86406 0.93365 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.15 71.98 0.59 -2.32 16 2 C -0.14 -2.54 4.47 30.60 0.14 -2.40 16 3 C -0.11 -2.29 1.57 -11.54 -0.02 -2.31 16 4 H 0.12 2.31 6.97 -2.39 -0.02 2.29 16 5 C -0.15 -2.89 3.98 30.59 0.12 -2.77 16 6 C 0.46 8.37 3.13 71.98 0.23 8.60 16 7 F -0.17 -2.99 14.35 44.97 0.65 -2.34 16 8 F -0.19 -3.68 17.32 44.97 0.78 -2.90 16 9 F -0.19 -3.58 16.41 44.97 0.74 -2.84 16 10 C 0.52 16.51 5.73 87.66 0.50 17.02 16 11 O -0.59 -22.74 15.42 -3.01 -0.05 -22.79 16 12 N -0.59 -20.67 2.28 -813.29 -1.86 -22.53 16 13 C 0.13 5.67 5.77 86.55 0.50 6.17 16 14 C 0.17 7.59 3.06 45.46 0.14 7.73 16 15 H 0.07 3.45 6.73 -2.39 -0.02 3.44 16 16 C -0.13 -4.49 6.23 31.75 0.20 -4.29 16 17 C -0.12 -3.52 6.20 31.75 0.20 -3.32 16 18 C 0.13 4.31 4.32 45.76 0.20 4.51 16 19 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 20 C 0.09 2.68 5.41 86.84 0.47 3.15 16 21 N -0.60 -27.46 2.78 -635.06 -1.76 -29.23 16 22 C -0.24 -12.06 10.35 84.04 0.87 -11.19 16 23 H 0.08 3.82 7.84 -2.91 -0.02 3.80 16 24 C -0.05 -2.66 5.43 84.86 0.46 -2.20 16 25 N -0.94 -52.70 10.17 21.65 0.22 -52.48 16 26 Si 0.97 43.61 29.56 68.60 2.03 45.63 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.88 6.99 -2.39 -0.02 0.87 16 32 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16 33 H 0.11 1.55 5.63 -2.39 -0.01 1.53 16 34 H 0.09 1.65 3.27 -2.39 -0.01 1.64 16 35 H 0.12 2.37 6.17 -2.39 -0.01 2.36 16 36 H 0.11 2.34 7.97 -2.39 -0.02 2.32 16 37 H 0.05 2.49 7.13 -2.38 -0.02 2.47 16 38 H 0.04 2.29 7.36 -2.39 -0.02 2.27 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.96 7.86 -2.39 -0.02 1.94 16 41 H 0.09 2.19 3.96 -2.39 -0.01 2.18 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.12 2.60 4.10 -2.39 -0.01 2.59 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -62.43 340.97 6.36 -56.07 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.04 Total: 17.04 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 4.58 Total: 16.37 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -3.40 Total: -104.24 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 9 Polarization: -10.24 SS G_CDS: 2.16 Total: -8.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.43 6.36 -56.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493928479.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.437 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds